Wall clock time and date at job start Tue Mar 31 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46901 * 110.99847 * 66.04936 * 8 7 6 10 10 C 1.46905 * 111.00046 * 189.99871 * 8 7 6 11 11 H 1.08997 * 109.46736 * 55.00328 * 10 8 7 12 12 C 1.52995 * 109.47102 * 295.00306 * 10 8 7 13 13 C 1.52996 * 109.46974 * 174.99989 * 10 8 7 14 14 C 1.50699 * 109.47544 * 295.00195 * 13 10 8 15 15 H 1.07999 * 119.99938 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00199 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99936 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00177 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47434 * 90.00014 * 18 16 14 20 20 H 1.48502 * 109.46937 * 210.00029 * 18 16 14 21 21 H 1.48500 * 109.46978 * 329.99894 * 18 16 14 22 22 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 23 23 C 1.38326 * 120.03416 * 359.95854 * 22 6 5 24 24 F 1.35098 * 120.05006 * 179.97438 * 23 22 6 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 28 28 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 29 29 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 31 31 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 32 32 H 1.08997 * 109.47601 * 59.99828 * 9 8 7 33 33 H 1.09000 * 109.47165 * 180.02562 * 9 8 7 34 34 H 1.09007 * 109.46972 * 299.99676 * 9 8 7 35 35 H 1.08999 * 109.47460 * 59.99990 * 12 10 8 36 36 H 1.08999 * 109.46854 * 179.97438 * 12 10 8 37 37 H 1.09005 * 109.47425 * 299.99933 * 12 10 8 38 38 H 1.09000 * 109.47000 * 55.00368 * 13 10 8 39 39 H 1.09001 * 109.46894 * 175.00094 * 13 10 8 40 40 H 0.97003 * 120.00361 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.98065 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 2.9320 5.7046 -2.0872 10 6 5.0762 6.6349 -1.4550 11 1 6.0060 6.4263 -0.9259 12 6 4.3666 7.8174 -0.7925 13 6 5.3854 6.9778 -2.9137 14 6 6.1916 5.8645 -3.5314 15 1 6.4566 4.9987 -2.9427 16 6 6.5910 5.9512 -4.8482 17 7 6.2679 7.0053 -5.5653 18 14 7.5897 4.5709 -5.6142 19 1 6.6719 3.5716 -6.2175 20 1 8.4769 5.1273 -6.6671 21 1 8.4145 3.9166 -4.5668 22 6 4.0580 2.5196 -0.0058 23 6 3.4334 1.2855 -0.0001 24 9 4.1713 0.1538 0.0047 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.2138 2.3201 -0.0063 29 1 1.3344 4.5114 -0.0166 30 1 3.3564 5.7503 0.4934 31 1 4.9431 4.9440 0.4974 32 1 2.3872 6.4884 -1.5611 33 1 3.1255 6.0212 -3.1121 34 1 2.3368 4.7914 -2.0957 35 1 4.1462 7.5731 0.2466 36 1 5.0113 8.6954 -0.8301 37 1 3.4367 8.0260 -1.3217 38 1 4.4524 7.0993 -3.4640 39 1 5.9556 7.9058 -2.9557 40 1 6.5485 7.0661 -6.4919 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839460122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:58 Heat of formation + Delta-G solvation = -53.581579 kcal Electronic energy + Delta-G solvation = -22204.353464 eV Core-core repulsion = 18806.328389 eV Total energy + Delta-G solvation = -3398.025075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.66733 -40.12940 -38.49223 -36.95212 -33.02860 -31.59565 -30.76577 -29.59108 -27.79460 -27.39308 -26.40301 -24.08345 -22.75939 -22.70160 -20.98393 -18.76811 -18.32218 -16.91440 -16.72389 -16.22195 -16.15209 -15.57430 -15.02984 -14.85134 -14.67833 -14.33130 -14.21449 -13.96346 -13.38597 -13.15605 -12.62005 -12.41356 -12.27751 -12.15622 -11.74209 -11.69913 -11.50523 -11.33012 -11.15964 -11.01137 -10.87357 -10.64600 -10.60200 -10.37126 -9.94693 -9.18872 -8.98747 -8.86695 -8.24962 -8.12860 -7.48787 -5.87942 -3.85714 1.16476 1.24737 3.03016 3.41700 3.47569 3.52098 3.53923 4.24077 4.57964 4.62127 4.68105 4.78297 4.91719 4.95008 5.12879 5.23716 5.27924 5.48394 5.51506 5.56270 5.70750 5.76581 5.90458 5.91986 5.97301 6.03698 6.07776 6.12976 6.20387 6.44393 6.59410 6.63475 6.65344 6.75067 6.96115 7.20334 7.52033 7.66591 7.89052 7.99942 8.13431 8.58418 9.20546 9.76481 11.23980 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.004690 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.933730 B = 5969.048835 C = 6926.460218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.086 3.914 4 C -0.183 4.183 5 C -0.084 4.084 6 C -0.071 4.071 7 C 0.090 3.910 8 N -0.508 5.508 9 C 0.022 3.978 10 C 0.086 3.914 11 H 0.071 0.929 12 C -0.185 4.185 13 C 0.028 3.972 14 C -0.491 4.491 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.904 5.904 18 Si 0.889 3.111 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.093 4.093 23 C 0.068 3.932 24 F -0.135 7.135 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.015 0.985 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.257 0.743 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 -7.661 13.766 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.040 3.960 4 C -0.202 4.202 5 C -0.103 4.103 6 C -0.071 4.071 7 C -0.037 4.037 8 N -0.231 5.231 9 C -0.126 4.126 10 C -0.022 4.022 11 H 0.089 0.911 12 C -0.244 4.244 13 C -0.009 4.009 14 C -0.529 4.529 15 H 0.079 0.921 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.717 3.283 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.112 4.112 23 C 0.048 3.952 24 F -0.114 7.114 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.944 -8.204 13.340 19.696 hybrid contribution -0.073 -0.153 -0.217 0.275 sum -12.017 -8.357 13.123 19.659 Atomic orbital electron populations 1.23068 0.78273 1.03966 1.01416 1.86115 1.21449 1.26082 1.89034 1.18957 0.90793 0.85447 1.00821 1.21030 0.99930 0.91461 1.07767 1.20914 0.94103 0.97058 0.98223 1.19640 0.92918 0.95116 0.99466 1.21054 0.99353 0.91257 0.92080 1.62156 1.14237 1.35309 1.11425 1.22471 0.90478 0.98879 1.00807 1.21962 0.94018 0.85634 1.00568 0.91115 1.22531 1.01613 1.00858 0.99376 1.19237 0.97006 0.96743 0.87869 1.21180 1.31700 1.04248 0.95809 0.92090 1.24992 0.96669 0.95628 0.97509 1.69963 1.47463 1.28602 1.08513 0.86645 0.80163 0.82519 0.78950 1.20915 1.21631 1.19965 1.20940 1.01389 0.89410 0.99454 1.16969 0.85842 0.83013 1.09367 1.91484 1.76486 1.49078 1.94355 0.92468 0.88214 0.92627 0.84820 0.85390 0.94317 0.90197 0.96662 0.89746 0.92569 0.94123 0.92485 0.92856 0.96115 0.96300 0.93337 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.02 10.36 -19.58 -0.20 -4.22 16 3 C 0.09 1.17 6.69 -39.17 -0.26 0.91 16 4 C -0.18 -2.11 9.04 -39.45 -0.36 -2.47 16 5 C -0.08 -1.02 7.95 -39.60 -0.31 -1.34 16 6 C -0.07 -0.98 4.88 -104.61 -0.51 -1.49 16 7 C 0.09 1.31 4.55 -4.98 -0.02 1.29 16 8 N -0.51 -9.27 4.46 -236.34 -1.05 -10.33 16 9 C 0.02 0.38 8.33 60.07 0.50 0.88 16 10 C 0.09 1.68 2.29 -67.71 -0.16 1.53 16 11 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 12 C -0.18 -3.02 8.50 37.15 0.32 -2.71 16 13 C 0.03 0.71 4.27 -27.89 -0.12 0.59 16 14 C -0.49 -13.66 8.84 -34.44 -0.30 -13.96 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 18 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.09 -1.36 9.67 -39.54 -0.38 -1.74 16 23 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 24 F -0.14 -2.19 17.11 2.25 0.04 -2.15 16 25 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 28 H 0.13 1.15 6.30 -52.48 -0.33 0.82 16 29 H 0.13 1.33 8.03 -52.49 -0.42 0.91 16 30 H 0.04 0.51 6.88 -51.93 -0.36 0.16 16 31 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.02 0.23 6.51 -51.93 -0.34 -0.11 16 33 H 0.08 1.72 6.03 -51.93 -0.31 1.41 16 34 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 35 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.87 6.48 -51.93 -0.34 0.53 16 38 H 0.02 0.54 6.10 -51.93 -0.32 0.23 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.43 332.74 -7.43 -38.86 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.94 Total: -2.79 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.00 Total: -15.19 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.32 Total: -36.78 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.43 -7.43 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839460122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.718 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds