Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47144 * 240.00624 * 2 1 3 5 5 H 1.07997 * 119.99662 * 241.36302 * 4 2 1 6 6 C 1.37872 * 120.00267 * 61.35357 * 4 2 1 7 7 N 1.31512 * 120.00425 * 193.96213 * 6 4 2 8 8 Si 1.86806 * 119.99969 * 13.96638 * 6 4 2 9 9 H 1.48498 * 109.46777 * 84.55374 * 8 6 4 10 10 H 1.48504 * 109.47220 * 204.55260 * 8 6 4 11 11 H 1.48499 * 109.46972 * 324.55590 * 8 6 4 12 12 C 1.52996 * 109.47320 * 119.99964 * 2 1 3 13 13 N 1.46897 * 109.47382 * 300.00347 * 12 2 1 14 14 C 1.46900 * 110.99993 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47074 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.47369 * 60.00077 * 15 14 13 17 17 O 1.42901 * 109.47520 * 299.99841 * 15 14 13 18 18 C 1.50702 * 109.47465 * 179.97438 * 15 14 13 19 19 C 1.38260 * 119.99079 * 265.00427 * 18 15 14 20 20 C 1.38231 * 120.05058 * 180.02562 * 19 18 15 21 21 C 1.38216 * 120.02581 * 359.96030 * 20 19 18 22 22 C 1.38440 * 119.97646 * 0.02562 * 21 20 19 23 23 F 1.35097 * 120.02661 * 179.97438 * 22 21 20 24 24 C 1.38178 * 119.98230 * 84.72324 * 18 15 14 25 25 H 1.09000 * 109.47134 * 309.31185 * 1 2 3 26 26 H 1.09005 * 109.47129 * 69.31456 * 1 2 3 27 27 H 1.09004 * 109.46652 * 189.31239 * 1 2 3 28 28 H 1.08998 * 109.47217 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46914 * 300.00627 * 3 2 1 30 30 H 1.09002 * 109.46525 * 59.99926 * 3 2 1 31 31 H 0.97003 * 120.00743 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46988 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.47036 * 60.00472 * 12 2 1 34 34 H 1.00904 * 110.99878 * 303.95357 * 13 12 2 35 35 H 1.09002 * 109.46917 * 299.99791 * 14 13 12 36 36 H 1.09003 * 109.47234 * 60.00047 * 14 13 12 37 37 H 0.96699 * 113.99767 * 300.00219 * 17 15 14 38 38 H 1.07998 * 119.97741 * 359.97438 * 19 18 15 39 39 H 1.08002 * 119.98543 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.01455 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.01721 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6350 -1.6010 -1.1316 6 6 1.7225 -0.2231 -2.4825 7 7 1.9162 -0.9720 -3.5461 8 14 1.0277 1.5010 -2.6683 9 1 2.1418 2.4820 -2.7080 10 1 0.2471 1.5870 -3.9287 11 1 0.1418 1.8044 -1.5157 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0220 -0.6946 3.6702 15 6 1.4935 0.0538 4.8955 16 1 0.4035 0.0536 4.8792 17 8 1.9699 1.4009 4.8730 18 6 1.9767 -0.6295 6.1487 19 6 1.1740 -1.5605 6.7816 20 6 1.6158 -2.1876 7.9316 21 6 2.8611 -1.8852 8.4495 22 6 3.6658 -0.9534 7.8165 23 9 4.8829 -0.6566 8.3221 24 6 3.2242 -0.3296 6.6616 25 1 -0.3633 0.6511 0.7951 26 1 -0.3633 0.3630 -0.9615 27 1 -0.3633 -1.0142 0.1663 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6986 -0.6291 -4.4270 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7490 1.2492 34 1 1.8198 0.9436 2.4402 35 1 1.6589 -1.7223 3.6872 36 1 3.1119 -0.6940 3.6868 37 1 2.9337 1.4774 4.8858 38 1 0.2008 -1.7973 6.3778 39 1 0.9878 -2.9144 8.4253 40 1 3.2063 -2.3756 9.3477 41 1 3.8531 0.3941 6.1643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819364597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -59.670326 kcal Electronic energy + Delta-G solvation = -21834.489912 eV Core-core repulsion = 18436.200809 eV Total energy + Delta-G solvation = -3398.289103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.17853 -39.91629 -37.72255 -36.64854 -33.73456 -31.99722 -31.36795 -30.87818 -27.91236 -26.22283 -25.14761 -24.47853 -23.07178 -22.56995 -21.39061 -18.79866 -18.22180 -16.87671 -16.49268 -16.46054 -15.97499 -15.87249 -15.62568 -15.22461 -14.77906 -14.39102 -13.99343 -13.66411 -13.33702 -13.15527 -12.84558 -12.68581 -12.44762 -12.24631 -12.05224 -11.94568 -11.74431 -11.73305 -11.29164 -10.89114 -10.47466 -10.28737 -10.00388 -9.96442 -9.81901 -9.30888 -9.00319 -8.94605 -8.54992 -8.36680 -7.92880 -6.07794 -4.03677 0.80180 0.85314 3.20903 3.32485 3.41962 3.45812 3.84573 4.17826 4.25232 4.39993 4.44548 4.62094 4.77755 4.94478 5.00633 5.05850 5.16820 5.25547 5.44073 5.65172 5.70850 5.72882 5.80389 5.95622 5.98878 6.10273 6.19503 6.26678 6.45937 6.53759 6.59246 6.76256 6.82632 6.93876 7.06254 7.37653 7.40954 7.45960 7.60837 7.83699 7.92635 8.54973 8.96544 9.58354 11.05623 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034793 B = 0.003224 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.555151 B = 8682.208145 C = 8729.922607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.041 3.959 3 C -0.150 4.150 4 C -0.513 4.513 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.288 1.288 10 H -0.307 1.307 11 H -0.245 1.245 12 C 0.085 3.915 13 N -0.685 5.685 14 C 0.033 3.967 15 C 0.148 3.852 16 H 0.121 0.879 17 O -0.550 6.550 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.088 4.088 21 C -0.158 4.158 22 C 0.100 3.900 23 F -0.140 7.140 24 C -0.148 4.148 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.343 0.657 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.370 0.630 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 0.154 23.309 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 C -0.207 4.207 4 C -0.551 4.551 5 H 0.089 0.911 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.216 1.216 10 H -0.236 1.236 11 H -0.171 1.171 12 C -0.044 4.044 13 N -0.318 5.318 14 C -0.097 4.097 15 C 0.088 3.912 16 H 0.139 0.861 17 O -0.355 6.355 18 C -0.082 4.082 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.177 4.177 22 C 0.081 3.919 23 F -0.119 7.119 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.218 0.782 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.953 -0.058 23.107 23.127 hybrid contribution 1.618 0.954 -0.152 1.884 sum 0.664 0.897 22.956 22.983 Atomic orbital electron populations 1.22077 0.97404 0.99693 0.99299 1.18472 0.92951 0.91515 0.93088 1.22369 1.00278 0.99111 0.98912 1.20864 1.33656 1.12063 0.88565 0.91131 1.24976 0.94680 0.97365 0.95818 1.69962 1.48789 1.36006 0.98674 0.87304 0.79409 0.85511 0.76033 1.21613 1.23581 1.17087 1.21975 0.95989 0.97889 0.88509 1.60538 1.63647 1.06834 1.00812 1.22570 0.97189 0.99293 0.90685 1.21005 1.00170 0.81022 0.88967 0.86144 1.86675 1.26525 1.25580 1.96685 1.20523 0.93487 0.96771 0.97411 1.21125 1.00418 0.96510 0.95636 1.21034 0.95006 0.98935 0.95631 1.21171 0.95402 0.99266 1.01819 1.17651 0.81575 0.98135 0.94527 1.91507 1.41371 1.92285 1.86729 1.20864 0.97234 1.02192 0.96345 0.94836 0.93754 0.94128 0.93624 0.94200 0.94561 0.92733 0.96152 0.91727 0.83695 0.90132 0.95429 0.78216 0.84805 0.84775 0.84777 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.55 37.16 0.28 -2.53 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.15 -3.18 7.37 37.16 0.27 -2.91 16 4 C -0.51 -14.13 8.62 -34.44 -0.30 -14.42 16 5 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 6 C 0.07 2.10 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 8 Si 0.88 21.96 22.79 -169.99 -3.87 18.09 16 9 H -0.29 -7.11 7.10 56.52 0.40 -6.71 16 10 H -0.31 -7.76 7.11 56.52 0.40 -7.36 16 11 H -0.25 -5.67 4.65 56.52 0.26 -5.40 16 12 C 0.08 1.63 4.57 -3.83 -0.02 1.61 16 13 N -0.69 -10.85 5.90 -113.78 -0.67 -11.52 16 14 C 0.03 0.41 5.37 -3.83 -0.02 0.39 16 15 C 0.15 1.59 3.48 -27.88 -0.10 1.49 16 16 H 0.12 1.33 8.05 -51.93 -0.42 0.91 16 17 O -0.55 -6.20 12.47 -35.23 -0.44 -6.64 16 18 C -0.08 -0.78 5.00 -104.64 -0.52 -1.31 16 19 C -0.12 -1.01 9.68 -39.58 -0.38 -1.39 16 20 C -0.09 -0.67 10.04 -39.59 -0.40 -1.06 16 21 C -0.16 -1.32 10.03 -39.52 -0.40 -1.72 16 22 C 0.10 1.00 7.30 -39.42 -0.29 0.71 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.15 -1.43 9.31 -39.51 -0.37 -1.80 16 25 H 0.03 0.67 7.88 -51.93 -0.41 0.26 16 26 H 0.04 1.03 4.30 -51.93 -0.22 0.81 16 27 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.90 2.25 -51.93 -0.12 0.79 16 30 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.34 5.41 6.16 -39.29 -0.24 5.17 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.37 3.09 7.40 45.56 0.34 3.43 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.13 1.10 6.62 -52.48 -0.35 0.75 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -31.01 323.99 -6.96 -37.97 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.26 Total: 5.42 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.42 Total: -20.09 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.10 Total: -38.15 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.44 Total: -6.64 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -3.87 Total: 18.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.01 -6.96 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819364597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds