Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 C 1.53004 * 109.46786 * 302.28333 * 3 2 1 5 5 C 1.52991 * 109.47261 * 295.06750 * 4 3 2 6 6 C 1.53001 * 109.47189 * 62.28509 * 3 2 1 7 7 N 1.46499 * 109.47447 * 65.00179 * 6 3 2 8 8 C 1.46502 * 119.99842 * 270.00536 * 7 6 3 9 9 C 1.50700 * 109.46743 * 269.99522 * 8 7 6 10 10 H 1.08003 * 119.99978 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00060 * 180.02562 * 9 8 7 12 12 N 1.31524 * 120.00148 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46917 * 90.00104 * 13 11 9 15 15 H 1.48507 * 109.47105 * 209.99892 * 13 11 9 16 16 H 1.48492 * 109.47198 * 329.99754 * 13 11 9 17 17 C 1.38568 * 120.00003 * 89.99768 * 7 6 3 18 18 C 1.39468 * 120.51412 * 5.00335 * 17 7 6 19 19 C 1.38468 * 118.31091 * 179.97438 * 18 17 7 20 20 F 1.35101 * 120.43038 * 179.97438 * 19 18 17 21 21 N 1.32794 * 119.13872 * 0.02562 * 19 18 17 22 22 C 1.31759 * 120.96415 * 359.97438 * 21 19 18 23 23 N 1.31768 * 121.85802 * 0.02562 * 22 21 19 24 24 H 1.08996 * 109.46925 * 186.20859 * 1 2 3 25 25 H 1.09005 * 109.46866 * 306.20664 * 1 2 3 26 26 H 1.08993 * 109.46854 * 66.20686 * 1 2 3 27 27 H 1.08998 * 109.47388 * 239.99567 * 2 1 3 28 28 H 1.09004 * 109.47457 * 119.99423 * 2 1 3 29 29 H 1.09004 * 109.47369 * 182.28705 * 3 2 1 30 30 H 1.09001 * 109.47198 * 55.06788 * 4 3 2 31 31 H 1.09005 * 109.46713 * 175.06748 * 4 3 2 32 32 H 1.09003 * 109.47536 * 185.40015 * 5 4 3 33 33 H 1.09005 * 109.46995 * 305.39382 * 5 4 3 34 34 H 1.08999 * 109.47748 * 65.39485 * 5 4 3 35 35 H 1.09003 * 109.46721 * 305.00081 * 6 3 2 36 36 H 1.09004 * 109.46980 * 185.00293 * 6 3 2 37 37 H 1.08996 * 109.47358 * 29.99096 * 8 7 6 38 38 H 1.08996 * 109.46884 * 149.99907 * 8 7 6 39 39 H 0.96995 * 120.00109 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.84494 * 0.24677 * 18 17 7 41 41 H 1.07994 * 119.06992 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4836 2.1801 -1.2196 5 6 2.0449 1.5508 -2.4961 6 6 1.5775 2.1470 1.2770 7 7 2.2059 1.5138 2.4391 8 6 1.5433 0.3927 3.1100 9 6 0.6450 0.9193 4.1994 10 1 0.5751 1.9827 4.3747 11 6 -0.0868 0.0435 4.9729 12 7 -0.8704 0.5031 5.9241 13 14 0.0346 -1.7957 4.6702 14 1 1.1264 -2.3632 5.5016 15 1 -1.2516 -2.4432 5.0331 16 1 0.3256 -2.0430 3.2352 17 6 3.4272 1.9753 2.9035 18 6 4.0180 3.1058 2.3395 19 6 5.2387 3.5272 2.8392 20 9 5.8495 4.6167 2.3242 21 7 5.8017 2.8460 3.8303 22 6 5.2156 1.7817 4.3400 23 7 4.0543 1.3468 3.8943 24 1 -0.3633 -1.0216 0.1111 25 1 -0.3633 0.6071 0.8293 26 1 -0.3633 0.4146 -0.9403 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.1293 1.4429 -0.0410 30 1 0.3962 2.1045 -1.2250 31 1 1.7747 3.2296 -1.1734 32 1 1.7257 2.1344 -3.3597 33 1 3.1338 1.5400 -2.4474 34 1 1.6752 0.5298 -2.5909 35 1 0.4937 2.0692 1.3626 36 1 1.8643 3.1979 1.2364 37 1 0.9483 -0.1638 2.3859 38 1 2.2949 -0.2657 3.5454 39 1 -1.3855 -0.1130 6.4680 40 1 3.5336 3.6415 1.5366 41 1 5.7006 1.2509 5.1458 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853457377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = 2.074283 kcal Electronic energy + Delta-G solvation = -22897.977505 eV Core-core repulsion = 19534.658600 eV Total energy + Delta-G solvation = -3363.318905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.86372 -40.46261 -38.39248 -35.58796 -32.83894 -32.33928 -31.35783 -30.63015 -29.17359 -26.96951 -24.76103 -23.79190 -23.56691 -22.71677 -20.88367 -19.04775 -17.81994 -17.56181 -17.06954 -15.93289 -15.88974 -15.62337 -15.11541 -14.92122 -14.62442 -14.18738 -14.01585 -13.67806 -13.54764 -13.18140 -12.92836 -12.79768 -12.41952 -11.99897 -11.91796 -11.59169 -11.50343 -11.31609 -11.00005 -10.75995 -10.59214 -10.43527 -10.34408 -10.25654 -10.11465 -9.96124 -9.55523 -9.35143 -8.89926 -8.65291 -7.32533 -6.16185 -4.15617 1.28973 1.69820 3.21391 3.26303 3.29393 3.36193 3.78239 4.20111 4.31761 4.59912 4.81211 4.86723 4.96377 5.06766 5.17081 5.26346 5.36301 5.41182 5.48540 5.53728 5.64382 5.68406 5.78711 5.84312 5.91504 5.92284 5.93740 6.09964 6.19658 6.26740 6.36371 6.38220 6.54463 6.61679 6.75906 6.89223 7.14075 7.50617 7.69457 7.84406 8.40549 8.63414 8.87156 9.43043 10.97042 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.007953 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.897166 B = 3519.935748 C = 5485.210952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.120 4.120 5 C -0.150 4.150 6 C 0.120 3.880 7 N -0.556 5.556 8 C 0.214 3.786 9 C -0.530 4.530 10 H 0.073 0.927 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.872 3.128 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.472 3.528 18 C -0.333 4.333 19 C 0.373 3.627 20 F -0.114 7.114 21 N -0.611 5.611 22 C 0.369 3.631 23 N -0.564 5.564 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.265 0.735 40 H 0.146 0.854 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 1.416 -13.348 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.004 4.004 7 N -0.260 5.260 8 C 0.094 3.906 9 C -0.568 4.568 10 H 0.091 0.909 11 C -0.127 4.127 12 N -0.534 5.534 13 Si 0.699 3.301 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.190 1.190 17 C 0.227 3.773 18 C -0.364 4.364 19 C 0.215 3.785 20 F -0.093 7.093 21 N -0.339 5.339 22 C 0.079 3.921 23 N -0.288 5.288 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.164 0.836 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.228 0.834 -12.615 14.093 hybrid contribution -0.296 -0.225 -0.628 0.730 sum 5.933 0.608 -13.243 14.524 Atomic orbital electron populations 1.21933 0.95776 1.01960 1.01934 1.21623 0.96399 0.95943 1.02035 1.21673 1.00411 0.96064 0.94355 1.21555 1.01174 0.99137 0.93897 1.21769 1.00871 1.00928 0.97141 1.21720 0.99295 0.96020 0.83368 1.46846 1.15638 1.34659 1.28897 1.19972 0.93100 0.84451 0.93049 1.21293 1.24332 0.95732 1.15467 0.90901 1.24810 0.94748 0.98567 0.94564 1.69893 1.27851 1.35101 1.20523 0.86919 0.77883 0.86027 0.79306 1.19799 1.21107 1.18968 1.18302 0.86034 0.86371 0.86587 1.21719 0.99642 1.03817 1.11237 1.17938 0.87784 0.83215 0.89546 1.91593 1.83157 1.50261 1.84263 1.67774 1.38990 1.12471 1.14680 1.24456 0.86333 0.87010 0.94288 1.68120 1.11077 1.34540 1.15086 0.93084 0.91288 0.92890 0.92435 0.91122 0.91290 0.91203 0.92108 0.93069 0.92967 0.92565 0.88762 0.91057 0.94061 0.93891 0.92501 0.83620 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.45 37.16 0.31 -1.79 16 2 C -0.12 -1.64 4.86 -26.73 -0.13 -1.77 16 3 C -0.11 -1.33 2.37 -90.62 -0.21 -1.54 16 4 C -0.12 -1.22 5.14 -26.73 -0.14 -1.36 16 5 C -0.15 -1.38 9.53 37.15 0.35 -1.03 16 6 C 0.12 1.80 4.60 -4.04 -0.02 1.78 16 7 N -0.56 -10.51 2.38 -175.06 -0.42 -10.93 16 8 C 0.21 4.74 3.36 -5.19 -0.02 4.72 16 9 C -0.53 -14.19 9.94 -34.44 -0.34 -14.53 16 10 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 13 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 17 C 0.47 8.97 7.39 -154.77 -1.14 7.82 16 18 C -0.33 -5.52 9.32 -39.04 -0.36 -5.88 16 19 C 0.37 6.31 8.50 -17.05 -0.14 6.16 16 20 F -0.11 -1.79 17.30 2.25 0.04 -1.75 16 21 N -0.61 -10.64 10.45 -14.98 -0.16 -10.80 16 22 C 0.37 6.25 12.28 -92.21 -1.13 5.12 16 23 N -0.56 -11.14 9.23 -13.84 -0.13 -11.27 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.04 5.62 -51.93 -0.29 0.75 16 26 H 0.05 0.59 6.64 -51.93 -0.34 0.25 16 27 H 0.06 0.69 6.80 -51.93 -0.35 0.33 16 28 H 0.07 1.13 5.69 -51.93 -0.30 0.83 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.70 6.26 -51.93 -0.33 0.38 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.52 6.89 -51.93 -0.36 0.16 16 35 H 0.09 1.49 6.05 -51.93 -0.31 1.18 16 36 H 0.07 0.97 6.04 -51.93 -0.31 0.66 16 37 H 0.04 0.88 3.93 -51.93 -0.20 0.67 16 38 H 0.04 1.01 6.76 -51.93 -0.35 0.66 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.15 2.06 6.15 -52.49 -0.32 1.74 16 41 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -30.02 324.71 -8.34 -38.36 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.60 Total: 1.84 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.07 Total: -0.31 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.07 Total: -58.81 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.02 -8.34 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853457377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.431 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds