Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46993 * 2 1 4 4 N 1.46903 * 109.46706 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99775 * 164.40151 * 4 3 2 6 6 C 1.52997 * 109.47030 * 195.73146 * 5 4 3 7 7 O 1.42903 * 109.47063 * 64.78529 * 6 5 4 8 8 C 1.42906 * 113.99968 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47234 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00019 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00228 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99977 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47019 * 60.00403 * 13 11 9 15 15 H 1.48507 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47361 * 300.00163 * 13 11 9 17 17 C 1.39845 * 110.99519 * 288.34416 * 4 3 2 18 18 C 1.38827 * 120.08606 * 300.00288 * 17 4 3 19 19 C 1.38151 * 119.95035 * 180.02562 * 18 17 4 20 20 C 1.38272 * 120.11238 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.16213 * 0.02562 * 20 19 18 22 22 C 1.38279 * 120.05087 * 359.68263 * 21 20 19 23 23 F 1.35093 * 120.06190 * 180.31860 * 22 21 20 24 24 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47159 * 300.00438 * 1 2 3 26 26 H 1.08999 * 109.47189 * 60.00315 * 1 2 3 27 27 H 1.08992 * 109.47221 * 239.99309 * 2 1 3 28 28 H 1.08998 * 109.46738 * 119.99399 * 2 1 3 29 29 H 1.08998 * 109.46888 * 299.99307 * 3 2 1 30 30 H 1.08990 * 109.47195 * 59.99646 * 3 2 1 31 31 H 1.09000 * 109.46772 * 315.72637 * 5 4 3 32 32 H 1.08997 * 109.47279 * 75.72821 * 5 4 3 33 33 H 1.08998 * 109.47691 * 184.78443 * 6 5 4 34 34 H 1.08999 * 109.47355 * 304.78697 * 6 5 4 35 35 H 1.09004 * 109.46956 * 299.99909 * 8 7 6 36 36 H 1.08997 * 109.47448 * 59.99422 * 8 7 6 37 37 H 0.96994 * 119.99947 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.02398 * 359.97438 * 18 17 4 39 39 H 1.08001 * 119.94231 * 179.97438 * 19 18 17 40 40 H 1.07999 * 119.91624 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.97953 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0353 2.7635 -0.3694 6 6 5.5141 2.6377 -0.7410 7 8 5.6435 1.8331 -1.9149 8 6 6.9928 1.6514 -2.3492 9 6 7.0107 0.7918 -3.5869 10 1 6.0844 0.4210 -4.0003 11 6 8.2096 0.4788 -4.1915 12 7 9.3377 0.9300 -3.6879 13 14 8.2319 -0.5872 -5.7253 14 1 7.4504 0.0755 -6.8001 15 1 9.6341 -0.7760 -6.1767 16 1 7.6291 -1.9092 -5.4182 17 6 4.0106 1.0314 1.2384 18 6 3.6996 1.7464 2.3870 19 6 4.1971 1.3381 3.6094 20 6 5.0046 0.2186 3.6909 21 6 5.3181 -0.4964 2.5496 22 6 4.8190 -0.0972 1.3234 23 9 5.1199 -0.7994 0.2092 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.4782 3.1513 -1.2222 32 1 3.9294 3.4453 0.4743 33 1 5.9264 3.6284 -0.9323 34 1 6.0569 2.1709 0.0810 35 1 7.4360 2.6216 -2.5738 36 1 7.5659 1.1640 -1.5605 37 1 10.1811 0.7094 -4.1130 38 1 3.0701 2.6217 2.3248 39 1 3.9555 1.8947 4.5029 40 1 5.3914 -0.0980 4.6482 41 1 5.9495 -1.3702 2.6165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859519559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -86.334895 kcal Electronic energy + Delta-G solvation = -22561.137337 eV Core-core repulsion = 19161.691971 eV Total energy + Delta-G solvation = -3399.445366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.66121 -40.90132 -38.65265 -37.66588 -35.00738 -34.33248 -31.61000 -31.31218 -29.97672 -28.78728 -26.08158 -24.64096 -24.31370 -23.36071 -22.23886 -21.53912 -18.74894 -18.60417 -17.65062 -17.38103 -17.21836 -17.11994 -16.29955 -16.28278 -15.90401 -15.67031 -15.42265 -15.07047 -14.89236 -14.58796 -13.93672 -13.83138 -13.72651 -13.26729 -13.15027 -12.95644 -12.90848 -12.78205 -12.74013 -12.51154 -12.34844 -12.11987 -11.95779 -11.71489 -11.58536 -11.28702 -10.87011 -10.21000 -9.90129 -9.50924 -9.37445 -8.32508 -6.44546 0.19782 0.25160 1.36743 1.42824 1.50913 2.34003 2.61713 2.70727 3.00660 3.22026 3.46760 3.86281 3.89923 4.07203 4.07894 4.15546 4.21847 4.34139 4.38451 4.42773 4.45350 4.59837 4.64117 4.71267 4.74139 4.78808 4.88427 4.89819 5.11316 5.16059 5.17856 5.22283 5.28884 5.34802 5.39869 5.43806 5.53955 5.81473 5.96073 6.02274 6.42608 6.56069 6.84366 7.27208 8.80055 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.004831 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.162648 B = 5794.440264 C = 6320.903801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.065 3.935 4 N -0.523 5.523 5 C 0.076 3.924 6 C 0.060 3.940 7 O -0.391 6.391 8 C 0.215 3.785 9 C -0.544 4.544 10 H 0.058 0.942 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.269 1.269 17 C 0.051 3.949 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.166 4.166 22 C 0.079 3.921 23 F -0.153 7.153 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.019 0.981 35 H -0.016 1.016 36 H -0.028 1.028 37 H 0.271 0.729 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 2.325 17.104 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.060 4.060 4 N -0.245 5.245 5 C -0.050 4.050 6 C -0.017 4.017 7 O -0.311 6.311 8 C 0.140 3.860 9 C -0.582 4.582 10 H 0.076 0.924 11 C -0.192 4.192 12 N -0.571 5.571 13 Si 0.805 3.195 14 H -0.187 1.187 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.043 4.043 18 C -0.146 4.146 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.185 4.185 22 C 0.059 3.941 23 F -0.132 7.132 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.002 0.998 36 H -0.011 1.011 37 H 0.080 0.920 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.536 1.907 16.550 22.779 hybrid contribution 0.804 -0.160 -0.491 0.956 sum -14.732 1.747 16.058 21.862 Atomic orbital electron populations 1.21659 0.93229 1.02283 1.02579 1.21435 0.97026 0.96205 1.00873 1.22302 0.83795 0.97760 1.02187 1.59269 1.09422 1.28897 1.26914 1.22204 0.93228 0.88334 1.01239 1.22519 0.97531 0.93912 0.87752 1.87901 1.28197 1.71497 1.43467 1.19709 0.79154 0.93848 0.93318 1.21311 0.93664 1.32281 1.10938 0.92417 1.25968 0.94248 0.97399 1.01571 1.70072 0.98415 1.46366 1.42251 0.85248 0.77734 0.78594 0.77902 1.18674 1.19578 1.19439 1.18973 0.99324 0.95398 0.90654 1.21769 1.00618 1.00204 0.91986 1.21491 0.96918 0.96813 0.98107 1.21402 0.96888 0.94507 0.98087 1.21422 1.02698 1.03127 0.91266 1.18396 0.99690 0.92943 0.83058 1.91503 1.91628 1.77724 1.52362 0.92310 0.91390 0.92051 0.93914 0.93584 0.89871 0.92012 0.88992 0.89949 0.93088 0.96317 0.99789 1.01070 0.92049 0.83149 0.81721 0.81765 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 71.98 0.71 -1.79 16 2 C -0.12 -2.96 5.99 30.60 0.18 -2.77 16 3 C 0.06 1.58 4.88 86.30 0.42 2.00 16 4 N -0.52 -16.74 4.21 -695.00 -2.92 -19.67 16 5 C 0.08 2.31 5.28 86.30 0.46 2.76 16 6 C 0.06 2.48 6.08 71.98 0.44 2.92 16 7 O -0.39 -21.04 10.27 -148.98 -1.53 -22.57 16 8 C 0.21 13.15 5.69 71.24 0.41 13.56 16 9 C -0.54 -34.84 9.43 25.60 0.24 -34.59 16 10 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 11 C 0.01 0.39 5.46 84.65 0.46 0.85 16 12 N -0.93 -58.80 13.29 21.45 0.28 -58.51 16 13 Si 0.98 46.90 29.54 68.60 2.03 48.92 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.05 1.54 2.97 38.21 0.11 1.65 16 18 C -0.13 -2.63 8.28 22.39 0.19 -2.45 16 19 C -0.11 -1.91 10.04 22.26 0.22 -1.68 16 20 C -0.09 -1.70 10.04 22.29 0.22 -1.47 16 21 C -0.17 -4.46 10.02 22.29 0.22 -4.23 16 22 C 0.08 2.77 7.24 22.48 0.16 2.93 16 23 F -0.15 -6.94 17.08 44.97 0.77 -6.18 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.24 7.58 -2.39 -0.02 1.22 16 29 H 0.08 1.92 7.74 -2.39 -0.02 1.90 16 30 H 0.06 1.16 6.79 -2.39 -0.02 1.14 16 31 H 0.09 2.68 7.74 -2.39 -0.02 2.66 16 32 H 0.08 1.88 7.04 -2.39 -0.02 1.86 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.02 0.81 7.40 -2.39 -0.02 0.79 16 35 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 36 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.15 2.32 7.04 -2.91 -0.02 2.30 16 39 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -78.38 345.61 4.07 -74.31 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.99 Total: 6.02 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.45 Total: -22.33 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.64 Total: -78.18 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.53 Total: -22.57 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.77 Total: -6.18 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -78.38 4.07 -74.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859519559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.027 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds