Wall clock time and date at job start Tue Mar 31 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47365 * 2 1 4 4 N 1.46900 * 109.47073 * 239.99657 * 2 1 3 5 5 C 1.46905 * 110.99860 * 85.00355 * 4 2 1 6 6 C 1.52993 * 109.47459 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46747 * 300.00088 * 6 5 4 8 8 C 1.52999 * 109.47279 * 59.99912 * 6 5 4 9 9 C 1.50700 * 109.47419 * 180.02562 * 6 5 4 10 10 H 1.07999 * 119.99579 * 1.23384 * 9 6 5 11 11 C 1.37874 * 120.00053 * 181.24283 * 9 6 5 12 12 N 1.31515 * 119.99764 * 194.10750 * 11 9 6 13 13 Si 1.86801 * 120.00168 * 14.10836 * 11 9 6 14 14 H 1.48499 * 109.47207 * 84.53398 * 13 11 9 15 15 H 1.48502 * 109.46794 * 204.53589 * 13 11 9 16 16 H 1.48501 * 109.47139 * 324.53350 * 13 11 9 17 17 C 1.50706 * 109.46750 * 120.00333 * 2 1 3 18 18 C 1.38293 * 119.98352 * 99.72380 * 17 2 1 19 19 C 1.38222 * 120.12305 * 179.72428 * 18 17 2 20 20 C 1.38227 * 120.09262 * 0.54641 * 19 18 17 21 21 C 1.38613 * 119.97281 * 359.72945 * 20 19 18 22 22 O 1.35959 * 120.06557 * 180.02562 * 21 20 19 23 23 C 1.38288 * 119.98252 * 279.99465 * 17 2 1 24 24 F 1.35107 * 120.05048 * 359.97438 * 23 17 2 25 25 H 1.09003 * 109.47183 * 300.00189 * 1 2 3 26 26 H 1.09003 * 109.47036 * 59.99553 * 1 2 3 27 27 H 1.08999 * 109.47608 * 179.97438 * 1 2 3 28 28 H 1.00897 * 111.00426 * 208.95488 * 4 2 1 29 29 H 1.08998 * 109.46784 * 59.99796 * 5 4 2 30 30 H 1.09003 * 109.47211 * 300.00059 * 5 4 2 31 31 H 1.08996 * 109.47328 * 69.51874 * 7 6 5 32 32 H 1.09006 * 109.46942 * 189.51901 * 7 6 5 33 33 H 1.09001 * 109.47338 * 309.51268 * 7 6 5 34 34 H 1.09003 * 109.46928 * 60.00284 * 8 6 5 35 35 H 1.08999 * 109.47361 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.47005 * 300.00318 * 8 6 5 37 37 H 0.97000 * 119.99650 * 179.97438 * 12 11 9 38 38 H 1.07995 * 119.94030 * 0.02562 * 18 17 2 39 39 H 1.08004 * 119.95786 * 180.30047 * 19 18 17 40 40 H 1.08001 * 120.01179 * 179.70509 * 20 19 18 41 41 H 0.96698 * 113.99681 * 269.97701 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 3.9921 -1.0864 -3.2861 8 6 1.6451 -1.6889 -3.8953 9 6 2.6601 0.4057 -4.7514 10 1 2.3844 1.4429 -4.6306 11 6 3.0715 -0.0594 -5.9824 12 7 3.3953 0.7909 -6.9320 13 14 3.1690 -1.8974 -6.3015 14 1 1.8319 -2.4012 -6.7058 15 1 4.1464 -2.1599 -7.3883 16 1 3.6063 -2.5921 -5.0640 17 6 2.0323 -0.7105 1.2305 18 6 2.4534 -2.0251 1.1460 19 6 2.9199 -2.6777 2.2716 20 6 2.9565 -2.0219 3.4878 21 6 2.5300 -0.7061 3.5781 22 8 2.5656 -0.0590 4.7734 23 6 2.0666 -0.0494 2.4446 24 9 1.6506 1.2333 2.5285 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9173 -1.1206 -1.0287 29 1 2.7589 1.0461 -2.1182 30 1 1.0871 0.6163 -2.5526 31 1 3.9210 -1.8878 -2.5509 32 1 4.4259 -1.4757 -4.2072 33 1 4.6249 -0.2896 -2.8951 34 1 0.6498 -1.2947 -4.1007 35 1 2.0105 -2.2276 -4.7696 36 1 1.5985 -2.3679 -3.0438 37 1 3.6850 0.4637 -7.7979 38 1 2.4222 -2.5412 0.1979 39 1 3.2526 -3.7028 2.2016 40 1 3.3168 -2.5346 4.3674 41 1 1.7557 -0.1494 5.2938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872080698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:21 Heat of formation + Delta-G solvation = -71.296632 kcal Electronic energy + Delta-G solvation = -22489.633982 eV Core-core repulsion = 19090.840724 eV Total energy + Delta-G solvation = -3398.793258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95161 -40.74121 -39.26416 -37.97421 -36.11398 -33.91708 -31.83914 -30.56393 -29.96466 -27.89537 -27.12204 -26.33335 -24.49330 -23.46475 -21.65959 -20.61605 -19.35572 -18.36989 -18.05994 -17.68588 -17.44804 -16.98010 -16.73960 -15.92169 -15.55566 -15.36834 -15.07058 -14.86942 -14.74798 -14.54267 -14.42739 -13.87670 -13.67136 -13.57204 -13.33706 -13.01769 -12.84444 -12.72944 -12.46616 -12.32983 -12.15828 -11.89090 -11.82780 -11.60636 -11.43905 -10.91896 -10.56313 -10.29801 -9.78681 -9.62492 -9.36885 -8.28032 -6.27614 0.08042 0.11517 1.39078 1.40147 1.52527 2.37653 2.48593 2.88584 3.09236 3.27095 3.34545 3.55004 4.02300 4.07142 4.21877 4.23113 4.36861 4.40384 4.47497 4.59833 4.72011 4.79467 4.87993 4.92246 4.95753 4.97070 5.03993 5.08913 5.11472 5.22361 5.28455 5.30550 5.35036 5.41585 5.60445 5.76798 5.78271 5.87743 6.10195 6.34324 6.51294 6.70346 6.79017 7.37719 8.89396 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.004063 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.821283 B = 6889.344087 C = 7267.852184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.123 3.877 3 H 0.034 0.966 4 N -0.668 5.668 5 C 0.097 3.903 6 C 0.036 3.964 7 C -0.142 4.142 8 C -0.130 4.130 9 C -0.515 4.515 10 H 0.024 0.976 11 C 0.015 3.985 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.285 1.285 15 H -0.318 1.318 16 H -0.207 1.207 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.100 4.100 20 C -0.118 4.118 21 C 0.067 3.933 22 O -0.502 6.502 23 C 0.048 3.952 24 F -0.147 7.147 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.345 0.655 29 H 0.006 0.994 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -10.664 23.692 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.013 3.987 3 H 0.052 0.948 4 N -0.301 5.301 5 C -0.032 4.032 6 C 0.035 3.965 7 C -0.199 4.199 8 C -0.187 4.187 9 C -0.554 4.554 10 H 0.043 0.957 11 C -0.182 4.182 12 N -0.590 5.590 13 Si 0.777 3.223 14 H -0.212 1.212 15 H -0.248 1.248 16 H -0.131 1.131 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.136 4.136 21 C 0.022 3.978 22 O -0.314 6.314 23 C 0.028 3.972 24 F -0.126 7.126 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.166 0.834 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.171 0.829 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.136 -10.650 23.213 25.732 hybrid contribution 0.174 1.035 -0.591 1.204 sum -2.963 -9.615 22.622 24.758 Atomic orbital electron populations 1.21675 0.92589 1.02862 1.01255 1.20286 0.96885 0.94579 0.86956 0.94828 1.60758 1.33600 1.32747 1.03037 1.21697 0.98915 0.92675 0.89948 1.18456 0.92848 0.93178 0.92008 1.22218 0.97659 0.99553 1.00469 1.22087 0.98871 0.98204 0.99503 1.21218 1.44109 0.95638 0.94390 0.95717 1.25851 0.93904 1.02546 0.95921 1.70126 1.46381 1.36946 1.05578 0.86301 0.76748 0.81460 0.77814 1.21221 1.24751 1.13110 1.19984 1.02021 0.96292 0.92887 1.21269 0.96845 0.92274 1.00931 1.21510 0.97632 1.01724 0.90872 1.21645 0.99661 0.91809 1.00471 1.18567 1.02277 0.92156 0.84834 1.84827 1.43895 1.74383 1.28340 1.18264 1.03636 0.79937 0.95400 1.91440 1.88214 1.35985 1.96988 0.92328 0.92897 0.91015 0.83379 0.97561 0.92628 0.91491 0.94101 0.94577 0.94311 0.95948 0.90486 0.92871 0.82926 0.81500 0.81864 0.73070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.39 71.98 0.68 -2.55 16 2 C 0.12 3.40 2.55 44.17 0.11 3.52 16 3 H 0.03 1.08 7.60 -2.39 -0.02 1.06 16 4 N -0.67 -19.85 4.82 -495.45 -2.39 -22.24 16 5 C 0.10 3.73 4.37 86.30 0.38 4.11 16 6 C 0.04 1.57 0.57 -52.93 -0.03 1.54 16 7 C -0.14 -5.57 7.24 71.98 0.52 -5.05 16 8 C -0.13 -5.18 7.54 71.98 0.54 -4.64 16 9 C -0.52 -28.99 8.62 25.60 0.22 -28.77 16 10 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 11 C 0.01 0.84 5.32 84.65 0.45 1.29 16 12 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 13 Si 0.95 44.56 22.79 68.60 1.56 46.12 16 14 H -0.28 -13.20 7.10 99.48 0.71 -12.50 16 15 H -0.32 -15.34 7.11 99.48 0.71 -14.63 16 16 H -0.21 -8.40 4.65 99.48 0.46 -7.94 16 17 C -0.11 -2.63 4.99 -19.84 -0.10 -2.73 16 18 C -0.10 -1.79 8.87 22.28 0.20 -1.59 16 19 C -0.10 -1.37 10.04 22.26 0.22 -1.15 16 20 C -0.12 -1.70 9.98 22.36 0.22 -1.48 16 21 C 0.07 1.33 6.71 22.53 0.15 1.49 16 22 O -0.50 -8.98 13.37 -93.09 -1.24 -10.22 16 23 C 0.05 1.17 7.25 22.45 0.16 1.33 16 24 F -0.15 -4.17 16.51 44.97 0.74 -3.43 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.46 7.45 -2.39 -0.02 1.44 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.35 9.48 5.26 -89.70 -0.47 9.01 16 29 H 0.01 0.26 8.05 -2.39 -0.02 0.24 16 30 H 0.06 2.25 7.44 -2.39 -0.02 2.23 16 31 H 0.07 2.09 7.06 -2.39 -0.02 2.07 16 32 H 0.04 1.71 4.31 -2.38 -0.01 1.70 16 33 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.93 2.26 -2.39 -0.01 0.92 16 36 H 0.08 2.55 7.60 -2.38 -0.02 2.54 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.15 2.70 6.71 -2.91 -0.02 2.68 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.41 3.23 9.06 -74.06 -0.67 2.56 16 Total: -1.00 -70.15 321.49 2.37 -67.78 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.33 Total: 16.47 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.73 Total: -34.66 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.09 Total: -82.07 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.24 Total: -10.22 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.74 Total: -3.43 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.56 Total: 46.12 kcal Total: -70.15 2.37 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872080698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.517 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds