Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46993 * 2 1 4 4 N 1.46903 * 109.46706 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99775 * 164.40151 * 4 3 2 6 6 C 1.52997 * 109.47030 * 195.73146 * 5 4 3 7 7 O 1.42903 * 109.47063 * 64.78529 * 6 5 4 8 8 C 1.42906 * 113.99968 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47234 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00019 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00228 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99977 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47019 * 60.00403 * 13 11 9 15 15 H 1.48507 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47361 * 300.00163 * 13 11 9 17 17 C 1.39845 * 110.99519 * 288.34416 * 4 3 2 18 18 C 1.38827 * 120.08606 * 300.00288 * 17 4 3 19 19 C 1.38151 * 119.95035 * 180.02562 * 18 17 4 20 20 C 1.38272 * 120.11238 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.16213 * 0.02562 * 20 19 18 22 22 C 1.38279 * 120.05087 * 359.68263 * 21 20 19 23 23 F 1.35093 * 120.06190 * 180.31860 * 22 21 20 24 24 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47159 * 300.00438 * 1 2 3 26 26 H 1.08999 * 109.47189 * 60.00315 * 1 2 3 27 27 H 1.08992 * 109.47221 * 239.99309 * 2 1 3 28 28 H 1.08998 * 109.46738 * 119.99399 * 2 1 3 29 29 H 1.08998 * 109.46888 * 299.99307 * 3 2 1 30 30 H 1.08990 * 109.47195 * 59.99646 * 3 2 1 31 31 H 1.09000 * 109.46772 * 315.72637 * 5 4 3 32 32 H 1.08997 * 109.47279 * 75.72821 * 5 4 3 33 33 H 1.08998 * 109.47691 * 184.78443 * 6 5 4 34 34 H 1.08999 * 109.47355 * 304.78697 * 6 5 4 35 35 H 1.09004 * 109.46956 * 299.99909 * 8 7 6 36 36 H 1.08997 * 109.47448 * 59.99422 * 8 7 6 37 37 H 0.96994 * 119.99947 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.02398 * 359.97438 * 18 17 4 39 39 H 1.08001 * 119.94231 * 179.97438 * 19 18 17 40 40 H 1.07999 * 119.91624 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.97953 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0353 2.7635 -0.3694 6 6 5.5141 2.6377 -0.7410 7 8 5.6435 1.8331 -1.9149 8 6 6.9928 1.6514 -2.3492 9 6 7.0107 0.7918 -3.5869 10 1 6.0844 0.4210 -4.0003 11 6 8.2096 0.4788 -4.1915 12 7 9.3377 0.9300 -3.6879 13 14 8.2319 -0.5872 -5.7253 14 1 7.4504 0.0755 -6.8001 15 1 9.6341 -0.7760 -6.1767 16 1 7.6291 -1.9092 -5.4182 17 6 4.0106 1.0314 1.2384 18 6 3.6996 1.7464 2.3870 19 6 4.1971 1.3381 3.6094 20 6 5.0046 0.2186 3.6909 21 6 5.3181 -0.4964 2.5496 22 6 4.8190 -0.0972 1.3234 23 9 5.1199 -0.7994 0.2092 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.4782 3.1513 -1.2222 32 1 3.9294 3.4453 0.4743 33 1 5.9264 3.6284 -0.9323 34 1 6.0569 2.1709 0.0810 35 1 7.4360 2.6216 -2.5738 36 1 7.5659 1.1640 -1.5605 37 1 10.1811 0.7094 -4.1130 38 1 3.0701 2.6217 2.3248 39 1 3.9555 1.8947 4.5029 40 1 5.3914 -0.0980 4.6482 41 1 5.9495 -1.3702 2.6165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859519559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -65.036000 kcal Electronic energy + Delta-G solvation = -22560.213747 eV Core-core repulsion = 19161.691971 eV Total energy + Delta-G solvation = -3398.521776 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.31294 -39.84409 -37.21704 -36.14213 -33.45322 -32.55749 -30.57274 -30.08779 -28.64871 -26.75992 -25.03711 -23.35745 -22.30528 -22.16512 -21.07957 -20.47982 -17.61427 -16.44999 -16.32630 -16.09544 -15.98529 -15.34917 -14.98540 -14.77414 -14.52184 -14.27002 -14.00614 -13.79586 -13.64704 -13.11456 -12.80742 -12.39237 -12.29525 -12.11524 -11.95474 -11.90107 -11.57841 -11.25182 -11.14446 -10.94831 -10.76267 -10.66734 -10.62608 -10.35483 -9.93325 -8.99649 -8.94138 -8.69860 -8.46048 -8.30023 -8.02699 -6.00622 -4.00916 1.14783 1.24851 3.39297 3.41058 3.45883 3.57707 3.76612 4.43699 4.49335 4.78360 4.82080 4.87541 4.99807 5.03840 5.19311 5.29549 5.32680 5.35782 5.37752 5.53337 5.56235 5.64755 5.72148 5.76886 5.98373 5.99779 6.08139 6.10803 6.15023 6.20906 6.27080 6.33235 6.34986 6.38667 6.79097 7.08525 7.22256 7.49190 7.55707 7.90951 8.28035 8.73009 9.13264 9.63230 11.11207 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.004831 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.162648 B = 5794.440264 C = 6320.903801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.062 3.938 4 N -0.490 5.490 5 C 0.066 3.934 6 C 0.069 3.931 7 O -0.377 6.377 8 C 0.197 3.803 9 C -0.507 4.507 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.902 5.902 13 Si 0.906 3.094 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.063 3.937 18 C -0.126 4.126 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.158 4.158 22 C 0.134 3.866 23 F -0.113 7.113 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 1.444 15.632 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.064 4.064 4 N -0.210 5.210 5 C -0.060 4.060 6 C -0.010 4.010 7 O -0.296 6.296 8 C 0.122 3.878 9 C -0.545 4.545 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.541 5.541 13 Si 0.734 3.266 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.032 4.032 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.177 4.177 22 C 0.114 3.886 23 F -0.091 7.091 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.022 1.011 15.055 20.598 hybrid contribution 0.332 0.073 -0.201 0.394 sum -13.691 1.083 14.854 20.230 Atomic orbital electron populations 1.21715 0.95751 1.01635 1.01457 1.21488 0.94955 0.96409 1.03047 1.22253 0.85599 0.97702 1.00823 1.59439 1.07527 1.28717 1.25364 1.22278 0.96709 0.87330 0.99649 1.22163 0.93864 0.94644 0.90290 1.87944 1.30496 1.70099 1.41051 1.20137 0.77806 0.95328 0.94502 1.21013 0.93252 1.30640 1.09594 0.91621 1.24931 0.95126 0.96458 0.98022 1.69962 0.97643 1.45782 1.40738 0.86422 0.76798 0.80805 0.82595 1.20081 1.21257 1.20025 1.18857 0.99078 0.95351 0.89885 1.21496 1.00569 0.99938 0.92636 1.20983 0.99028 0.97555 0.97354 1.20960 0.97694 0.95049 0.97852 1.21196 1.02698 1.02464 0.91341 1.17746 0.96679 0.91124 0.83078 1.91621 1.90792 1.76525 1.50131 0.92639 0.93172 0.92630 0.90590 0.92454 0.90225 0.94727 0.89520 0.93738 0.94217 0.95038 0.98186 0.98048 0.92775 0.85709 0.85788 0.85321 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.51 5.99 -26.73 -0.16 -1.67 16 3 C 0.06 0.79 4.88 -3.82 -0.02 0.77 16 4 N -0.49 -7.80 4.21 -171.03 -0.72 -8.52 16 5 C 0.07 1.04 5.28 -3.82 -0.02 1.02 16 6 C 0.07 1.37 6.08 37.16 0.23 1.59 16 7 O -0.38 -9.63 10.27 -35.23 -0.36 -9.99 16 8 C 0.20 5.69 5.69 36.00 0.20 5.90 16 9 C -0.51 -15.59 9.43 -34.44 -0.32 -15.92 16 10 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.90 13.29 55.43 0.74 -27.17 16 13 Si 0.91 22.68 29.54 -169.99 -5.02 17.66 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.06 0.95 2.97 -83.67 -0.25 0.71 16 18 C -0.13 -1.50 8.28 -39.40 -0.33 -1.83 16 19 C -0.13 -1.34 10.04 -39.60 -0.40 -1.74 16 20 C -0.10 -1.04 10.04 -39.55 -0.40 -1.43 16 21 C -0.16 -2.09 10.02 -39.55 -0.40 -2.49 16 22 C 0.13 2.22 7.24 -39.25 -0.28 1.94 16 23 F -0.11 -2.31 17.08 2.25 0.04 -2.27 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.75 7.58 -51.93 -0.39 0.36 16 29 H 0.08 0.97 7.74 -51.93 -0.40 0.56 16 30 H 0.03 0.38 6.79 -51.93 -0.35 0.02 16 31 H 0.09 1.30 7.74 -51.93 -0.40 0.90 16 32 H 0.04 0.57 7.04 -51.93 -0.37 0.21 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.65 7.40 -51.93 -0.38 0.26 16 35 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.13 1.25 7.04 -52.49 -0.37 0.89 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -33.86 345.61 -8.43 -42.30 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -6.44 Total: -4.55 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.87 Total: -12.66 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.02 Total: -35.69 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.36 Total: -9.99 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.86 -8.43 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859519559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.739 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds