Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 N 1.46498 * 109.47440 * 120.01052 * 2 1 3 5 5 C 1.46491 * 120.00678 * 124.52275 * 4 2 1 6 6 C 1.53009 * 109.46835 * 273.19518 * 5 4 2 7 7 O 1.42899 * 109.47194 * 66.18050 * 6 5 4 8 8 C 1.42902 * 113.99971 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46944 * 180.02562 * 8 7 6 10 10 H 1.07990 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99652 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00128 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47103 * 59.99337 * 13 11 9 15 15 H 1.48490 * 109.47370 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46889 * 299.99928 * 13 11 9 17 17 C 1.39675 * 119.99267 * 304.51508 * 4 2 1 18 18 C 1.38942 * 120.06526 * 354.07512 * 17 4 2 19 19 C 1.38092 * 119.97790 * 180.02562 * 18 17 4 20 20 C 1.38269 * 120.09782 * 0.02562 * 19 18 17 21 21 C 1.38505 * 120.12540 * 0.02562 * 20 19 18 22 22 F 1.35097 * 119.99116 * 180.02562 * 21 20 19 23 23 C 1.38344 * 120.02037 * 359.97438 * 21 20 19 24 24 H 1.08996 * 109.46761 * 305.30331 * 1 2 3 25 25 H 1.08997 * 109.47538 * 65.30441 * 1 2 3 26 26 H 1.09000 * 109.47066 * 185.30419 * 1 2 3 27 27 H 1.09007 * 109.46708 * 240.00301 * 2 1 3 28 28 H 1.08993 * 109.47306 * 188.16337 * 3 2 1 29 29 H 1.09000 * 109.47356 * 308.16878 * 3 2 1 30 30 H 1.09008 * 109.46817 * 68.16808 * 3 2 1 31 31 H 1.09000 * 109.47162 * 33.18938 * 5 4 2 32 32 H 1.09001 * 109.47954 * 153.19311 * 5 4 2 33 33 H 1.08999 * 109.46757 * 186.18075 * 6 5 4 34 34 H 1.08997 * 109.46882 * 306.17909 * 6 5 4 35 35 H 1.09006 * 109.46942 * 300.00311 * 8 7 6 36 36 H 1.09001 * 109.46468 * 59.99838 * 8 7 6 37 37 H 0.96995 * 119.99969 * 180.02562 * 12 11 9 38 38 H 1.07998 * 120.01293 * 0.02562 * 18 17 4 39 39 H 1.07996 * 119.95269 * 180.02562 * 19 18 17 40 40 H 1.07999 * 119.94184 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.05124 * 180.27940 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.9404 -1.8214 1.0638 6 6 2.1409 -3.1118 0.8721 7 8 1.4551 -3.0656 -0.3808 8 6 0.6746 -4.2297 -0.6594 9 6 -0.0001 -4.0736 -1.9978 10 1 0.1516 -3.1751 -2.5774 11 6 -0.8119 -5.0774 -2.4819 12 7 -0.9971 -6.1714 -1.7757 13 14 -1.6489 -4.8836 -4.1406 14 1 -0.6197 -4.7135 -5.1975 15 1 -2.4599 -6.0933 -4.4302 16 1 -2.5320 -3.6900 -4.1130 17 6 1.6049 -0.2712 2.4625 18 6 0.8306 0.8745 2.5978 19 6 0.4232 1.2880 3.8508 20 6 0.7853 0.5638 4.9716 21 6 1.5580 -0.5783 4.8417 22 9 1.9098 -1.2841 5.9386 23 6 1.9689 -0.9971 3.5888 24 1 -0.3633 0.5939 0.8387 25 1 -0.3634 0.4293 -0.9336 26 1 -0.3633 -1.0233 0.0950 27 1 1.8933 -0.5138 -0.8901 28 1 3.1201 1.4459 -0.1459 29 1 1.5624 1.9967 -0.8079 30 1 1.8008 1.9124 0.9540 31 1 3.5876 -1.6635 0.2011 32 1 3.5489 -1.9015 1.9646 33 1 2.8194 -3.9648 0.8836 34 1 1.4159 -3.2133 1.6796 35 1 1.3231 -5.1057 -0.6797 36 1 -0.0808 -4.3548 0.1164 37 1 -1.5679 -6.8777 -2.1164 38 1 0.5473 1.4414 1.7233 39 1 -0.1790 2.1783 3.9554 40 1 0.4657 0.8897 5.9504 41 1 2.5676 -1.8901 3.4865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852653825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = -71.462112 kcal Electronic energy + Delta-G solvation = -22464.645274 eV Core-core repulsion = 19065.844841 eV Total energy + Delta-G solvation = -3398.800433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85254 -40.97570 -38.69258 -37.44210 -35.04219 -34.18902 -31.56577 -31.01362 -29.58313 -28.30142 -27.98019 -24.63189 -24.19199 -23.45892 -22.94406 -21.18717 -18.68550 -18.37527 -17.90255 -17.40887 -17.24332 -16.64066 -16.52456 -16.44928 -15.88157 -15.69790 -15.49232 -14.83701 -14.64764 -14.51009 -13.92875 -13.81764 -13.73316 -13.64203 -13.19884 -13.10352 -12.82592 -12.78759 -12.63352 -12.55113 -12.23822 -12.18566 -11.99277 -11.87544 -11.30811 -11.16295 -10.89271 -10.72424 -10.25135 -9.68693 -8.33499 -8.25412 -6.45608 0.32491 0.57351 1.38715 1.43215 1.51604 2.09103 2.32891 2.80122 3.01174 3.16226 3.40820 3.87812 3.93300 4.13574 4.17880 4.22956 4.25410 4.33345 4.37712 4.45240 4.53581 4.57693 4.65261 4.79040 4.79911 4.88542 4.93218 4.98636 5.01376 5.14745 5.18705 5.22498 5.34234 5.45760 5.50264 5.53000 5.55894 5.93813 5.95691 6.35265 6.48822 6.59628 6.79876 7.26373 8.79221 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.004313 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.659353 B = 6490.061272 C = 7024.740751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.153 3.847 3 C -0.169 4.169 4 N -0.611 5.611 5 C 0.132 3.868 6 C 0.035 3.965 7 O -0.392 6.392 8 C 0.214 3.786 9 C -0.541 4.541 10 H 0.065 0.935 11 C 0.006 3.994 12 N -0.933 5.933 13 Si 0.982 3.018 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.265 1.265 17 C 0.242 3.758 18 C -0.223 4.223 19 C -0.042 4.042 20 C -0.223 4.223 21 C 0.123 3.877 22 F -0.152 7.152 23 C -0.258 4.258 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.026 0.974 35 H -0.018 1.018 36 H -0.026 1.026 37 H 0.270 0.730 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 17.238 8.748 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.318 5.318 5 C 0.008 3.992 6 C -0.043 4.043 7 O -0.311 6.311 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.083 0.917 11 C -0.193 4.193 12 N -0.573 5.573 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.189 1.189 17 C 0.138 3.862 18 C -0.245 4.245 19 C -0.060 4.060 20 C -0.244 4.244 21 C 0.103 3.897 22 F -0.131 7.131 23 C -0.281 4.281 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.044 0.956 35 H -0.001 1.001 36 H -0.009 1.009 37 H 0.078 0.922 38 H 0.177 0.823 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.731 17.128 8.453 19.941 hybrid contribution -0.395 -1.404 -0.143 1.465 sum 5.336 15.724 8.311 18.568 Atomic orbital electron populations 1.22371 0.95837 1.01433 1.03114 1.20961 0.93902 0.93508 0.86650 1.22424 1.01690 0.94677 1.03852 1.46839 1.49031 1.33236 1.02709 1.21586 0.90684 0.83115 1.03769 1.23073 0.95404 0.99146 0.86682 1.87800 1.64632 1.42042 1.36663 1.19730 0.88294 0.82984 0.95097 1.21295 1.28910 1.04066 1.03550 0.91680 1.25969 0.96728 0.94173 1.02399 1.70079 1.39032 1.07922 1.40235 0.85256 0.78430 0.77980 0.77907 1.18803 1.20295 1.18925 1.17714 0.91839 0.92184 0.84506 1.21554 1.04798 0.98346 0.99812 1.21115 0.95873 0.98769 0.90286 1.21107 1.04951 0.96834 1.01492 1.17633 0.98041 0.92091 0.81903 1.91445 1.90575 1.78304 1.52733 1.20645 1.11615 1.04816 0.91061 0.90052 0.91003 0.95397 0.90575 0.92249 0.90181 0.90308 0.89047 0.87354 0.93092 0.95617 1.00056 1.00872 0.92157 0.82340 0.82018 0.83718 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 8.91 71.98 0.64 -4.25 16 2 C 0.15 4.09 2.78 44.99 0.13 4.22 16 3 C -0.17 -3.23 9.02 71.98 0.65 -2.58 16 4 N -0.61 -17.00 2.52 -673.39 -1.69 -18.70 16 5 C 0.13 3.66 5.47 86.38 0.47 4.14 16 6 C 0.04 1.31 6.28 71.99 0.45 1.76 16 7 O -0.39 -18.41 9.53 -148.98 -1.42 -19.83 16 8 C 0.21 12.06 5.69 71.24 0.41 12.46 16 9 C -0.54 -31.76 9.43 25.60 0.24 -31.52 16 10 H 0.06 3.73 7.81 -2.92 -0.02 3.70 16 11 C 0.01 0.32 5.46 84.65 0.46 0.79 16 12 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 13 Si 0.98 44.01 29.54 68.60 2.03 46.04 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 17 C 0.24 6.50 6.12 38.21 0.23 6.73 16 18 C -0.22 -5.00 6.81 22.40 0.15 -4.84 16 19 C -0.04 -0.80 10.04 22.24 0.22 -0.58 16 20 C -0.22 -4.87 10.02 22.34 0.22 -4.65 16 21 C 0.12 3.29 7.30 22.36 0.16 3.45 16 22 F -0.15 -4.26 17.27 44.97 0.78 -3.48 16 23 C -0.26 -7.16 9.14 22.44 0.21 -6.95 16 24 H 0.08 1.99 4.70 -2.39 -0.01 1.98 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 2.36 7.59 -2.38 -0.02 2.34 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.08 1.39 4.82 -2.38 -0.01 1.38 16 31 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 32 H 0.11 2.47 6.28 -2.39 -0.01 2.45 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 36 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.16 3.07 3.39 -2.91 -0.01 3.06 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.13 3.49 6.24 -2.91 -0.02 3.47 16 Total: -1.00 -67.42 334.33 5.65 -61.77 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.02 Total: 12.35 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.65 Total: -21.83 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.41 Total: -75.01 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -1.42 Total: -19.83 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.42 5.65 -61.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852653825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.692 kcal (2) G-P(sol) polarization free energy of solvation -67.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds