Wall clock time and date at job start Tue Mar 31 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47078 * 2 1 4 4 N 1.46895 * 109.47450 * 119.99827 * 2 1 3 5 5 C 1.46900 * 111.00179 * 275.00013 * 4 2 1 6 6 C 1.53002 * 109.47311 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47216 * 300.00514 * 6 5 4 8 8 C 1.53003 * 109.46868 * 60.00382 * 6 5 4 9 9 C 1.50693 * 109.47320 * 180.02562 * 6 5 4 10 10 H 1.08003 * 119.99776 * 1.24321 * 9 6 5 11 11 C 1.37876 * 120.00215 * 181.24505 * 9 6 5 12 12 N 1.31519 * 119.99854 * 194.11188 * 11 9 6 13 13 Si 1.86794 * 119.99917 * 14.11163 * 11 9 6 14 14 H 1.48502 * 109.47504 * 84.53546 * 13 11 9 15 15 H 1.48504 * 109.47016 * 204.53725 * 13 11 9 16 16 H 1.48498 * 109.47390 * 324.53454 * 13 11 9 17 17 C 1.50705 * 109.47106 * 240.00278 * 2 1 3 18 18 C 1.38178 * 119.99588 * 264.99453 * 17 2 1 19 19 C 1.38210 * 120.07344 * 179.97438 * 18 17 2 20 20 C 1.38523 * 120.08858 * 359.97438 * 19 18 17 21 21 F 1.35092 * 119.99787 * 180.02562 * 20 19 18 22 22 C 1.38345 * 120.00134 * 359.97438 * 20 19 18 23 23 C 1.38702 * 119.92140 * 0.02584 * 22 20 19 24 24 O 1.35897 * 120.04268 * 180.02562 * 23 22 20 25 25 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46749 * 299.99971 * 1 2 3 27 27 H 1.09004 * 109.47043 * 59.99829 * 1 2 3 28 28 H 1.00905 * 110.99966 * 38.95243 * 4 2 1 29 29 H 1.08994 * 109.47423 * 300.00101 * 5 4 2 30 30 H 1.09007 * 109.47320 * 59.99924 * 5 4 2 31 31 H 1.08994 * 109.47338 * 69.51405 * 7 6 5 32 32 H 1.08998 * 109.47143 * 189.51651 * 7 6 5 33 33 H 1.09000 * 109.46773 * 309.51328 * 7 6 5 34 34 H 1.09000 * 109.47234 * 59.99626 * 8 6 5 35 35 H 1.08993 * 109.46896 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.47101 * 300.00001 * 8 6 5 37 37 H 0.97007 * 119.99388 * 179.97438 * 12 11 9 38 38 H 1.08000 * 119.96517 * 0.02562 * 18 17 2 39 39 H 1.08001 * 119.95533 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.03534 * 179.74466 * 22 20 19 41 41 H 0.96695 * 114.00468 * 89.99818 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0826 0.2227 2.3468 6 6 2.5952 -0.5331 3.5744 7 6 1.6454 -1.6889 3.8952 8 6 3.9924 -1.0861 3.2861 9 6 2.6591 0.4055 4.7517 10 1 2.3446 1.4328 4.6409 11 6 3.1190 -0.0471 5.9701 12 7 2.9209 0.6693 7.0551 13 14 4.0235 -1.6778 6.0797 14 1 5.4596 -1.4696 5.7644 15 1 3.8927 -2.2249 7.4541 16 1 3.4372 -2.6354 5.1079 17 6 2.0323 -0.7104 -1.2305 18 6 2.3610 -2.0510 -1.1684 19 6 2.8214 -2.7042 -2.2961 20 6 2.9539 -2.0168 -3.4914 21 9 3.4035 -2.6572 -4.5926 22 6 2.6248 -0.6747 -3.5576 23 6 2.1628 -0.0189 -2.4261 24 8 1.8382 1.2993 -2.4885 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.4496 -1.4979 1.4101 29 1 2.7588 1.0463 2.1182 30 1 1.0871 0.6164 2.5526 31 1 1.7263 -2.4513 3.1205 32 1 1.9120 -2.1212 4.8596 33 1 0.6214 -1.3175 3.9341 34 1 4.6690 -0.2627 3.0575 35 1 4.3574 -1.6248 4.1604 36 1 3.9458 -1.7651 2.4347 37 1 3.2442 0.3506 7.9124 38 1 2.2574 -2.5893 -0.2379 39 1 3.0782 -3.7521 -2.2453 40 1 2.7318 -0.1372 -4.4882 41 1 0.9147 1.4664 -2.7211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840786759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:50 Heat of formation + Delta-G solvation = -51.510789 kcal Electronic energy + Delta-G solvation = -22376.513164 eV Core-core repulsion = 18978.577884 eV Total energy + Delta-G solvation = -3397.935279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.03572 -40.13893 -37.58323 -36.65010 -35.03226 -31.90841 -30.53791 -30.08078 -28.49064 -26.21911 -25.27169 -24.47475 -23.55239 -22.70006 -20.64187 -19.03259 -18.64674 -16.92623 -16.75208 -16.16127 -15.88477 -15.74055 -15.21396 -15.00810 -14.57493 -14.27753 -13.96725 -13.64757 -13.25103 -13.13705 -12.80260 -12.65711 -12.44985 -12.22622 -11.86662 -11.80216 -11.75824 -11.59934 -11.05580 -11.00183 -10.75493 -10.30274 -10.06657 -9.98625 -9.87952 -9.06041 -8.98041 -8.59737 -8.55495 -8.36517 -7.95679 -6.08574 -4.04309 0.94581 1.05072 3.32297 3.32510 3.41575 3.45452 3.79623 4.32352 4.39857 4.43858 4.68154 4.79495 4.87635 5.21910 5.23690 5.25599 5.29539 5.58160 5.61868 5.78843 5.89149 5.90802 5.97603 6.07688 6.09438 6.22910 6.28186 6.37943 6.51988 6.60876 6.63506 6.65826 6.82868 6.90936 7.01480 7.34580 7.41512 7.46637 7.56901 7.75305 7.91378 8.54184 8.96184 9.57626 11.04804 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.004120 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.569529 B = 6794.994266 C = 7370.098464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.094 0.906 4 N -0.684 5.684 5 C 0.086 3.914 6 C 0.040 3.960 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.513 4.513 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.888 3.112 14 H -0.287 1.287 15 H -0.309 1.309 16 H -0.249 1.249 17 C -0.094 4.094 18 C -0.052 4.052 19 C -0.163 4.163 20 C 0.103 3.897 21 F -0.142 7.142 22 C -0.185 4.185 23 C 0.133 3.867 24 O -0.490 6.490 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 -4.941 -19.915 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.011 3.989 3 H 0.112 0.888 4 N -0.314 5.314 5 C -0.042 4.042 6 C 0.039 3.961 7 C -0.201 4.201 8 C -0.192 4.192 9 C -0.551 4.551 10 H 0.089 0.911 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.215 1.215 15 H -0.238 1.238 16 H -0.174 1.174 17 C -0.095 4.095 18 C -0.070 4.070 19 C -0.182 4.182 20 C 0.083 3.917 21 F -0.120 7.120 22 C -0.204 4.204 23 C 0.088 3.912 24 O -0.300 6.300 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.568 -4.756 -19.755 20.631 hybrid contribution -0.679 -0.805 0.062 1.054 sum -4.247 -5.561 -19.693 20.899 Atomic orbital electron populations 1.22443 0.96515 1.02137 1.02249 1.20316 0.92251 0.98083 0.88246 0.88758 1.60694 1.56270 1.10351 1.04134 1.21989 0.98763 0.94517 0.88955 1.18471 0.91508 0.93280 0.92825 1.22293 0.99539 0.98057 1.00163 1.22164 0.98954 0.99644 0.98414 1.20853 1.43992 0.97725 0.92483 0.91101 1.24982 0.95538 0.96984 0.95373 1.69971 1.45301 1.39547 0.98601 0.87250 0.80304 0.85423 0.74866 1.21523 1.23800 1.17447 1.20355 1.00292 0.94095 0.94778 1.20823 0.94952 0.93526 0.97743 1.21211 1.03962 1.01273 0.91741 1.17443 1.00252 0.90592 0.83371 1.91488 1.86859 1.81772 1.51928 1.21254 1.05844 0.93319 0.99982 1.17924 0.98629 0.83226 0.91395 1.84825 1.33040 1.19865 1.92265 0.92442 0.91623 0.92739 0.84389 0.91680 0.95683 0.95511 0.92792 0.94195 0.93611 0.95208 0.93842 0.92752 0.83895 0.84685 0.84496 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.14 37.16 0.34 -1.51 16 2 C 0.12 1.54 2.52 -68.87 -0.17 1.37 16 3 H 0.09 1.33 7.35 -51.93 -0.38 0.95 16 4 N -0.68 -10.26 4.47 -107.95 -0.48 -10.74 16 5 C 0.09 1.60 4.37 -3.82 -0.02 1.58 16 6 C 0.04 0.88 0.57 -155.66 -0.09 0.80 16 7 C -0.14 -2.92 7.24 37.16 0.27 -2.65 16 8 C -0.13 -2.91 7.54 37.16 0.28 -2.63 16 9 C -0.51 -13.88 8.62 -34.44 -0.30 -14.18 16 10 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 11 C 0.07 2.07 5.32 -17.82 -0.09 1.97 16 12 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 13 Si 0.89 21.87 22.79 -169.99 -3.87 18.00 16 14 H -0.29 -7.12 7.10 56.52 0.40 -6.72 16 15 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 16 H -0.25 -5.62 4.65 56.52 0.26 -5.36 16 17 C -0.09 -1.13 5.07 -104.46 -0.53 -1.66 16 18 C -0.05 -0.60 9.31 -39.61 -0.37 -0.97 16 19 C -0.16 -1.77 10.02 -39.49 -0.40 -2.17 16 20 C 0.10 1.17 7.30 -39.44 -0.29 0.89 16 21 F -0.14 -1.67 17.27 2.25 0.04 -1.64 16 22 C -0.18 -2.02 9.97 -39.37 -0.39 -2.41 16 23 C 0.13 1.51 6.68 -39.23 -0.26 1.25 16 24 O -0.49 -4.94 12.64 -19.42 -0.25 -5.18 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.34 4.76 6.16 -39.29 -0.24 4.52 16 29 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 30 H 0.02 0.47 7.44 -51.92 -0.39 0.08 16 31 H 0.03 0.46 7.05 -51.93 -0.37 0.10 16 32 H 0.05 1.20 4.30 -51.93 -0.22 0.97 16 33 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16 36 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.14 1.59 6.89 -52.49 -0.36 1.23 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.39 2.07 9.06 45.56 0.41 2.48 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -30.59 322.21 -6.04 -36.63 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.09 Total: 4.80 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.02 Total: -20.32 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.29 Total: -37.14 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.25 Total: -5.18 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -3.87 Total: 18.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.59 -6.04 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840786759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.880 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds