Wall clock time and date at job start Tue Mar 31 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47365 * 2 1 4 4 N 1.46900 * 109.47073 * 239.99657 * 2 1 3 5 5 C 1.46905 * 110.99860 * 85.00355 * 4 2 1 6 6 C 1.52993 * 109.47459 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46747 * 300.00088 * 6 5 4 8 8 C 1.52999 * 109.47279 * 59.99912 * 6 5 4 9 9 C 1.50700 * 109.47419 * 180.02562 * 6 5 4 10 10 H 1.07999 * 119.99579 * 1.23384 * 9 6 5 11 11 C 1.37874 * 120.00053 * 181.24283 * 9 6 5 12 12 N 1.31515 * 119.99764 * 194.10750 * 11 9 6 13 13 Si 1.86801 * 120.00168 * 14.10836 * 11 9 6 14 14 H 1.48499 * 109.47207 * 84.53398 * 13 11 9 15 15 H 1.48502 * 109.46794 * 204.53589 * 13 11 9 16 16 H 1.48501 * 109.47139 * 324.53350 * 13 11 9 17 17 C 1.50706 * 109.46750 * 120.00333 * 2 1 3 18 18 C 1.38293 * 119.98352 * 99.72380 * 17 2 1 19 19 C 1.38222 * 120.12305 * 179.72428 * 18 17 2 20 20 C 1.38227 * 120.09262 * 0.54641 * 19 18 17 21 21 C 1.38613 * 119.97281 * 359.72945 * 20 19 18 22 22 O 1.35959 * 120.06557 * 180.02562 * 21 20 19 23 23 C 1.38288 * 119.98252 * 279.99465 * 17 2 1 24 24 F 1.35107 * 120.05048 * 359.97438 * 23 17 2 25 25 H 1.09003 * 109.47183 * 300.00189 * 1 2 3 26 26 H 1.09003 * 109.47036 * 59.99553 * 1 2 3 27 27 H 1.08999 * 109.47608 * 179.97438 * 1 2 3 28 28 H 1.00897 * 111.00426 * 208.95488 * 4 2 1 29 29 H 1.08998 * 109.46784 * 59.99796 * 5 4 2 30 30 H 1.09003 * 109.47211 * 300.00059 * 5 4 2 31 31 H 1.08996 * 109.47328 * 69.51874 * 7 6 5 32 32 H 1.09006 * 109.46942 * 189.51901 * 7 6 5 33 33 H 1.09001 * 109.47338 * 309.51268 * 7 6 5 34 34 H 1.09003 * 109.46928 * 60.00284 * 8 6 5 35 35 H 1.08999 * 109.47361 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.47005 * 300.00318 * 8 6 5 37 37 H 0.97000 * 119.99650 * 179.97438 * 12 11 9 38 38 H 1.07995 * 119.94030 * 0.02562 * 18 17 2 39 39 H 1.08004 * 119.95786 * 180.30047 * 19 18 17 40 40 H 1.08001 * 120.01179 * 179.70509 * 20 19 18 41 41 H 0.96698 * 113.99681 * 269.97701 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 3.9921 -1.0864 -3.2861 8 6 1.6451 -1.6889 -3.8953 9 6 2.6601 0.4057 -4.7514 10 1 2.3844 1.4429 -4.6306 11 6 3.0715 -0.0594 -5.9824 12 7 3.3953 0.7909 -6.9320 13 14 3.1690 -1.8974 -6.3015 14 1 1.8319 -2.4012 -6.7058 15 1 4.1464 -2.1599 -7.3883 16 1 3.6063 -2.5921 -5.0640 17 6 2.0323 -0.7105 1.2305 18 6 2.4534 -2.0251 1.1460 19 6 2.9199 -2.6777 2.2716 20 6 2.9565 -2.0219 3.4878 21 6 2.5300 -0.7061 3.5781 22 8 2.5656 -0.0590 4.7734 23 6 2.0666 -0.0494 2.4446 24 9 1.6506 1.2333 2.5285 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9173 -1.1206 -1.0287 29 1 2.7589 1.0461 -2.1182 30 1 1.0871 0.6163 -2.5526 31 1 3.9210 -1.8878 -2.5509 32 1 4.4259 -1.4757 -4.2072 33 1 4.6249 -0.2896 -2.8951 34 1 0.6498 -1.2947 -4.1007 35 1 2.0105 -2.2276 -4.7696 36 1 1.5985 -2.3679 -3.0438 37 1 3.6850 0.4637 -7.7979 38 1 2.4222 -2.5412 0.1979 39 1 3.2526 -3.7028 2.2016 40 1 3.3168 -2.5346 4.3674 41 1 1.7557 -0.1494 5.2938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872080698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:21 Heat of formation + Delta-G solvation = -49.016202 kcal Electronic energy + Delta-G solvation = -22488.667830 eV Core-core repulsion = 19090.840724 eV Total energy + Delta-G solvation = -3397.827106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.98326 -39.88889 -38.04356 -36.78754 -34.82376 -31.95428 -30.62645 -29.73020 -28.89045 -26.20409 -25.36504 -24.63252 -23.47176 -22.57019 -20.62673 -18.88484 -18.45259 -17.48302 -16.78209 -16.31488 -15.97517 -15.75327 -15.20563 -14.93489 -14.57030 -14.44990 -13.77123 -13.56826 -13.14956 -13.06350 -12.77866 -12.54737 -12.33199 -12.13257 -11.89086 -11.87396 -11.82485 -11.60233 -11.44889 -10.91371 -10.56078 -10.28372 -10.05855 -10.00338 -9.87012 -8.98865 -8.94264 -8.80446 -8.55064 -8.37135 -8.00052 -6.07932 -4.03771 0.87335 0.92187 3.25035 3.32401 3.41064 3.45530 3.70240 4.14523 4.42126 4.44076 4.51281 4.77837 4.90604 5.11133 5.25062 5.28246 5.46505 5.59963 5.75619 5.79269 5.90998 5.98683 6.00999 6.08874 6.13660 6.21520 6.28303 6.36751 6.51144 6.53254 6.61425 6.65903 6.82828 6.90957 7.01034 7.28816 7.34555 7.45069 7.56519 7.74184 7.91429 8.54849 8.96833 9.58010 11.05482 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.004063 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.821283 B = 6889.344087 C = 7267.852184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.121 3.879 3 H 0.055 0.945 4 N -0.683 5.683 5 C 0.083 3.917 6 C 0.041 3.959 7 C -0.144 4.144 8 C -0.134 4.134 9 C -0.513 4.513 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.287 1.287 15 H -0.309 1.309 16 H -0.248 1.248 17 C -0.099 4.099 18 C -0.088 4.088 19 C -0.113 4.113 20 C -0.125 4.125 21 C 0.069 3.931 22 O -0.489 6.489 23 C 0.076 3.924 24 F -0.131 7.131 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.339 0.661 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -7.046 21.105 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 H 0.073 0.927 4 N -0.316 5.316 5 C -0.045 4.045 6 C 0.040 3.960 7 C -0.201 4.201 8 C -0.191 4.191 9 C -0.551 4.551 10 H 0.089 0.911 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.215 1.215 15 H -0.238 1.238 16 H -0.174 1.174 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.143 4.143 21 C 0.023 3.977 22 O -0.299 6.299 23 C 0.056 3.944 24 F -0.110 7.110 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.410 -7.023 20.572 22.004 hybrid contribution 0.287 -0.205 0.089 0.364 sum -3.124 -7.228 20.661 22.110 Atomic orbital electron populations 1.21728 0.93248 1.02456 1.01487 1.20358 0.96360 0.95491 0.86692 0.92707 1.60836 1.33329 1.33978 1.03483 1.22037 1.00187 0.92906 0.89356 1.18463 0.91066 0.93398 0.93102 1.22304 0.99313 0.98451 1.00075 1.22159 0.99856 0.98510 0.98579 1.20854 1.45484 0.96555 0.92181 0.91105 1.24985 0.94057 0.97622 0.96230 1.69969 1.44097 1.34457 1.04877 0.87245 0.76864 0.86974 0.76750 1.21507 1.23787 1.17425 1.20138 1.00573 0.95444 0.93842 1.21151 0.96571 0.93041 0.99857 1.21149 0.99543 1.00526 0.91895 1.21306 1.00997 0.92725 0.99279 1.18387 1.02726 0.91528 0.85051 1.84886 1.42290 1.74161 1.28558 1.17963 1.01841 0.80197 0.94402 1.91489 1.87766 1.34831 1.96867 0.93098 0.91635 0.91855 0.84127 0.95763 0.91520 0.95506 0.92733 0.94189 0.93593 0.95184 0.93831 0.92746 0.83371 0.84787 0.84661 0.75483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.39 37.16 0.35 -1.38 16 2 C 0.12 1.72 2.55 -68.86 -0.18 1.54 16 3 H 0.06 0.85 7.60 -51.93 -0.39 0.46 16 4 N -0.68 -10.75 4.82 -107.95 -0.52 -11.27 16 5 C 0.08 1.61 4.37 -3.82 -0.02 1.59 16 6 C 0.04 0.91 0.57 -155.66 -0.09 0.82 16 7 C -0.14 -3.02 7.24 37.16 0.27 -2.75 16 8 C -0.13 -2.86 7.54 37.16 0.28 -2.58 16 9 C -0.51 -14.02 8.62 -34.44 -0.30 -14.32 16 10 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 11 C 0.07 2.07 5.32 -17.82 -0.09 1.98 16 12 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 13 Si 0.89 21.86 22.79 -169.99 -3.87 17.98 16 14 H -0.29 -7.06 7.10 56.52 0.40 -6.66 16 15 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 16 H -0.25 -5.61 4.65 56.52 0.26 -5.35 16 17 C -0.10 -1.25 4.99 -104.58 -0.52 -1.78 16 18 C -0.09 -0.98 8.87 -39.57 -0.35 -1.33 16 19 C -0.11 -1.04 10.04 -39.59 -0.40 -1.43 16 20 C -0.12 -1.15 9.98 -39.45 -0.39 -1.55 16 21 C 0.07 0.76 6.71 -39.18 -0.26 0.50 16 22 O -0.49 -4.90 13.37 -19.61 -0.26 -5.16 16 23 C 0.08 0.98 7.25 -39.30 -0.28 0.69 16 24 F -0.13 -1.84 16.51 2.25 0.04 -1.80 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.90 7.45 -51.93 -0.39 0.52 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.34 5.15 5.26 -39.29 -0.21 4.94 16 29 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 30 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 31 H 0.03 0.48 7.06 -51.93 -0.37 0.11 16 32 H 0.05 1.23 4.31 -51.93 -0.22 1.00 16 33 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16 36 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 38 H 0.15 1.63 6.71 -52.49 -0.35 1.27 16 39 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.39 1.96 9.06 45.56 0.41 2.37 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -31.16 321.49 -6.05 -37.21 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.06 Total: 4.72 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.99 Total: -19.98 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.25 Total: -37.81 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.26 Total: -5.16 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -3.87 Total: 17.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.16 -6.05 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872080698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.804 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds