Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46889 * 2 1 4 4 C 1.50698 * 109.47026 * 240.00078 * 2 1 3 5 5 H 1.07994 * 119.99914 * 240.00149 * 4 2 1 6 6 C 1.37880 * 119.99757 * 59.99904 * 4 2 1 7 7 N 1.31506 * 120.00324 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99648 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46814 * 60.00505 * 8 6 4 10 10 H 1.48503 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47523 * 300.00354 * 8 6 4 12 12 C 1.52998 * 109.46938 * 120.00145 * 2 1 3 13 13 N 1.46906 * 109.46994 * 299.99647 * 12 2 1 14 14 C 1.46901 * 110.99663 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.46888 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.47115 * 305.00204 * 15 14 13 17 17 O 1.42901 * 109.46769 * 65.00310 * 15 14 13 18 18 C 1.50698 * 109.46975 * 185.00217 * 15 14 13 19 19 C 1.38244 * 119.97167 * 100.00102 * 18 15 14 20 20 C 1.38205 * 120.02298 * 180.02562 * 19 18 15 21 21 C 1.38459 * 119.97412 * 0.24026 * 20 19 18 22 22 F 1.35099 * 120.02759 * 179.72396 * 21 20 19 23 23 C 1.38466 * 119.94836 * 359.48301 * 21 20 19 24 24 C 1.38196 * 119.97140 * 0.53984 * 23 21 20 25 25 H 1.09004 * 109.46900 * 300.00341 * 1 2 3 26 26 H 1.09005 * 109.47355 * 59.99745 * 1 2 3 27 27 H 1.08991 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46425 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46951 * 299.99816 * 3 2 1 30 30 H 1.08993 * 109.46903 * 60.00215 * 3 2 1 31 31 H 0.97001 * 120.00354 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46878 * 180.02562 * 12 2 1 33 33 H 1.08991 * 109.47167 * 60.00111 * 12 2 1 34 34 H 1.00899 * 110.99836 * 303.95899 * 13 12 2 35 35 H 1.09002 * 109.46685 * 60.00683 * 14 13 12 36 36 H 1.08994 * 109.47482 * 300.00422 * 14 13 12 37 37 H 0.96700 * 114.00245 * 59.99881 * 17 15 14 38 38 H 1.07999 * 119.98898 * 0.02589 * 19 18 15 39 39 H 1.08002 * 120.00949 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.00962 * 180.25357 * 23 21 20 41 41 H 1.08000 * 119.98525 * 179.74601 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0287 2.4487 14 6 2.0208 -0.6953 3.6703 15 6 1.4923 0.0534 4.8956 16 1 1.7823 1.1022 4.8335 17 8 0.0673 -0.0453 4.9360 18 6 2.0737 -0.5554 6.1455 19 6 3.1479 0.0481 6.7725 20 6 3.6822 -0.5096 7.9186 21 6 3.1444 -1.6759 8.4360 22 9 3.6695 -2.2250 9.5531 23 6 2.0649 -2.2762 7.8104 24 6 1.5325 -1.7170 6.6642 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.7088 1.1615 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 1.8198 0.9436 2.4401 35 1 3.1107 -0.6954 3.6873 36 1 1.6570 -1.7226 3.6868 37 1 -0.2627 -0.9525 4.9916 38 1 3.5697 0.9556 6.3665 39 1 4.5217 -0.0382 8.4079 40 1 1.6420 -3.1837 8.2154 41 1 0.6931 -2.1873 6.1738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819362473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = -77.547624 kcal Electronic energy + Delta-G solvation = -21637.653031 eV Core-core repulsion = 18238.588710 eV Total energy + Delta-G solvation = -3399.064321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15583 -39.83900 -37.42676 -36.31635 -33.67145 -31.70790 -31.34766 -30.64406 -27.31790 -25.55394 -25.19506 -24.07427 -23.39148 -22.45729 -21.24409 -18.45800 -18.13478 -17.11278 -16.77464 -15.97960 -15.83981 -15.60124 -15.15325 -14.82641 -14.46416 -14.23759 -13.86207 -13.68040 -13.24957 -13.15399 -12.87286 -12.54220 -12.24151 -12.09125 -11.74204 -11.41762 -11.16190 -11.11427 -10.93708 -10.66481 -10.62213 -10.19170 -10.11677 -10.03457 -9.41994 -9.37585 -9.11052 -8.79840 -8.62344 -8.28496 -7.71605 -5.90758 -4.01525 0.81201 0.92174 3.24692 3.32497 3.37492 3.39883 3.95911 4.24820 4.38396 4.45689 4.47049 4.57300 4.91499 4.94192 5.09114 5.15871 5.28034 5.34488 5.55862 5.68212 5.74872 5.81056 5.86983 5.93171 6.26199 6.31233 6.37765 6.56872 6.71607 6.88869 7.08112 7.16950 7.40849 7.47398 7.62739 7.71240 7.76507 7.83470 7.95343 8.21803 8.35705 8.56135 8.99843 9.63464 11.09653 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035473 B = 0.002966 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.134837 B = 9438.776866 C = 9668.701511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.070 3.930 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.075 3.925 13 N -0.677 5.677 14 C 0.032 3.968 15 C 0.152 3.848 16 H 0.106 0.894 17 O -0.539 6.539 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.152 4.152 21 C 0.092 3.908 22 F -0.142 7.142 23 C -0.150 4.150 24 C -0.082 4.082 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.012 0.988 33 H 0.055 0.945 34 H 0.338 0.662 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.371 0.629 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -2.676 19.583 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.205 1.205 12 C -0.053 4.053 13 N -0.309 5.309 14 C -0.098 4.098 15 C 0.092 3.908 16 H 0.124 0.876 17 O -0.344 6.344 18 C -0.121 4.121 19 C -0.099 4.099 20 C -0.170 4.170 21 C 0.073 3.927 22 F -0.121 7.121 23 C -0.169 4.169 24 C -0.100 4.100 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.218 0.782 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.219 -2.255 19.425 19.681 hybrid contribution 1.557 -1.069 -0.577 1.975 sum 3.776 -3.325 18.849 19.509 Atomic orbital electron populations 1.21639 0.97306 0.98551 1.00210 1.18076 0.93266 0.91911 0.89808 1.21842 0.97627 0.99227 1.00375 1.21080 1.31235 1.11909 0.90560 0.93109 1.24880 0.95011 0.94962 0.98664 1.69820 1.36691 1.22744 1.23035 0.86726 0.79083 0.79853 0.82671 1.20398 1.21343 1.20493 1.22172 0.95376 0.97827 0.89907 1.60526 1.63529 1.06229 1.00625 1.22616 0.97339 0.98862 0.91001 1.20826 0.81225 0.99835 0.88929 0.87619 1.86665 1.18965 1.32248 1.96475 1.20784 0.96907 0.96027 0.98339 1.20912 0.95191 0.99731 0.94072 1.21148 1.02044 0.95740 0.98117 1.17747 0.95429 0.94289 0.85208 1.91497 1.85759 1.85145 1.49670 1.21121 0.96780 1.01704 0.97301 1.20794 0.99461 0.94762 0.94972 0.95865 0.90797 0.96394 0.96287 0.89791 0.96975 0.93111 0.96991 0.92641 0.84280 0.95103 0.91060 0.78190 0.84742 0.84661 0.84640 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 4 C -0.51 -13.67 8.01 -34.44 -0.28 -13.95 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.47 9.35 55.43 0.52 -23.95 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.08 1.54 4.59 -3.82 -0.02 1.53 16 13 N -0.68 -11.61 5.66 -113.78 -0.64 -12.25 16 14 C 0.03 0.43 5.30 -3.82 -0.02 0.41 16 15 C 0.15 1.74 3.38 -27.88 -0.09 1.64 16 16 H 0.11 1.20 8.00 -51.93 -0.42 0.79 16 17 O -0.54 -6.81 13.14 -35.23 -0.46 -7.28 16 18 C -0.12 -1.20 4.97 -104.62 -0.52 -1.72 16 19 C -0.08 -0.75 9.67 -39.59 -0.38 -1.13 16 20 C -0.15 -1.39 10.03 -39.51 -0.40 -1.78 16 21 C 0.09 0.92 7.30 -39.42 -0.29 0.64 16 22 F -0.14 -1.51 17.27 2.25 0.04 -1.48 16 23 C -0.15 -1.37 10.03 -39.51 -0.40 -1.76 16 24 C -0.08 -0.74 9.32 -39.59 -0.37 -1.11 16 25 H 0.02 0.52 7.60 -51.93 -0.39 0.13 16 26 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 30 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.34 5.78 6.77 -39.29 -0.27 5.51 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.37 3.54 7.50 45.56 0.34 3.88 16 38 H 0.13 1.01 8.04 -52.49 -0.42 0.58 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.94 6.78 -52.49 -0.36 0.59 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -29.10 335.03 -8.27 -37.38 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.41 Total: 5.89 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.35 Total: -19.39 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.13 Total: -36.20 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.46 Total: -7.28 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.10 -8.27 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819362473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.170 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds