Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00047 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99679 * 4 2 1 7 7 N 1.31520 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00556 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47364 * 120.00013 * 8 6 4 11 11 H 1.48497 * 109.46870 * 240.00080 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 13 13 N 1.46906 * 109.47053 * 300.00316 * 12 2 1 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.47157 * 59.99991 * 15 14 13 17 17 O 1.42901 * 109.47147 * 300.00445 * 15 14 13 18 18 C 1.50692 * 109.47453 * 180.02562 * 15 14 13 19 19 C 1.38249 * 119.97449 * 84.72277 * 18 15 14 20 20 C 1.38196 * 120.02342 * 179.72471 * 19 18 15 21 21 C 1.38457 * 119.97610 * 0.53238 * 20 19 18 22 22 F 1.35102 * 120.02635 * 179.71991 * 21 20 19 23 23 C 1.38464 * 119.94998 * 359.74404 * 21 20 19 24 24 C 1.38197 * 119.97166 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 26 26 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 27 27 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 30 30 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 31 31 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47056 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.47006 * 60.00102 * 12 2 1 34 34 H 1.00899 * 110.99484 * 303.95475 * 13 12 2 35 35 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 36 36 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 37 37 H 0.96706 * 113.99785 * 299.99503 * 17 15 14 38 38 H 1.08003 * 119.98619 * 359.97438 * 19 18 15 39 39 H 1.08003 * 120.01498 * 180.29750 * 20 19 18 40 40 H 1.08002 * 120.01408 * 179.97438 * 23 21 20 41 41 H 1.07996 * 119.98662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 3.1466 -2.2869 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8164 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.4924 0.0533 4.8956 16 1 0.4025 0.0538 4.8788 17 8 1.9698 1.4001 4.8735 18 6 1.9757 -0.6300 6.1488 19 6 3.2239 -0.3298 6.6617 20 6 3.6658 -0.9515 7.8140 21 6 2.8624 -1.8836 8.4488 22 9 3.2957 -2.4962 9.5723 23 6 1.6147 -2.1877 7.9310 24 6 1.1730 -1.5611 6.7812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1618 -3.4843 32 1 3.1300 -0.7216 1.2489 33 1 1.6768 -1.7490 1.2492 34 1 1.8198 0.9436 2.4401 35 1 1.6572 -1.7226 3.6869 36 1 3.1109 -0.6954 3.6873 37 1 2.9337 1.4759 4.8868 38 1 3.8523 0.3940 6.1638 39 1 4.6390 -0.7134 8.2173 40 1 0.9874 -2.9149 8.4251 41 1 0.2001 -1.7984 6.3769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819362474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = -79.100624 kcal Electronic energy + Delta-G solvation = -21652.703563 eV Core-core repulsion = 18253.571899 eV Total energy + Delta-G solvation = -3399.131664 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15300 -39.87182 -37.51394 -36.33192 -33.63666 -31.75518 -31.34143 -30.65346 -27.36018 -25.55167 -25.20639 -24.10019 -23.35605 -22.43019 -21.23058 -18.46459 -18.16291 -17.14779 -16.80077 -16.01691 -15.83952 -15.59836 -15.34348 -14.79803 -14.48752 -14.11629 -13.81050 -13.76692 -13.28823 -13.14370 -12.86211 -12.53656 -12.29831 -12.06887 -11.75517 -11.39328 -11.22423 -11.11205 -10.95842 -10.62070 -10.60497 -10.25962 -10.17665 -10.05046 -9.42089 -9.38244 -9.11680 -8.78986 -8.61120 -8.29317 -7.74258 -5.91250 -4.01821 0.81388 0.92422 3.24702 3.29986 3.38449 3.41735 3.95885 4.24920 4.32936 4.41494 4.45615 4.57476 4.91948 4.95676 5.11774 5.16521 5.29786 5.34202 5.55831 5.66646 5.79323 5.83175 5.85948 5.93313 6.26142 6.31319 6.39256 6.57169 6.72097 6.89259 7.08707 7.17410 7.38897 7.45901 7.49767 7.70498 7.76646 7.82930 7.98660 8.22005 8.35284 8.55950 8.99949 9.63306 11.09243 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035883 B = 0.002966 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.134737 B = 9438.961856 C = 9673.509228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.682 5.682 14 C 0.033 3.967 15 C 0.149 3.851 16 H 0.118 0.882 17 O -0.549 6.549 18 C -0.119 4.119 19 C -0.084 4.084 20 C -0.151 4.151 21 C 0.092 3.908 22 F -0.142 7.142 23 C -0.151 4.151 24 C -0.079 4.079 25 H 0.021 0.979 26 H 0.074 0.926 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.013 0.987 31 H 0.257 0.743 32 H 0.012 0.988 33 H 0.055 0.945 34 H 0.345 0.655 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.369 0.631 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -2.533 19.574 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.315 5.315 14 C -0.097 4.097 15 C 0.090 3.910 16 H 0.136 0.864 17 O -0.354 6.354 18 C -0.120 4.120 19 C -0.102 4.102 20 C -0.169 4.169 21 C 0.073 3.927 22 F -0.121 7.121 23 C -0.170 4.170 24 C -0.097 4.097 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.216 0.784 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.738 -2.638 19.448 19.702 hybrid contribution 2.056 -0.659 -0.594 2.239 sum 3.794 -3.297 18.853 19.512 Atomic orbital electron populations 1.21646 0.97383 0.98546 1.00168 1.18088 0.93225 0.91984 0.89855 1.21838 0.97628 0.99169 1.00436 1.21153 1.31057 1.11854 0.90523 0.92993 1.24889 0.95034 0.94978 0.98697 1.69849 1.36830 1.22797 1.22809 0.86606 0.78608 0.79713 0.83437 1.19973 1.21098 1.21172 1.22168 0.95419 0.97810 0.89893 1.60522 1.63509 1.06893 1.00595 1.22574 0.96934 0.99183 0.91038 1.20963 1.00071 0.80994 0.89006 0.86405 1.86686 1.26352 1.25656 1.96703 1.20760 0.94840 0.98079 0.98298 1.20763 0.95365 0.98950 0.95117 1.21102 1.00743 0.97920 0.97171 1.17747 0.94366 0.95597 0.84989 1.91497 1.89852 1.81555 1.49172 1.21160 0.95292 1.02471 0.98065 1.20919 0.99987 0.94898 0.93924 0.96016 0.90731 0.96348 0.96303 0.89811 0.96855 0.93235 0.96988 0.92644 0.83511 0.90489 0.95751 0.78361 0.85141 0.84698 0.84608 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 4 C -0.51 -13.61 8.01 -34.44 -0.28 -13.89 16 5 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.45 9.35 55.43 0.52 -23.93 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.08 1.55 4.59 -3.82 -0.02 1.53 16 13 N -0.68 -11.75 5.71 -113.78 -0.65 -12.40 16 14 C 0.03 0.44 5.37 -3.82 -0.02 0.42 16 15 C 0.15 1.70 3.48 -27.88 -0.10 1.61 16 16 H 0.12 1.41 8.05 -51.93 -0.42 1.00 16 17 O -0.55 -6.51 12.47 -35.23 -0.44 -6.95 16 18 C -0.12 -1.19 5.00 -104.62 -0.52 -1.71 16 19 C -0.08 -0.76 9.32 -39.59 -0.37 -1.13 16 20 C -0.15 -1.37 10.03 -39.52 -0.40 -1.77 16 21 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 22 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 23 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 24 C -0.08 -0.73 9.68 -39.59 -0.38 -1.12 16 25 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 26 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 30 H 0.01 0.27 6.57 -51.93 -0.34 -0.07 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.34 6.03 6.16 -39.29 -0.24 5.78 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.37 3.17 7.39 45.56 0.34 3.51 16 38 H 0.13 0.92 6.62 -52.48 -0.35 0.57 16 39 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -28.89 333.82 -8.26 -37.15 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.38 Total: 5.99 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.35 Total: -19.42 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.13 Total: -36.33 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.44 Total: -6.95 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.89 -8.26 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819362474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.954 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds