Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00134 * 6 5 4 8 8 C 1.52999 * 109.47317 * 59.99645 * 6 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 18 18 C 1.38166 * 119.98691 * 99.72102 * 17 2 1 19 19 C 1.38690 * 119.96741 * 179.76839 * 18 17 2 20 20 O 1.35948 * 120.03422 * 180.25471 * 19 18 17 21 21 C 1.38731 * 119.93672 * 0.50897 * 19 18 17 22 22 C 1.38121 * 119.97165 * 359.74581 * 21 19 18 23 23 C 1.38437 * 119.98143 * 279.99867 * 17 2 1 24 24 F 1.35100 * 119.96852 * 0.02562 * 23 17 2 25 25 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 27 27 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 28 28 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 31 31 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 32 32 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 34 34 H 1.09002 * 109.46716 * 60.00091 * 8 6 5 35 35 H 1.09000 * 109.47486 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.47362 * 300.00732 * 8 6 5 37 37 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 38 38 H 1.07998 * 120.02122 * 0.02562 * 18 17 2 39 39 H 0.96696 * 113.99708 * 270.26042 * 20 19 18 40 40 H 1.08004 * 120.01482 * 179.72280 * 21 19 18 41 41 H 1.08007 * 119.98780 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 3.9935 -1.0850 -3.2853 8 6 1.6472 -1.6890 -3.8955 9 6 2.6600 0.4060 -4.7515 10 1 2.3642 1.4382 -4.6357 11 6 3.0971 -0.0527 -5.9760 12 7 3.4577 -1.3096 -6.1168 13 14 3.1755 1.1106 -7.4355 14 1 2.7184 2.4603 -7.0177 15 1 4.5740 1.1927 -7.9284 16 1 2.2973 0.6038 -8.5202 17 6 2.0323 -0.7106 1.2304 18 6 2.4530 -2.0239 1.1459 19 6 2.9198 -2.6760 2.2775 20 8 3.3389 -3.9666 2.1949 21 6 2.9536 -2.0116 3.4949 22 6 2.5275 -0.7004 3.5775 23 6 2.0666 -0.0489 2.4458 24 9 1.6492 1.2334 2.5282 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9173 -1.1205 -1.0288 29 1 1.0870 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.9468 -1.7640 -2.4340 32 1 4.3592 -1.6235 -4.1595 33 1 4.6696 -0.2612 -3.0564 34 1 0.6517 -1.2956 -4.1014 35 1 2.0134 -2.2275 -4.7697 36 1 1.6005 -2.3681 -3.0442 37 1 3.7656 -1.6322 -6.9783 38 1 2.4223 -2.5413 0.1984 39 1 2.6398 -4.6175 2.3452 40 1 3.3126 -2.5196 4.3778 41 1 2.5533 -0.1830 4.5252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872080743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -68.317253 kcal Electronic energy + Delta-G solvation = -22419.231419 eV Core-core repulsion = 19020.567356 eV Total energy + Delta-G solvation = -3398.664062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.94496 -39.91692 -37.67639 -36.43852 -34.70443 -31.83503 -30.33307 -29.55216 -28.44633 -25.57407 -25.24331 -24.50950 -23.53946 -22.32773 -20.49632 -18.62078 -18.10407 -17.62844 -16.82557 -16.07139 -15.76116 -15.47136 -15.07871 -14.60507 -14.31957 -14.11055 -13.83374 -13.59292 -13.02070 -12.83148 -12.69843 -12.42227 -11.98158 -11.92040 -11.65751 -11.48655 -11.39657 -11.09356 -10.93834 -10.61775 -10.58217 -10.40704 -10.16339 -10.05261 -9.39247 -9.17069 -9.02087 -8.61920 -8.54678 -8.28954 -7.80254 -5.90772 -4.00945 0.91032 1.04235 3.28961 3.31011 3.39440 3.43032 4.00783 4.14758 4.41177 4.51722 4.57197 4.81118 5.02879 5.20112 5.34965 5.43039 5.56111 5.63242 5.78505 5.87265 5.99634 6.08019 6.20791 6.22943 6.33298 6.36856 6.48098 6.60830 6.72188 6.89867 7.06978 7.17316 7.36970 7.45940 7.48469 7.69631 7.76253 7.82809 7.90311 8.21089 8.34459 8.56177 9.00494 9.64134 11.09811 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.004115 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.589345 B = 6803.089312 C = 7434.245855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.120 3.880 3 H 0.053 0.947 4 N -0.680 5.680 5 C 0.075 3.925 6 C 0.069 3.931 7 C -0.133 4.133 8 C -0.118 4.118 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.094 4.094 18 C -0.104 4.104 19 C 0.096 3.904 20 O -0.495 6.495 21 C -0.126 4.126 22 C -0.140 4.140 23 C 0.090 3.910 24 F -0.137 7.137 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.059 0.941 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.391 0.609 40 H 0.135 0.865 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -2.498 18.385 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.071 0.929 4 N -0.313 5.313 5 C -0.054 4.054 6 C 0.068 3.932 7 C -0.190 4.190 8 C -0.176 4.176 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.096 4.096 18 C -0.123 4.123 19 C 0.052 3.948 20 O -0.305 6.305 21 C -0.144 4.144 22 C -0.159 4.159 23 C 0.070 3.930 24 F -0.115 7.115 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.067 0.933 38 H 0.171 0.829 39 H 0.247 0.753 40 H 0.153 0.847 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.289 -2.557 17.946 18.423 hybrid contribution 0.380 1.220 -0.442 1.352 sum -2.909 -1.337 17.504 17.794 Atomic orbital electron populations 1.21720 0.93376 1.02407 1.01319 1.20385 0.96311 0.95370 0.86983 0.92913 1.60842 1.33540 1.33763 1.03200 1.22227 0.99432 0.93075 0.90621 1.18099 0.91813 0.93223 0.90054 1.21842 0.98812 0.98427 0.99969 1.21632 0.97320 0.98336 1.00288 1.21137 1.43381 0.95874 0.94038 0.92955 1.24882 0.95252 0.94988 0.98446 1.69846 1.44655 1.13949 1.23871 0.86605 0.77526 0.81283 0.82955 1.19961 1.21184 1.21113 1.20075 1.00298 0.94811 0.94405 1.21390 0.97000 0.94018 0.99887 1.18477 0.98192 0.85879 0.92296 1.84864 1.38486 1.13196 1.93931 1.21223 1.00826 0.94663 0.97699 1.20936 1.01721 0.95334 0.97866 1.17549 1.01401 0.79687 0.94332 1.91488 1.87885 1.35241 1.96926 0.91926 0.93141 0.91759 0.83953 0.92281 0.96729 0.97140 0.89755 0.96207 0.96287 0.90751 0.96174 0.93260 0.82913 0.75349 0.84690 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.39 37.16 0.35 -1.49 16 2 C 0.12 1.83 2.55 -68.86 -0.18 1.65 16 3 H 0.05 0.86 7.60 -51.93 -0.39 0.47 16 4 N -0.68 -11.93 4.82 -107.95 -0.52 -12.45 16 5 C 0.07 1.55 4.38 -3.83 -0.02 1.53 16 6 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 7 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 8 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 9 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 11 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 12 N -0.88 -24.43 9.35 55.43 0.52 -23.92 16 13 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 C -0.09 -1.29 4.99 -104.58 -0.52 -1.82 16 18 C -0.10 -1.36 8.81 -39.44 -0.35 -1.71 16 19 C 0.10 1.10 6.70 -39.23 -0.26 0.83 16 20 O -0.49 -5.09 13.50 -19.58 -0.26 -5.35 16 21 C -0.13 -1.25 9.98 -39.44 -0.39 -1.64 16 22 C -0.14 -1.46 10.02 -39.54 -0.40 -1.86 16 23 C 0.09 1.15 7.24 -39.42 -0.29 0.87 16 24 F -0.14 -1.85 16.66 2.25 0.04 -1.81 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.95 7.45 -51.92 -0.39 0.56 16 28 H 0.34 6.00 5.03 -39.29 -0.20 5.80 16 29 H 0.06 1.24 7.44 -51.93 -0.39 0.86 16 30 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 31 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 36 H 0.02 0.43 7.60 -51.93 -0.39 0.04 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.15 2.11 6.72 -52.49 -0.35 1.76 16 39 H 0.39 2.09 9.06 45.56 0.41 2.50 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -28.81 331.40 -7.33 -36.14 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.17 Total: 5.91 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -1.91 Total: -19.64 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.00 Total: -36.37 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.26 Total: -5.35 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.81 -7.33 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872080743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.174 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds