Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99863 * 2 1 3 5 5 H 1.07999 * 119.99822 * 240.00491 * 4 2 1 6 6 C 1.37876 * 120.00339 * 60.00025 * 4 2 1 7 7 N 1.31514 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46692 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47025 * 120.00050 * 8 6 4 11 11 H 1.48505 * 109.46672 * 240.00052 * 8 6 4 12 12 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 13 13 N 1.46906 * 109.47378 * 299.99953 * 12 2 1 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.47138 * 180.02562 * 14 13 12 16 16 H 1.08993 * 109.46750 * 305.00146 * 15 14 13 17 17 O 1.42895 * 109.46833 * 64.99958 * 15 14 13 18 18 C 1.50691 * 109.47180 * 184.99974 * 15 14 13 19 19 C 1.38271 * 119.98758 * 279.72277 * 18 15 14 20 20 C 1.38223 * 120.05060 * 179.72398 * 19 18 15 21 21 C 1.38222 * 120.02646 * 0.55503 * 20 19 18 22 22 C 1.38443 * 119.97394 * 359.72137 * 21 20 19 23 23 F 1.35101 * 120.02539 * 180.02562 * 22 21 20 24 24 C 1.38183 * 119.98867 * 100.00313 * 18 15 14 25 25 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 26 26 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 27 27 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 30 30 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 31 31 H 0.97000 * 120.00540 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46862 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47250 * 60.00079 * 12 2 1 34 34 H 1.00904 * 110.99860 * 56.05050 * 13 12 2 35 35 H 1.08997 * 109.47334 * 299.99788 * 14 13 12 36 36 H 1.08995 * 109.47296 * 60.00089 * 14 13 12 37 37 H 0.96701 * 114.00463 * 60.00293 * 17 15 14 38 38 H 1.07996 * 119.97417 * 359.97438 * 19 18 15 39 39 H 1.07993 * 119.99037 * 180.27647 * 20 19 18 40 40 H 1.07997 * 120.01708 * 179.70022 * 21 20 19 41 41 H 1.08000 * 120.00870 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1455 -2.2878 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 6 2.0400 -0.7212 1.2492 13 7 1.5503 -0.0286 2.4487 14 6 2.0217 -0.6944 3.6703 15 6 1.4921 0.0535 4.8956 16 1 1.7806 1.1027 4.8334 17 8 0.0673 -0.0473 4.9359 18 6 2.0743 -0.5544 6.1455 19 6 1.5311 -1.7137 6.6679 20 6 2.0677 -2.2755 7.8111 21 6 3.1408 -1.6726 8.4400 22 6 3.6819 -0.5087 7.9211 23 9 4.7311 0.0812 8.5347 24 6 3.1471 0.0501 6.7725 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7096 1.1618 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -1.7488 1.2493 34 1 0.5437 0.0414 2.4402 35 1 1.6586 -1.7219 3.6874 36 1 3.1116 -0.6938 3.6869 37 1 -0.2615 -0.9550 4.9916 38 1 0.6895 -2.1827 6.1800 39 1 1.6455 -3.1834 8.2158 40 1 3.5569 -2.1091 9.3360 41 1 3.5680 0.9584 6.3671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819364596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = -97.094372 kcal Electronic energy + Delta-G solvation = -21708.486473 eV Core-core repulsion = 18308.574541 eV Total energy + Delta-G solvation = -3399.911932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92699 -40.65524 -38.79057 -37.70556 -35.21028 -33.16254 -32.38502 -31.38918 -28.74828 -27.49167 -27.23866 -25.61326 -23.80950 -23.70890 -22.13105 -20.32602 -18.89027 -18.00608 -17.64220 -17.27729 -17.12536 -16.68426 -16.62095 -16.45133 -15.82359 -15.42276 -15.06048 -14.73578 -14.39046 -14.27496 -14.09336 -13.81386 -13.39171 -13.25397 -13.03103 -12.89710 -12.75096 -12.60256 -12.50214 -12.44573 -12.10553 -12.07055 -11.91597 -11.32263 -11.30123 -10.81779 -10.58257 -10.34181 -9.97116 -9.68718 -9.16669 -7.96121 -6.13299 0.11890 0.20303 1.41551 1.44892 1.54176 2.46559 2.54394 3.08080 3.25962 3.34352 3.55317 3.80760 3.81670 4.03496 4.09485 4.20837 4.27378 4.42617 4.54077 4.61516 4.75344 4.77976 4.89078 4.92131 5.04022 5.07199 5.13624 5.19129 5.30228 5.32968 5.43972 5.48310 5.54584 5.70930 5.78181 5.89252 6.16382 6.25079 6.35240 6.50221 6.65136 6.76662 6.96893 7.54530 9.02185 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.003077 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.165982 B = 9097.378692 C = 9269.336160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.106 4.106 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.090 3.910 13 N -0.687 5.687 14 C 0.037 3.963 15 C 0.160 3.840 16 H 0.106 0.894 17 O -0.560 6.560 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.084 4.084 21 C -0.156 4.156 22 C 0.077 3.923 23 F -0.150 7.150 24 C -0.155 4.155 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.257 0.743 32 H 0.047 0.953 33 H 0.011 0.989 34 H 0.345 0.655 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.385 0.615 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -6.310 21.415 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 C -0.164 4.164 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.210 1.210 12 C -0.039 4.039 13 N -0.320 5.320 14 C -0.092 4.092 15 C 0.101 3.899 16 H 0.124 0.876 17 O -0.368 6.368 18 C -0.091 4.091 19 C -0.142 4.142 20 C -0.102 4.102 21 C -0.175 4.175 22 C 0.058 3.942 23 F -0.129 7.129 24 C -0.174 4.174 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.165 0.835 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.168 0.832 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.217 -5.073 21.259 21.890 hybrid contribution 0.220 -1.421 -1.023 1.765 sum 1.437 -6.494 20.236 21.301 Atomic orbital electron populations 1.21660 0.98080 0.98131 0.99981 1.18151 0.92484 0.92796 0.90753 1.21481 0.97024 0.98549 0.99380 1.21477 1.31173 1.11887 0.91968 0.93652 1.25549 0.95351 0.95646 1.01223 1.69978 1.37494 1.23612 1.23217 0.85712 0.78076 0.78740 0.80289 1.19582 1.20841 1.21016 1.21818 0.98209 0.93985 0.89866 1.60429 1.17072 1.53598 1.00883 1.22601 1.00923 0.95732 0.89993 1.20697 0.80269 1.00213 0.88761 0.87618 1.86659 1.19722 1.33906 1.96502 1.20379 0.95618 0.96104 0.97030 1.21315 1.00928 0.94886 0.97033 1.21357 0.94309 1.00201 0.94289 1.21487 0.98681 0.94802 1.02509 1.17937 0.87562 0.94723 0.93950 1.91477 1.55311 1.83759 1.82352 1.21121 0.98406 1.02216 0.95691 0.94797 0.92659 0.96263 0.97129 0.93337 0.94768 0.93340 0.93452 0.97032 0.83537 0.94167 0.90864 0.76496 0.83211 0.81707 0.82850 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 7.92 71.98 0.57 -5.08 16 2 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16 3 C -0.11 -5.23 8.09 71.98 0.58 -4.65 16 4 C -0.53 -28.38 8.01 25.60 0.21 -28.17 16 5 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.02 1.15 5.15 84.65 0.44 1.59 16 7 N -0.90 -50.61 9.35 21.45 0.20 -50.41 16 8 Si 0.94 43.28 29.54 68.60 2.03 45.31 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.09 3.65 4.59 86.30 0.40 4.05 16 13 N -0.69 -23.04 5.71 -513.88 -2.94 -25.97 16 14 C 0.04 0.96 5.34 86.31 0.46 1.42 16 15 C 0.16 3.55 3.45 29.85 0.10 3.65 16 16 H 0.11 2.62 8.00 -2.39 -0.02 2.60 16 17 O -0.56 -12.21 12.71 -148.98 -1.89 -14.10 16 18 C -0.09 -1.74 4.97 -19.87 -0.10 -1.84 16 19 C -0.12 -1.82 9.32 22.27 0.21 -1.61 16 20 C -0.08 -1.05 10.04 22.26 0.22 -0.82 16 21 C -0.16 -2.38 10.03 22.31 0.22 -2.15 16 22 C 0.08 1.56 7.30 22.38 0.16 1.72 16 23 F -0.15 -3.36 17.27 44.97 0.78 -2.59 16 24 C -0.16 -3.22 9.65 22.31 0.22 -3.00 16 25 H 0.03 1.40 6.57 -2.39 -0.02 1.38 16 26 H 0.05 2.91 6.07 -2.39 -0.01 2.90 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16 30 H 0.03 1.54 7.60 -2.39 -0.02 1.52 16 31 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.34 11.58 6.33 -89.69 -0.57 11.01 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.39 5.45 7.49 -74.06 -0.56 4.89 16 38 H 0.15 1.45 6.77 -2.91 -0.02 1.43 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.14 2.73 8.04 -2.91 -0.02 2.71 16 Total: -1.00 -61.59 334.30 1.75 -59.85 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.08 Total: 20.02 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.66 Total: -32.10 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.74 Total: -76.38 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.89 Total: -14.10 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -61.59 1.75 -59.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819364596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.248 kcal (2) G-P(sol) polarization free energy of solvation -61.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds