Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47270 * 2 1 4 4 C 1.52998 * 109.46866 * 303.24465 * 3 2 1 5 5 C 1.53006 * 109.46932 * 295.23924 * 4 3 2 6 6 C 1.53001 * 109.47087 * 63.24005 * 3 2 1 7 7 N 1.46503 * 109.46881 * 70.35319 * 6 3 2 8 8 C 1.46499 * 120.00062 * 262.59001 * 7 6 3 9 9 C 1.50698 * 109.47369 * 99.42436 * 8 7 6 10 10 H 1.08003 * 120.00115 * 3.55966 * 9 8 7 11 11 C 1.37874 * 120.00116 * 183.55987 * 9 8 7 12 12 N 1.31512 * 120.00286 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47180 * 59.99923 * 13 11 9 15 15 H 1.48496 * 109.47449 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47245 * 300.00107 * 13 11 9 17 17 C 1.39162 * 119.99876 * 82.58522 * 7 6 3 18 18 C 1.39206 * 120.05914 * 4.73076 * 17 7 6 19 19 N 1.32007 * 119.92861 * 179.70869 * 18 17 7 20 20 C 1.32402 * 120.05484 * 0.55876 * 19 18 17 21 21 F 1.35103 * 119.93920 * 179.73723 * 20 19 18 22 22 C 1.38472 * 120.12199 * 359.71621 * 20 19 18 23 23 N 1.32206 * 120.07159 * 359.97438 * 22 20 19 24 24 H 1.08993 * 109.47312 * 185.01887 * 1 2 3 25 25 H 1.09006 * 109.47193 * 305.02663 * 1 2 3 26 26 H 1.09000 * 109.46830 * 65.02315 * 1 2 3 27 27 H 1.08996 * 109.47182 * 239.99838 * 2 1 3 28 28 H 1.09000 * 109.47356 * 119.99660 * 2 1 3 29 29 H 1.08998 * 109.46887 * 183.24563 * 3 2 1 30 30 H 1.08998 * 109.47133 * 55.23440 * 4 3 2 31 31 H 1.08999 * 109.47353 * 175.23902 * 4 3 2 32 32 H 1.08991 * 109.47383 * 65.23248 * 5 4 3 33 33 H 1.09004 * 109.46972 * 185.23207 * 5 4 3 34 34 H 1.08994 * 109.47210 * 305.22668 * 5 4 3 35 35 H 1.08999 * 109.47022 * 190.35185 * 6 3 2 36 36 H 1.08993 * 109.47237 * 310.35891 * 6 3 2 37 37 H 1.09002 * 109.47002 * 219.42307 * 8 7 6 38 38 H 1.08998 * 109.47117 * 339.42229 * 8 7 6 39 39 H 0.96998 * 120.00833 * 180.02562 * 12 11 9 40 40 H 1.07994 * 120.03531 * 359.97438 * 18 17 7 41 41 H 1.08001 * 119.96464 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4645 2.1870 -1.2064 5 6 2.0022 1.5620 -2.4953 6 6 1.5977 2.1399 1.2880 7 7 2.3400 1.5857 2.4230 8 6 1.7354 0.5415 3.2540 9 6 2.2660 -0.8049 2.8338 10 1 3.0244 -0.8714 2.0677 11 6 1.7834 -1.9519 3.4273 12 7 0.8602 -1.8711 4.3605 13 14 2.4416 -3.6209 2.9070 14 1 3.9043 -3.6759 3.1569 15 1 1.7657 -4.6859 3.6906 16 1 2.1785 -3.8276 1.4602 17 6 3.6193 2.0510 2.7117 18 6 4.1564 3.1102 1.9854 19 7 5.3680 3.5533 2.2652 20 6 6.0762 2.9841 3.2282 21 9 7.3181 3.4360 3.5091 22 6 5.5463 1.9267 3.9483 23 7 4.3311 1.4829 3.6763 24 1 -0.3633 -1.0236 0.0899 25 1 -0.3634 0.5899 0.8416 26 1 -0.3633 0.4339 -0.9316 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1285 1.4431 -0.0582 30 1 0.3770 2.1139 -1.1934 31 1 1.7588 3.2355 -1.1607 32 1 1.6308 0.5414 -2.5867 33 1 1.6671 2.1485 -3.3508 34 1 3.0917 1.5510 -2.4668 35 1 1.7980 3.2085 1.2098 36 1 0.5302 1.9804 1.4394 37 1 1.9847 0.7200 4.3000 38 1 0.6527 0.5601 3.1302 39 1 0.5209 -2.6779 4.7784 40 1 3.5809 3.5716 1.1967 41 1 6.1264 1.4640 4.7330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853458584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = 4.189323 kcal Electronic energy + Delta-G solvation = -23047.134663 eV Core-core repulsion = 19683.907473 eV Total energy + Delta-G solvation = -3363.227190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.48374 -40.53021 -38.08998 -35.29677 -33.56684 -32.83981 -30.85057 -29.63377 -28.84190 -26.43667 -24.56870 -24.15796 -23.12471 -22.96090 -20.95785 -18.73223 -17.72103 -17.57644 -16.82831 -16.47833 -15.73340 -15.37078 -14.86688 -14.73581 -14.32109 -13.90594 -13.72288 -13.47445 -13.28739 -12.96048 -12.59448 -12.55155 -12.25618 -11.74033 -11.55816 -11.42360 -11.39563 -11.09128 -11.02451 -10.89612 -10.80352 -10.61940 -10.30776 -10.21602 -10.05412 -9.93793 -9.31756 -9.14081 -8.63484 -8.49966 -6.99013 -6.11975 -4.14920 1.26865 1.63531 3.25567 3.30615 3.33127 3.46565 3.97808 4.13158 4.35520 4.71773 4.82040 5.04602 5.10717 5.16692 5.24869 5.33324 5.43043 5.56360 5.63757 5.74722 5.79538 5.86694 5.93434 5.98749 6.06670 6.11272 6.18947 6.32677 6.45414 6.55951 6.66696 6.74603 6.83193 6.94413 7.26483 7.42325 7.51765 7.65263 7.82972 8.01626 8.12202 8.43143 8.83764 9.45626 10.93423 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.007810 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.585647 B = 3584.105065 C = 5303.415147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.157 4.157 3 C -0.101 4.101 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.568 5.568 8 C 0.254 3.746 9 C -0.512 4.512 10 H 0.063 0.937 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.889 3.111 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.366 3.634 18 C 0.000 4.000 19 N -0.435 5.435 20 C 0.145 3.855 21 F -0.123 7.123 22 C 0.103 3.897 23 N -0.453 5.453 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.166 0.834 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 7.496 -7.242 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.194 4.194 3 C -0.121 4.121 4 C -0.159 4.159 5 C -0.206 4.206 6 C 0.000 4.000 7 N -0.274 5.274 8 C 0.135 3.865 9 C -0.550 4.550 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.126 3.874 18 C -0.171 4.171 19 N -0.153 5.153 20 C -0.013 4.013 21 F -0.103 7.103 22 C -0.063 4.063 23 N -0.174 5.174 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.183 0.817 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.928 7.289 -7.113 10.226 hybrid contribution 0.645 -0.957 -0.290 1.190 sum 1.573 6.331 -7.403 9.867 Atomic orbital electron populations 1.21718 0.96792 1.01251 0.99978 1.22254 0.95863 0.95722 1.05532 1.21607 1.00172 0.96903 0.93372 1.21593 1.00986 0.98751 0.94530 1.21755 1.00924 1.01012 0.96952 1.21727 0.97053 0.96091 0.85175 1.47307 1.10752 1.39625 1.29751 1.19389 0.93044 0.83895 0.90156 1.21193 1.22301 0.90470 1.21040 0.91906 1.24860 0.94937 0.98968 0.94895 1.69895 1.28349 1.29149 1.25566 0.86696 0.79360 0.83625 0.78664 1.20177 1.21241 1.20157 1.19439 0.87949 0.89610 0.90442 1.22781 0.92168 0.98260 1.03889 1.67392 1.06463 1.27699 1.13726 1.18700 0.84002 0.98820 0.99799 1.91538 1.37290 1.89131 1.92320 1.23336 0.92252 0.92503 0.98223 1.68361 1.05026 1.27109 1.16898 0.93351 0.92726 0.94297 0.93755 0.85238 0.91650 0.91515 0.92612 0.92479 0.93398 0.93040 0.91966 0.89309 0.94476 0.94400 0.92616 0.81710 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.17 37.16 0.34 -1.84 16 2 C -0.16 -2.63 5.24 -26.73 -0.14 -2.77 16 3 C -0.10 -1.45 2.27 -90.62 -0.21 -1.66 16 4 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 5 C -0.15 -1.68 9.53 37.16 0.35 -1.32 16 6 C 0.12 1.83 4.46 -4.04 -0.02 1.82 16 7 N -0.57 -10.65 2.47 -175.06 -0.43 -11.09 16 8 C 0.25 5.80 4.91 -5.19 -0.03 5.77 16 9 C -0.51 -12.66 6.66 -34.44 -0.23 -12.89 16 10 H 0.06 1.60 6.67 -52.48 -0.35 1.25 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 13 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 C 0.37 6.91 7.19 -154.62 -1.11 5.80 16 18 C 0.00 0.00 10.09 -17.12 -0.17 -0.17 16 19 N -0.43 -7.70 10.50 -13.24 -0.14 -7.84 16 20 C 0.14 2.50 8.43 -17.22 -0.15 2.35 16 21 F -0.12 -2.02 17.29 2.25 0.04 -1.98 16 22 C 0.10 1.76 11.20 -17.30 -0.19 1.57 16 23 N -0.45 -9.12 9.44 -12.16 -0.11 -9.24 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.86 6.09 -51.93 -0.32 0.55 16 26 H 0.04 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.04 0.71 6.84 -51.93 -0.36 0.36 16 28 H 0.13 2.67 3.11 -51.93 -0.16 2.51 16 29 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 30 H 0.07 0.75 6.22 -51.93 -0.32 0.43 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.78 6.37 -51.93 -0.33 0.45 16 36 H 0.09 1.31 5.58 -51.93 -0.29 1.02 16 37 H 0.04 0.96 7.79 -51.93 -0.40 0.55 16 38 H 0.04 0.90 7.73 -51.93 -0.40 0.50 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.17 2.30 6.20 -52.49 -0.33 1.97 16 41 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -27.31 326.30 -7.40 -34.72 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.61 Total: 1.82 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.78 Total: -3.26 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.05 Total: -51.74 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.31 -7.40 -34.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853458584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.907 kcal (2) G-P(sol) polarization free energy of solvation -27.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds