Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47144 * 240.00624 * 2 1 3 5 5 H 1.07997 * 119.99662 * 241.36302 * 4 2 1 6 6 C 1.37872 * 120.00267 * 61.35357 * 4 2 1 7 7 N 1.31512 * 120.00425 * 193.96213 * 6 4 2 8 8 Si 1.86806 * 119.99969 * 13.96638 * 6 4 2 9 9 H 1.48498 * 109.46777 * 84.55374 * 8 6 4 10 10 H 1.48504 * 109.47220 * 204.55260 * 8 6 4 11 11 H 1.48499 * 109.46972 * 324.55590 * 8 6 4 12 12 C 1.52996 * 109.47320 * 119.99964 * 2 1 3 13 13 N 1.46897 * 109.47382 * 300.00347 * 12 2 1 14 14 C 1.46900 * 110.99993 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47074 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.47369 * 60.00077 * 15 14 13 17 17 O 1.42901 * 109.47520 * 299.99841 * 15 14 13 18 18 C 1.50702 * 109.47465 * 179.97438 * 15 14 13 19 19 C 1.38260 * 119.99079 * 265.00427 * 18 15 14 20 20 C 1.38231 * 120.05058 * 180.02562 * 19 18 15 21 21 C 1.38216 * 120.02581 * 359.96030 * 20 19 18 22 22 C 1.38440 * 119.97646 * 0.02562 * 21 20 19 23 23 F 1.35097 * 120.02661 * 179.97438 * 22 21 20 24 24 C 1.38178 * 119.98230 * 84.72324 * 18 15 14 25 25 H 1.09000 * 109.47134 * 309.31185 * 1 2 3 26 26 H 1.09005 * 109.47129 * 69.31456 * 1 2 3 27 27 H 1.09004 * 109.46652 * 189.31239 * 1 2 3 28 28 H 1.08998 * 109.47217 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46914 * 300.00627 * 3 2 1 30 30 H 1.09002 * 109.46525 * 59.99926 * 3 2 1 31 31 H 0.97003 * 120.00743 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46988 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.47036 * 60.00472 * 12 2 1 34 34 H 1.00904 * 110.99878 * 303.95357 * 13 12 2 35 35 H 1.09002 * 109.46917 * 299.99791 * 14 13 12 36 36 H 1.09003 * 109.47234 * 60.00047 * 14 13 12 37 37 H 0.96699 * 113.99767 * 300.00219 * 17 15 14 38 38 H 1.07998 * 119.97741 * 359.97438 * 19 18 15 39 39 H 1.08002 * 119.98543 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.01455 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.01721 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6350 -1.6010 -1.1316 6 6 1.7225 -0.2231 -2.4825 7 7 1.9162 -0.9720 -3.5461 8 14 1.0277 1.5010 -2.6683 9 1 2.1418 2.4820 -2.7080 10 1 0.2471 1.5870 -3.9287 11 1 0.1418 1.8044 -1.5157 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0220 -0.6946 3.6702 15 6 1.4935 0.0538 4.8955 16 1 0.4035 0.0536 4.8792 17 8 1.9699 1.4009 4.8730 18 6 1.9767 -0.6295 6.1487 19 6 1.1740 -1.5605 6.7816 20 6 1.6158 -2.1876 7.9316 21 6 2.8611 -1.8852 8.4495 22 6 3.6658 -0.9534 7.8165 23 9 4.8829 -0.6566 8.3221 24 6 3.2242 -0.3296 6.6616 25 1 -0.3633 0.6511 0.7951 26 1 -0.3633 0.3630 -0.9615 27 1 -0.3633 -1.0142 0.1663 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6986 -0.6291 -4.4270 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7490 1.2492 34 1 1.8198 0.9436 2.4402 35 1 1.6589 -1.7223 3.6872 36 1 3.1119 -0.6940 3.6868 37 1 2.9337 1.4774 4.8858 38 1 0.2008 -1.7973 6.3778 39 1 0.9878 -2.9144 8.4253 40 1 3.2063 -2.3756 9.3477 41 1 3.8531 0.3941 6.1643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819364597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -81.841984 kcal Electronic energy + Delta-G solvation = -21835.451348 eV Core-core repulsion = 18436.200809 eV Total energy + Delta-G solvation = -3399.250538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.93308 -40.65601 -39.00391 -37.82569 -35.20322 -33.58174 -32.52224 -31.55077 -28.97658 -27.94448 -27.06418 -25.89211 -23.91335 -23.50455 -22.20012 -20.59226 -18.98460 -18.09083 -17.64108 -17.60081 -17.13712 -16.89242 -16.62748 -16.53168 -15.80962 -15.34921 -15.16412 -14.79938 -14.76073 -14.62145 -14.19969 -14.01274 -13.80031 -13.65416 -13.38002 -13.13521 -12.84868 -12.58340 -12.35976 -12.30731 -12.03560 -11.98254 -11.86142 -11.58348 -11.13965 -10.91921 -10.56134 -10.31489 -9.96488 -9.67556 -9.24080 -8.28778 -6.27953 0.12735 0.20389 1.36268 1.40144 1.50631 2.36604 2.54112 3.06132 3.09584 3.33354 3.49042 3.75077 3.83900 4.02904 4.11967 4.20081 4.25894 4.30082 4.39844 4.43441 4.56830 4.75746 4.78700 4.81957 4.88976 4.91288 5.05106 5.07943 5.12760 5.14117 5.18472 5.32639 5.34212 5.49481 5.62065 5.76406 5.88210 5.89895 6.14824 6.35548 6.58310 6.70289 6.79416 7.37623 8.88453 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034793 B = 0.003224 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.555151 B = 8682.208145 C = 8729.922607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 C -0.147 4.147 4 C -0.514 4.514 5 H 0.029 0.971 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.942 3.058 9 H -0.283 1.283 10 H -0.316 1.316 11 H -0.212 1.212 12 C 0.098 3.902 13 N -0.681 5.681 14 C 0.035 3.965 15 C 0.161 3.839 16 H 0.121 0.879 17 O -0.562 6.562 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.086 4.086 21 C -0.158 4.158 22 C 0.076 3.924 23 F -0.151 7.151 24 C -0.156 4.156 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.263 0.737 32 H 0.012 0.988 33 H 0.052 0.948 34 H 0.346 0.654 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.382 0.618 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 1.321 25.756 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.034 3.966 3 C -0.204 4.204 4 C -0.552 4.552 5 H 0.047 0.953 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.211 1.211 10 H -0.246 1.246 11 H -0.136 1.136 12 C -0.031 4.031 13 N -0.314 5.314 14 C -0.095 4.095 15 C 0.101 3.899 16 H 0.138 0.862 17 O -0.369 6.369 18 C -0.093 4.093 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.177 4.177 22 C 0.057 3.943 23 F -0.129 7.129 24 C -0.175 4.175 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.231 0.769 38 H 0.168 0.832 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.120 1.117 25.600 25.712 hybrid contribution 2.038 0.461 -0.835 2.251 sum -0.082 1.578 24.765 24.815 Atomic orbital electron populations 1.21989 0.96535 1.00058 0.99374 1.18474 0.93531 0.92430 0.92186 1.22291 1.00397 0.97803 0.99934 1.21228 1.32273 1.10863 0.90884 0.95303 1.25812 0.95518 1.01295 0.95461 1.70110 1.51279 1.38175 0.99311 0.86367 0.79332 0.80493 0.76569 1.21099 1.24577 1.13581 1.21634 0.95317 0.97202 0.88987 1.60439 1.63548 1.06870 1.00567 1.22624 0.97468 0.99393 0.90032 1.20805 1.00003 0.80643 0.88408 0.86153 1.86639 1.27794 1.25806 1.96658 1.20441 0.93810 0.97613 0.97393 1.21429 1.00946 0.95839 0.95766 1.21380 0.94861 0.98926 0.95191 1.21481 0.95472 0.98537 1.02188 1.17921 0.81722 0.99342 0.95268 1.91478 1.42042 1.92514 1.86906 1.21002 0.97530 1.02474 0.96499 0.92224 0.95125 0.94579 0.93665 0.95283 0.91144 0.92844 0.96977 0.92922 0.83327 0.90061 0.95109 0.76874 0.83177 0.81893 0.83049 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 7.55 71.98 0.54 -4.56 16 2 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 3 C -0.15 -5.85 7.37 71.98 0.53 -5.32 16 4 C -0.51 -28.79 8.62 25.60 0.22 -28.57 16 5 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 6 C 0.02 0.93 5.32 84.65 0.45 1.38 16 7 N -0.95 -59.83 13.96 21.44 0.30 -59.53 16 8 Si 0.94 44.96 22.79 68.60 1.56 46.52 16 9 H -0.28 -13.21 7.10 99.48 0.71 -12.50 16 10 H -0.32 -15.45 7.11 99.48 0.71 -14.75 16 11 H -0.21 -8.95 4.65 99.48 0.46 -8.49 16 12 C 0.10 3.67 4.57 86.30 0.39 4.06 16 13 N -0.68 -19.87 5.90 -513.90 -3.03 -22.90 16 14 C 0.03 0.79 5.37 86.30 0.46 1.26 16 15 C 0.16 3.07 3.48 29.85 0.10 3.17 16 16 H 0.12 2.31 8.05 -2.38 -0.02 2.30 16 17 O -0.56 -11.30 12.47 -148.98 -1.86 -13.16 16 18 C -0.09 -1.58 5.00 -19.87 -0.10 -1.68 16 19 C -0.12 -1.74 9.68 22.27 0.22 -1.53 16 20 C -0.09 -1.05 10.04 22.26 0.22 -0.82 16 21 C -0.16 -2.31 10.03 22.31 0.22 -2.09 16 22 C 0.08 1.43 7.30 22.38 0.16 1.60 16 23 F -0.15 -3.17 17.27 44.97 0.78 -2.39 16 24 C -0.16 -2.81 9.31 22.31 0.21 -2.61 16 25 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 26 H 0.03 1.34 4.30 -2.38 -0.01 1.33 16 27 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.03 1.22 2.25 -2.39 -0.01 1.21 16 30 H 0.07 2.31 6.57 -2.39 -0.02 2.30 16 31 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.35 9.78 6.16 -89.69 -0.55 9.23 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.38 5.56 7.40 -74.06 -0.55 5.01 16 38 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 2.15 6.62 -2.91 -0.02 2.13 16 Total: -1.00 -67.75 323.99 1.07 -66.68 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.29 Total: 18.98 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.61 Total: -34.21 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.73 Total: -82.43 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.86 Total: -13.16 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.56 Total: 46.52 kcal Total: -67.75 1.07 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819364597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.159 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds