Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35959 * 116.99481 * 2 1 4 4 C 1.38662 * 120.06271 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.96569 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.10069 * 0.26488 * 5 4 3 7 7 C 1.50698 * 119.94071 * 179.74301 * 6 5 4 8 8 N 1.46903 * 109.47175 * 89.99399 * 7 6 5 9 9 C 1.46901 * 110.99704 * 66.04792 * 8 7 6 10 10 C 1.46899 * 111.00124 * 190.00032 * 8 7 6 11 11 H 1.09001 * 109.46947 * 188.82784 * 10 8 7 12 12 C 1.53002 * 109.46961 * 308.82515 * 10 8 7 13 13 C 1.53001 * 109.47084 * 68.82328 * 10 8 7 14 14 C 1.50701 * 109.46752 * 62.93034 * 13 10 8 15 15 H 1.08005 * 120.00287 * 355.12256 * 14 13 10 16 16 C 1.37878 * 119.99983 * 175.12250 * 14 13 10 17 17 N 1.31510 * 119.99717 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47309 * 119.99870 * 18 16 14 21 21 H 1.48504 * 109.47476 * 239.99952 * 18 16 14 22 22 C 1.38259 * 120.12411 * 359.48247 * 6 5 4 23 23 C 1.38336 * 120.02581 * 0.51325 * 22 6 5 24 24 F 1.35109 * 120.04559 * 179.72671 * 23 22 6 25 25 H 1.08994 * 109.47676 * 300.00100 * 1 2 3 26 26 H 1.08999 * 109.47074 * 60.00738 * 1 2 3 27 27 H 1.09010 * 109.46497 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.01529 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.94733 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47418 * 209.99323 * 7 6 5 31 31 H 1.09000 * 109.46806 * 329.99877 * 7 6 5 32 32 H 1.08997 * 109.47420 * 53.79439 * 9 8 7 33 33 H 1.09007 * 109.47005 * 173.79096 * 9 8 7 34 34 H 1.09001 * 109.47543 * 293.78933 * 9 8 7 35 35 H 1.09005 * 109.47041 * 179.97438 * 12 10 8 36 36 H 1.08998 * 109.47568 * 299.99878 * 12 10 8 37 37 H 1.09001 * 109.47070 * 60.00344 * 12 10 8 38 38 H 1.08996 * 109.47178 * 182.92575 * 13 10 8 39 39 H 1.08999 * 109.46949 * 302.93087 * 13 10 8 40 40 H 0.97007 * 119.99719 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.98870 * 180.23788 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2921 2.3751 -0.0005 5 6 1.9214 3.6053 0.0000 6 6 3.3021 3.6779 -0.0045 7 6 3.9846 5.0215 -0.0097 8 7 4.2106 5.4613 1.3736 9 6 5.1718 4.5837 2.0546 10 6 4.6546 6.8610 1.4151 11 1 4.9640 7.1141 2.4291 12 6 5.8345 7.0502 0.4596 13 6 3.5028 7.7742 0.9903 14 6 2.3678 7.6411 1.9726 15 1 2.4262 6.9153 2.7703 16 6 1.2546 8.4459 1.8531 17 7 1.1837 9.3300 0.8821 18 14 -0.1520 8.2814 3.0711 19 1 0.1720 7.2233 4.0615 20 1 -0.3508 9.5737 3.7752 21 1 -1.3953 7.9167 2.3453 22 6 4.0578 2.5202 0.0013 23 6 3.4332 1.2858 0.0009 24 9 4.1714 0.1542 0.0010 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2135 2.3200 -0.0005 29 1 1.3338 4.5115 -0.0008 30 1 4.9411 4.9411 -0.5262 31 1 3.3541 5.7472 -0.5233 32 1 6.0849 4.5167 1.4633 33 1 5.4048 4.9935 3.0375 34 1 4.7389 3.5899 2.1687 35 1 6.1637 8.0890 0.4900 36 1 6.6551 6.3997 0.7621 37 1 5.5251 6.7972 -0.5545 38 1 3.8471 8.8082 0.9709 39 1 3.1590 7.4870 -0.0034 40 1 0.4004 9.8959 0.7978 41 1 5.1362 2.5794 0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839460123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = -55.399115 kcal Electronic energy + Delta-G solvation = -22400.296269 eV Core-core repulsion = 19002.192379 eV Total energy + Delta-G solvation = -3398.103890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.66129 -40.02361 -38.46294 -36.84694 -32.99618 -31.47740 -30.60504 -29.90901 -27.89295 -27.28358 -26.10010 -24.08719 -22.67268 -22.49985 -21.22671 -18.82862 -18.19813 -16.84524 -16.70146 -16.18356 -16.11264 -15.21273 -15.01677 -14.73220 -14.67877 -14.36623 -14.13971 -14.09576 -13.35956 -12.93567 -12.73303 -12.27481 -12.16384 -12.11608 -11.91142 -11.68792 -11.45408 -11.28963 -11.13939 -10.99234 -10.87069 -10.67930 -10.63413 -10.40050 -9.95727 -9.22504 -8.98342 -8.79729 -8.29444 -8.01182 -7.50238 -5.91102 -3.88542 1.26600 1.36027 3.11077 3.35109 3.43443 3.49313 3.66131 4.30432 4.54097 4.68485 4.78151 4.90213 5.02875 5.07858 5.24096 5.33479 5.39966 5.45648 5.57072 5.63053 5.70412 5.76902 5.82662 5.98732 5.99859 6.07994 6.21874 6.22457 6.30697 6.36413 6.50573 6.62548 6.73665 6.82054 6.95347 7.29863 7.50804 7.63312 7.85949 7.98749 8.10636 8.57370 9.19202 9.73483 11.20818 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.005347 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.680625 B = 5235.781640 C = 6602.919778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.085 3.915 4 C -0.182 4.182 5 C -0.059 4.059 6 C -0.071 4.071 7 C 0.094 3.906 8 N -0.508 5.508 9 C 0.021 3.979 10 C 0.085 3.915 11 H 0.071 0.929 12 C -0.184 4.184 13 C 0.030 3.970 14 C -0.488 4.488 15 H 0.063 0.937 16 C 0.050 3.950 17 N -0.904 5.904 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.113 4.113 23 C 0.060 3.940 24 F -0.139 7.139 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.015 0.985 40 H 0.256 0.744 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -14.531 -3.157 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.039 3.961 4 C -0.201 4.201 5 C -0.078 4.078 6 C -0.072 4.072 7 C -0.033 4.033 8 N -0.231 5.231 9 C -0.128 4.128 10 C -0.022 4.022 11 H 0.090 0.910 12 C -0.243 4.243 13 C -0.008 4.008 14 C -0.527 4.527 15 H 0.081 0.919 16 C -0.149 4.149 17 N -0.545 5.545 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.133 4.133 23 C 0.040 3.960 24 F -0.118 7.118 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.429 -14.658 -2.955 15.149 hybrid contribution -0.229 -0.048 0.257 0.347 sum 2.201 -14.707 -2.698 15.113 Atomic orbital electron populations 1.23076 0.78200 1.03851 1.01662 1.86090 1.21522 1.26166 1.89120 1.18958 0.90735 0.85452 1.00912 1.21167 1.00186 0.91478 1.07276 1.21118 0.94255 0.97534 0.94858 1.19702 0.93540 0.94518 0.99395 1.21076 0.98421 0.92550 0.91263 1.62119 1.44692 1.02423 1.13890 1.22452 0.93604 0.97968 0.98730 1.21989 0.94587 0.87493 0.98164 0.91041 1.22537 0.99358 1.01468 1.00960 1.19208 0.91631 0.93229 0.96689 1.21233 1.01021 1.17950 1.12454 0.91900 1.25002 0.98516 0.95690 0.95674 1.69973 1.29319 1.23119 1.32073 0.86627 0.82597 0.77713 0.81600 1.19759 1.21416 1.21379 1.20902 1.00600 0.89878 1.01900 1.16870 0.85859 0.82731 1.10491 1.91463 1.76520 1.49267 1.94561 0.92389 0.92481 0.88297 0.84679 0.83972 0.94575 0.88407 0.96584 0.91947 0.92124 0.92456 0.94151 0.92838 0.95941 0.96709 0.93401 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.25 10.36 -19.61 -0.20 -4.46 16 3 C 0.09 1.23 6.69 -39.18 -0.26 0.97 16 4 C -0.18 -2.49 9.04 -39.44 -0.36 -2.85 16 5 C -0.06 -0.90 9.69 -39.59 -0.38 -1.29 16 6 C -0.07 -1.09 4.89 -104.61 -0.51 -1.60 16 7 C 0.09 1.55 3.97 -4.98 -0.02 1.53 16 8 N -0.51 -9.21 4.30 -236.33 -1.02 -10.23 16 9 C 0.02 0.32 8.63 60.07 0.52 0.84 16 10 C 0.09 1.66 2.27 -67.71 -0.15 1.51 16 11 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 12 C -0.18 -3.01 8.41 37.16 0.31 -2.70 16 13 C 0.03 0.71 4.40 -27.88 -0.12 0.59 16 14 C -0.49 -13.16 8.80 -34.44 -0.30 -13.46 16 15 H 0.06 1.72 7.69 -52.48 -0.40 1.31 16 16 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 17 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.11 -1.62 8.08 -39.54 -0.32 -1.94 16 23 C 0.06 0.90 7.31 -39.30 -0.29 0.62 16 24 F -0.14 -2.16 17.11 2.25 0.04 -2.12 16 25 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 26 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 29 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.04 0.54 6.71 -51.93 -0.35 0.20 16 31 H 0.10 1.80 6.12 -51.93 -0.32 1.48 16 32 H 0.02 0.22 7.09 -51.93 -0.37 -0.15 16 33 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 34 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.59 7.02 -51.93 -0.36 0.22 16 37 H 0.05 0.86 6.54 -51.93 -0.34 0.52 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.01 0.37 6.36 -51.93 -0.33 0.04 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.14 1.71 8.02 -52.49 -0.42 1.29 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -30.12 333.67 -7.44 -37.56 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.00 Total: -1.31 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -0.99 Total: -15.23 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.28 Total: -35.95 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.12 -7.44 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839460123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.839 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds