Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46717 * 2 1 4 4 C 1.50699 * 109.47037 * 239.99978 * 2 1 3 5 5 H 1.07994 * 120.00214 * 241.24209 * 4 2 1 6 6 C 1.37879 * 119.99684 * 61.24115 * 4 2 1 7 7 N 1.31513 * 119.99933 * 194.10862 * 6 4 2 8 8 Si 1.86798 * 120.00139 * 14.11236 * 6 4 2 9 9 H 1.48503 * 109.47419 * 84.53435 * 8 6 4 10 10 H 1.48498 * 109.46978 * 204.52864 * 8 6 4 11 11 H 1.48491 * 109.47322 * 324.52946 * 8 6 4 12 12 C 1.52999 * 109.46755 * 119.99940 * 2 1 3 13 13 N 1.46897 * 109.47605 * 299.99946 * 12 2 1 14 14 C 1.46898 * 111.00358 * 180.02562 * 13 12 2 15 15 C 1.52993 * 109.47406 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47099 * 59.99823 * 15 14 13 17 17 O 1.42905 * 109.47207 * 300.00409 * 15 14 13 18 18 C 1.50699 * 109.47584 * 180.02562 * 15 14 13 19 19 C 1.38214 * 120.01279 * 94.72089 * 18 15 14 20 20 C 1.38226 * 120.02552 * 179.72270 * 19 18 15 21 21 C 1.38276 * 120.04859 * 0.55975 * 20 19 18 22 22 C 1.38170 * 120.02337 * 359.72231 * 21 20 19 23 23 C 1.38439 * 120.01057 * 275.00700 * 18 15 14 24 24 F 1.35102 * 120.02488 * 0.02562 * 23 18 15 25 25 H 1.08997 * 109.47485 * 309.51455 * 1 2 3 26 26 H 1.09002 * 109.47258 * 69.51945 * 1 2 3 27 27 H 1.08997 * 109.47064 * 189.51802 * 1 2 3 28 28 H 1.09000 * 109.46746 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47677 * 299.99889 * 3 2 1 30 30 H 1.09000 * 109.47261 * 60.00680 * 3 2 1 31 31 H 0.96993 * 120.00808 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46846 * 180.02562 * 12 2 1 33 33 H 1.09001 * 109.47086 * 60.00611 * 12 2 1 34 34 H 1.00901 * 111.00060 * 56.04435 * 13 12 2 35 35 H 1.08993 * 109.47061 * 300.00389 * 14 13 12 36 36 H 1.09008 * 109.46945 * 60.00117 * 14 13 12 37 37 H 0.96706 * 113.99609 * 299.99514 * 17 15 14 38 38 H 1.07999 * 119.99238 * 0.02562 * 19 18 15 39 39 H 1.07993 * 119.97787 * 180.27709 * 20 19 18 40 40 H 1.07997 * 119.98592 * 179.74196 * 21 20 19 41 41 H 1.08007 * 120.01160 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6366 -1.6000 -1.1315 6 6 1.7204 -0.2245 -2.4826 7 7 1.9116 -0.9750 -3.5455 8 14 1.0265 1.4997 -2.6692 9 1 2.1411 2.4800 -2.7118 10 1 0.2442 1.5847 -3.9285 11 1 0.1426 1.8050 -1.5157 12 6 2.0399 -0.7212 1.2493 13 7 1.5503 -0.0288 2.4487 14 6 2.0217 -0.6946 3.6703 15 6 1.4932 0.0539 4.8955 16 1 0.4033 0.0538 4.8792 17 8 1.9697 1.4010 4.8730 18 6 1.9774 -0.6287 6.1488 19 6 3.1258 -0.1860 6.7776 20 6 3.5670 -0.8083 7.9303 21 6 2.8664 -1.8815 8.4493 22 6 1.7213 -2.3295 7.8192 23 6 1.2752 -1.7032 6.6674 24 9 0.1559 -2.1407 6.0501 25 1 -0.3634 0.6538 0.7928 26 1 -0.3634 0.3596 -0.9627 27 1 -0.3633 -1.0135 0.1699 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6926 -0.6332 -4.4264 32 1 3.1299 -0.7209 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 0.5438 0.0413 2.4402 35 1 1.6587 -1.7221 3.6873 36 1 3.1117 -0.6940 3.6869 37 1 2.9337 1.4775 4.8858 38 1 3.6762 0.6495 6.3708 39 1 4.4620 -0.4589 8.4234 40 1 3.2143 -2.3696 9.3477 41 1 1.1740 -3.1675 8.2249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819362990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = -56.831207 kcal Electronic energy + Delta-G solvation = -22126.797656 eV Core-core repulsion = 18728.631666 eV Total energy + Delta-G solvation = -3398.165990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.13156 -39.74692 -37.68914 -36.62699 -33.73847 -31.93457 -31.34303 -30.83846 -27.84751 -26.15655 -25.12364 -24.42077 -23.03713 -22.58652 -21.37620 -18.74165 -18.21931 -17.04358 -16.80292 -16.05720 -15.89528 -15.71977 -15.28732 -15.17746 -14.67691 -14.39867 -14.14002 -13.57035 -13.25006 -13.11319 -12.76428 -12.67170 -12.55155 -12.24265 -12.01600 -11.89178 -11.79509 -11.57317 -11.19073 -10.92692 -10.34290 -10.25066 -10.00660 -9.91396 -9.82112 -9.28801 -8.96954 -8.90145 -8.51005 -8.33472 -7.86934 -6.05742 -4.01402 0.81520 0.87145 3.23669 3.36005 3.45658 3.48577 3.95550 4.12483 4.30359 4.44336 4.47217 4.59289 4.84983 4.94136 5.01228 5.06182 5.20800 5.27912 5.50928 5.64548 5.70699 5.77667 5.84989 5.99301 6.04698 6.11879 6.15565 6.34745 6.52689 6.54794 6.67879 6.70640 6.87848 6.98109 7.06355 7.39276 7.47510 7.56482 7.62219 7.82014 7.96358 8.57397 8.98684 9.60597 11.07663 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.003543 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.689637 B = 7900.691767 C = 8105.849843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 C -0.134 4.134 4 C -0.513 4.513 5 H 0.070 0.930 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.889 3.111 9 H -0.287 1.287 10 H -0.309 1.309 11 H -0.248 1.248 12 C 0.084 3.916 13 N -0.679 5.679 14 C 0.034 3.966 15 C 0.152 3.848 16 H 0.107 0.893 17 O -0.537 6.537 18 C -0.145 4.145 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.095 4.095 22 C -0.153 4.153 23 C 0.106 3.894 24 F -0.136 7.136 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.338 0.662 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.372 0.628 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 0.151 24.451 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 C -0.191 4.191 4 C -0.551 4.551 5 H 0.088 0.912 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.044 4.044 13 N -0.311 5.311 14 C -0.097 4.097 15 C 0.092 3.908 16 H 0.125 0.875 17 O -0.341 6.341 18 C -0.147 4.147 19 C -0.101 4.101 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.172 4.172 23 C 0.086 3.914 24 F -0.114 7.114 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.157 0.843 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.220 0.780 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.337 0.695 24.201 24.248 hybrid contribution -0.422 -0.313 -0.350 0.631 sum 0.915 0.382 23.851 23.872 Atomic orbital electron populations 1.22297 0.98571 0.99121 1.00168 1.18458 0.91855 0.92642 0.93057 1.22153 1.00286 0.98076 0.98608 1.20869 1.33569 1.12063 0.88586 0.91170 1.24984 0.94740 0.97386 0.95803 1.69965 1.48870 1.35993 0.98695 0.87238 0.79385 0.85498 0.75691 1.21503 1.23807 1.17352 1.21976 0.99361 0.94494 0.88539 1.60522 1.16379 1.53460 1.00748 1.22559 1.00825 0.95628 0.90643 1.20701 0.99275 0.81987 0.88801 0.87514 1.86659 1.26593 1.24292 1.96606 1.20750 0.97086 0.97098 0.99795 1.20833 0.94628 0.99460 0.95205 1.21204 1.00489 0.96459 0.96411 1.21034 0.94217 0.96400 0.99658 1.21167 0.98756 1.01776 0.95510 1.17521 0.84920 0.95583 0.93354 1.91517 1.49204 1.88613 1.82067 0.95314 0.92778 0.94258 0.93734 0.95232 0.93558 0.92761 0.91887 0.96043 0.84322 0.94803 0.90813 0.78039 0.84839 0.85181 0.85028 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 7.24 37.16 0.27 -2.88 16 2 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 3 C -0.13 -3.00 7.54 37.16 0.28 -2.72 16 4 C -0.51 -14.31 8.62 -34.44 -0.30 -14.61 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.07 2.10 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 8 Si 0.89 22.40 22.79 -169.99 -3.87 18.53 16 9 H -0.29 -7.22 7.10 56.52 0.40 -6.82 16 10 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 11 H -0.25 -5.81 4.65 56.52 0.26 -5.55 16 12 C 0.08 1.68 4.57 -3.83 -0.02 1.67 16 13 N -0.68 -11.31 5.58 -113.79 -0.64 -11.94 16 14 C 0.03 0.46 5.33 -3.83 -0.02 0.44 16 15 C 0.15 1.86 3.19 -27.89 -0.09 1.77 16 16 H 0.11 1.39 7.79 -51.93 -0.40 0.98 16 17 O -0.54 -6.67 12.86 -35.23 -0.45 -7.13 16 18 C -0.15 -1.57 5.07 -104.56 -0.53 -2.10 16 19 C -0.08 -0.72 9.30 -39.59 -0.37 -1.09 16 20 C -0.13 -0.94 10.05 -39.57 -0.40 -1.33 16 21 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 22 C -0.15 -1.36 10.03 -39.52 -0.40 -1.75 16 23 C 0.11 1.17 7.24 -39.42 -0.29 0.88 16 24 F -0.14 -1.69 16.57 2.25 0.04 -1.65 16 25 H 0.03 0.55 7.06 -51.93 -0.37 0.18 16 26 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 27 H 0.04 0.83 8.12 -51.93 -0.42 0.40 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.69 2.26 -51.93 -0.12 0.58 16 30 H 0.05 0.95 7.60 -51.93 -0.39 0.55 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.34 5.61 7.00 -39.29 -0.28 5.34 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 37 H 0.37 3.42 7.32 45.56 0.33 3.76 16 38 H 0.13 0.89 6.41 -52.49 -0.34 0.56 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -31.69 323.77 -6.99 -38.68 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.28 Total: 5.50 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.43 Total: -19.96 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.14 Total: -38.85 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.45 Total: -7.13 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -3.87 Total: 18.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.69 -6.99 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819362990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.153 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds