Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 N 1.46498 * 109.47440 * 120.01052 * 2 1 3 5 5 C 1.46491 * 120.00678 * 124.52275 * 4 2 1 6 6 C 1.53009 * 109.46835 * 273.19518 * 5 4 2 7 7 O 1.42899 * 109.47194 * 66.18050 * 6 5 4 8 8 C 1.42902 * 113.99971 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46944 * 180.02562 * 8 7 6 10 10 H 1.07990 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99652 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00128 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47103 * 59.99337 * 13 11 9 15 15 H 1.48490 * 109.47370 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46889 * 299.99928 * 13 11 9 17 17 C 1.39675 * 119.99267 * 304.51508 * 4 2 1 18 18 C 1.38942 * 120.06526 * 354.07512 * 17 4 2 19 19 C 1.38092 * 119.97790 * 180.02562 * 18 17 4 20 20 C 1.38269 * 120.09782 * 0.02562 * 19 18 17 21 21 C 1.38505 * 120.12540 * 0.02562 * 20 19 18 22 22 F 1.35097 * 119.99116 * 180.02562 * 21 20 19 23 23 C 1.38344 * 120.02037 * 359.97438 * 21 20 19 24 24 H 1.08996 * 109.46761 * 305.30331 * 1 2 3 25 25 H 1.08997 * 109.47538 * 65.30441 * 1 2 3 26 26 H 1.09000 * 109.47066 * 185.30419 * 1 2 3 27 27 H 1.09007 * 109.46708 * 240.00301 * 2 1 3 28 28 H 1.08993 * 109.47306 * 188.16337 * 3 2 1 29 29 H 1.09000 * 109.47356 * 308.16878 * 3 2 1 30 30 H 1.09008 * 109.46817 * 68.16808 * 3 2 1 31 31 H 1.09000 * 109.47162 * 33.18938 * 5 4 2 32 32 H 1.09001 * 109.47954 * 153.19311 * 5 4 2 33 33 H 1.08999 * 109.46757 * 186.18075 * 6 5 4 34 34 H 1.08997 * 109.46882 * 306.17909 * 6 5 4 35 35 H 1.09006 * 109.46942 * 300.00311 * 8 7 6 36 36 H 1.09001 * 109.46468 * 59.99838 * 8 7 6 37 37 H 0.96995 * 119.99969 * 180.02562 * 12 11 9 38 38 H 1.07998 * 120.01293 * 0.02562 * 18 17 4 39 39 H 1.07996 * 119.95269 * 180.02562 * 19 18 17 40 40 H 1.07999 * 119.94184 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.05124 * 180.27940 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.9404 -1.8214 1.0638 6 6 2.1409 -3.1118 0.8721 7 8 1.4551 -3.0656 -0.3808 8 6 0.6746 -4.2297 -0.6594 9 6 -0.0001 -4.0736 -1.9978 10 1 0.1516 -3.1751 -2.5774 11 6 -0.8119 -5.0774 -2.4819 12 7 -0.9971 -6.1714 -1.7757 13 14 -1.6489 -4.8836 -4.1406 14 1 -0.6197 -4.7135 -5.1975 15 1 -2.4599 -6.0933 -4.4302 16 1 -2.5320 -3.6900 -4.1130 17 6 1.6049 -0.2712 2.4625 18 6 0.8306 0.8745 2.5978 19 6 0.4232 1.2880 3.8508 20 6 0.7853 0.5638 4.9716 21 6 1.5580 -0.5783 4.8417 22 9 1.9098 -1.2841 5.9386 23 6 1.9689 -0.9971 3.5888 24 1 -0.3633 0.5939 0.8387 25 1 -0.3634 0.4293 -0.9336 26 1 -0.3633 -1.0233 0.0950 27 1 1.8933 -0.5138 -0.8901 28 1 3.1201 1.4459 -0.1459 29 1 1.5624 1.9967 -0.8079 30 1 1.8008 1.9124 0.9540 31 1 3.5876 -1.6635 0.2011 32 1 3.5489 -1.9015 1.9646 33 1 2.8194 -3.9648 0.8836 34 1 1.4159 -3.2133 1.6796 35 1 1.3231 -5.1057 -0.6797 36 1 -0.0808 -4.3548 0.1164 37 1 -1.5679 -6.8777 -2.1164 38 1 0.5473 1.4414 1.7233 39 1 -0.1790 2.1783 3.9554 40 1 0.4657 0.8897 5.9504 41 1 2.5676 -1.8901 3.4865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852653825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = -54.910820 kcal Electronic energy + Delta-G solvation = -22463.927557 eV Core-core repulsion = 19065.844841 eV Total energy + Delta-G solvation = -3398.082716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.78586 -39.92584 -37.17815 -36.13804 -33.32680 -32.60278 -30.36236 -30.01610 -27.92979 -26.96641 -26.64697 -23.14315 -22.53592 -22.29880 -21.73047 -20.12690 -17.32364 -16.85038 -16.46086 -16.22545 -15.67535 -15.48866 -15.22955 -14.86782 -14.49986 -14.24649 -14.03119 -13.76489 -13.52246 -13.02617 -12.87662 -12.74725 -12.42678 -12.09115 -12.05158 -11.74979 -11.38526 -11.34426 -11.11326 -11.00061 -10.85208 -10.76237 -10.65918 -10.17111 -10.12712 -9.65636 -9.16076 -8.86753 -8.68084 -8.21475 -7.19660 -6.14069 -4.16337 1.32454 1.55952 3.15987 3.28558 3.32063 3.34981 3.79276 4.30302 4.42083 4.72839 4.85636 5.01861 5.14674 5.21371 5.22390 5.27775 5.31929 5.44316 5.51417 5.56509 5.63692 5.76166 5.86172 5.90189 5.90542 6.03256 6.04715 6.16660 6.20181 6.22665 6.32756 6.45589 6.50063 6.72887 6.92720 7.06659 7.38811 7.44224 7.62825 7.74698 8.11247 8.52500 8.95956 9.48625 10.97350 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.004313 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.659353 B = 6490.061272 C = 7024.740751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.154 3.846 3 C -0.181 4.181 4 N -0.603 5.603 5 C 0.123 3.877 6 C 0.041 3.959 7 O -0.389 6.389 8 C 0.198 3.802 9 C -0.514 4.514 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.907 3.093 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.259 3.741 18 C -0.222 4.222 19 C -0.048 4.048 20 C -0.225 4.225 21 C 0.143 3.857 22 F -0.145 7.145 23 C -0.243 4.243 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 14.867 9.216 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.051 3.949 3 C -0.239 4.239 4 N -0.310 5.310 5 C 0.000 4.000 6 C -0.038 4.038 7 O -0.309 6.309 8 C 0.124 3.876 9 C -0.552 4.552 10 H 0.083 0.917 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.734 3.266 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.153 3.847 18 C -0.244 4.244 19 C -0.067 4.067 20 C -0.246 4.246 21 C 0.123 3.877 22 F -0.123 7.123 23 C -0.266 4.266 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.988 14.736 8.895 18.224 hybrid contribution -0.487 -0.674 -0.414 0.929 sum 5.501 14.062 8.481 17.319 Atomic orbital electron populations 1.22420 0.94954 1.04183 1.01782 1.20959 0.94642 0.91744 0.87552 1.22536 1.01420 0.97068 1.02830 1.46813 1.48651 1.33175 1.02345 1.21623 0.91124 0.85076 1.02155 1.22763 0.95634 0.96113 0.89248 1.87824 1.64836 1.44052 1.34219 1.20159 0.89021 0.82262 0.96206 1.20963 1.27878 1.03615 1.02743 0.91702 1.24942 0.96460 0.94898 0.98111 1.69952 1.38488 1.07070 1.38170 0.86420 0.79392 0.77525 0.83280 1.20039 1.21151 1.20019 1.17521 0.90982 0.91318 0.84865 1.21309 1.05486 0.98913 0.98652 1.20705 0.96580 0.98113 0.91318 1.20773 1.06096 0.97743 1.00029 1.17370 0.96988 0.91161 0.82163 1.91467 1.90366 1.77978 1.52507 1.20561 1.10975 1.04557 0.90546 0.91840 0.92005 0.90641 0.88376 0.92693 0.91697 0.91120 0.90008 0.89911 0.93847 0.94204 0.97947 0.97947 0.92580 0.83605 0.85568 0.85731 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.91 37.16 0.33 -2.22 16 2 C 0.15 2.11 2.78 -67.93 -0.19 1.92 16 3 C -0.18 -1.94 9.02 37.16 0.34 -1.61 16 4 N -0.60 -8.51 2.52 -164.19 -0.41 -8.93 16 5 C 0.12 1.72 5.47 -4.04 -0.02 1.70 16 6 C 0.04 0.73 6.28 37.16 0.23 0.97 16 7 O -0.39 -8.78 9.53 -35.23 -0.34 -9.11 16 8 C 0.20 5.30 5.69 36.00 0.20 5.51 16 9 C -0.51 -14.71 9.43 -34.44 -0.32 -15.04 16 10 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 13 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.26 3.59 6.12 -83.80 -0.51 3.07 16 18 C -0.22 -2.73 6.81 -39.37 -0.27 -3.00 16 19 C -0.05 -0.54 10.04 -39.62 -0.40 -0.93 16 20 C -0.23 -2.72 10.02 -39.47 -0.40 -3.11 16 21 C 0.14 1.96 7.30 -39.44 -0.29 1.68 16 22 F -0.14 -2.04 17.27 2.25 0.04 -2.00 16 23 C -0.24 -3.40 9.14 -39.31 -0.36 -3.76 16 24 H 0.06 0.82 4.70 -51.93 -0.24 0.58 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.10 1.51 7.59 -51.92 -0.39 1.12 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.73 4.82 -51.92 -0.25 0.48 16 31 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 32 H 0.08 0.97 6.28 -51.93 -0.33 0.64 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.15 1.63 3.39 -52.49 -0.18 1.45 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.76 6.24 -52.49 -0.33 1.43 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -30.42 334.33 -7.62 -38.04 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.91 Total: -0.28 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.75 Total: -13.29 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.32 Total: -34.90 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.34 Total: -9.11 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.42 -7.62 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852653825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.873 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds