Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47857 * 2 1 4 4 N 1.46908 * 109.47350 * 120.00394 * 2 1 3 5 5 C 1.46897 * 111.00008 * 274.99794 * 4 2 1 6 6 C 1.52998 * 109.47444 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47268 * 300.00315 * 6 5 4 8 8 C 1.53008 * 109.46762 * 59.99857 * 6 5 4 9 9 C 1.50693 * 109.47267 * 179.97438 * 6 5 4 10 10 H 1.08000 * 120.00113 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99731 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00164 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99589 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47159 * 60.00332 * 13 11 9 15 15 H 1.48507 * 109.46815 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47526 * 300.00143 * 13 11 9 17 17 C 1.50703 * 109.47111 * 239.99892 * 2 1 3 18 18 C 1.38174 * 119.98772 * 265.00707 * 17 2 1 19 19 C 1.38683 * 119.96640 * 180.27585 * 18 17 2 20 20 O 1.35955 * 120.02610 * 179.69409 * 19 18 17 21 21 C 1.38727 * 119.94381 * 359.44037 * 19 18 17 22 22 C 1.38131 * 119.96757 * 0.58237 * 21 19 18 23 23 C 1.38434 * 119.98149 * 85.02310 * 17 2 1 24 24 F 1.35096 * 119.96950 * 359.97438 * 23 17 2 25 25 H 1.08994 * 109.47247 * 59.99456 * 1 2 3 26 26 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46757 * 299.99986 * 1 2 3 28 28 H 1.00904 * 110.99349 * 38.94974 * 4 2 1 29 29 H 1.08998 * 109.47004 * 300.00009 * 5 4 2 30 30 H 1.09007 * 109.47290 * 59.99786 * 5 4 2 31 31 H 1.09005 * 109.47405 * 59.99395 * 7 6 5 32 32 H 1.08996 * 109.47450 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46850 * 300.00094 * 7 6 5 34 34 H 1.08998 * 109.46889 * 60.00053 * 8 6 5 35 35 H 1.08996 * 109.46655 * 180.02562 * 8 6 5 36 36 H 1.08997 * 109.46812 * 300.00233 * 8 6 5 37 37 H 0.96993 * 119.99918 * 179.97438 * 12 11 9 38 38 H 1.08002 * 120.01230 * 359.97438 * 18 17 2 39 39 H 0.96702 * 113.99178 * 90.00025 * 20 19 18 40 40 H 1.07994 * 120.01951 * 180.28002 * 21 19 18 41 41 H 1.07999 * 119.98838 * 179.68116 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5952 -0.5334 3.5745 7 6 1.6453 -1.6892 3.8952 8 6 3.9923 -1.0865 3.2861 9 6 2.6602 0.4055 4.7514 10 1 2.3650 1.4379 4.6356 11 6 3.0956 -0.0539 5.9764 12 7 3.4546 -1.3112 6.1175 13 14 3.1756 1.1097 7.4355 14 1 1.8197 1.6470 7.7151 15 1 3.6733 0.3761 8.6270 16 1 4.0979 2.2312 7.1244 17 6 2.0323 -0.7104 -1.2305 18 6 2.3607 -2.0511 -1.1681 19 6 2.8284 -2.7031 -2.2993 20 8 3.1577 -4.0207 -2.2378 21 6 2.9548 -2.0109 -3.4949 22 6 2.6262 -0.6706 -3.5543 23 6 2.1648 -0.0194 -2.4226 24 9 1.8432 1.2914 -2.4822 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.4495 -1.4980 1.4099 29 1 2.7589 1.0460 2.1182 30 1 1.0871 0.6162 2.5526 31 1 1.5986 -2.3682 3.0438 32 1 2.0102 -2.2273 4.7700 33 1 0.6500 -1.2951 4.1006 34 1 4.6690 -0.2631 3.0575 35 1 4.3573 -1.6253 4.1604 36 1 3.9456 -1.7654 2.4346 37 1 3.7612 -1.6342 6.9792 38 1 2.2578 -2.5898 -0.2377 39 1 2.4247 -4.6190 -2.4373 40 1 3.3145 -2.5185 -4.3776 41 1 2.7294 -0.1302 -4.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872080744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -69.683312 kcal Electronic energy + Delta-G solvation = -22405.517171 eV Core-core repulsion = 19006.793872 eV Total energy + Delta-G solvation = -3398.723299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.87303 -39.80266 -37.69245 -36.42130 -34.74148 -31.83262 -30.34192 -29.43136 -28.30039 -25.57288 -25.23346 -24.41534 -23.60517 -22.32368 -20.68288 -18.64664 -18.05193 -17.55114 -16.72852 -16.04842 -15.70803 -15.29321 -14.95888 -14.43914 -14.26476 -14.12087 -13.85957 -13.68933 -12.99595 -12.85723 -12.80609 -12.47958 -12.12384 -11.88456 -11.67184 -11.51054 -11.24151 -11.13343 -10.92642 -10.64584 -10.62658 -10.43784 -10.18763 -10.04760 -9.39588 -9.13521 -8.94841 -8.63825 -8.46600 -8.28273 -7.77698 -5.90543 -4.00949 1.00766 1.16052 3.33362 3.38207 3.39552 3.40992 4.07119 4.23200 4.41888 4.54317 4.68075 4.88927 5.11022 5.28740 5.30380 5.34957 5.40201 5.66595 5.73165 5.86978 5.95026 6.05328 6.15061 6.28566 6.32552 6.36402 6.44485 6.69367 6.70865 6.88535 7.06059 7.16330 7.38270 7.46560 7.55024 7.68879 7.75887 7.83108 7.90455 8.21014 8.34620 8.55982 9.00072 9.63981 11.09947 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.004107 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.936742 B = 6816.590198 C = 7415.963529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 H 0.089 0.911 4 N -0.677 5.677 5 C 0.076 3.924 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.507 4.507 10 H 0.051 0.949 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.889 3.111 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.076 4.076 18 C -0.091 4.091 19 C 0.092 3.908 20 O -0.495 6.495 21 C -0.128 4.128 22 C -0.141 4.141 23 C 0.087 3.913 24 F -0.139 7.139 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.339 0.661 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.009 0.991 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.146 0.854 39 H 0.388 0.612 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -2.665 -17.866 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.107 0.893 4 N -0.309 5.309 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.189 4.189 8 C -0.177 4.177 9 C -0.546 4.546 10 H 0.069 0.931 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.078 4.078 18 C -0.109 4.109 19 C 0.048 3.952 20 O -0.304 6.304 21 C -0.146 4.146 22 C -0.160 4.160 23 C 0.067 3.933 24 F -0.118 7.118 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.243 0.757 40 H 0.151 0.849 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.688 -2.444 -17.709 18.253 hybrid contribution -1.340 0.836 0.868 1.802 sum -5.028 -1.608 -16.841 17.649 Atomic orbital electron populations 1.22443 0.96240 1.02203 1.02426 1.20360 0.92606 0.97645 0.88726 0.89328 1.60713 1.56093 1.10217 1.03857 1.22201 0.98039 0.94780 0.90201 1.18089 0.92565 0.92644 0.89823 1.21833 0.97810 0.98731 1.00559 1.21643 0.97718 0.98665 0.99673 1.21059 1.43714 0.95810 0.94027 0.93070 1.24876 0.95193 0.94991 0.98445 1.69818 1.44500 1.13951 1.24037 0.86725 0.78266 0.81099 0.82234 1.20493 1.21367 1.20407 1.19901 0.99935 0.94177 0.93795 1.21230 0.96918 0.93910 0.98864 1.18494 0.99259 0.84916 0.92576 1.84888 1.39384 1.13462 1.92712 1.21184 1.01450 0.94176 0.97828 1.20900 1.02244 0.95064 0.97825 1.17551 1.02595 0.78483 0.94672 1.91475 1.90549 1.32744 1.96993 0.92418 0.92379 0.91665 0.84137 0.92457 0.96535 0.97160 0.89797 0.96216 0.96307 0.90747 0.96122 0.93136 0.83664 0.75658 0.84870 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.14 37.15 0.34 -1.92 16 2 C 0.12 1.75 2.57 -68.86 -0.18 1.57 16 3 H 0.09 1.41 7.44 -51.93 -0.39 1.03 16 4 N -0.68 -11.69 4.46 -107.95 -0.48 -12.17 16 5 C 0.08 1.55 4.38 -3.83 -0.02 1.54 16 6 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 7 C -0.13 -3.04 7.92 37.16 0.29 -2.75 16 8 C -0.12 -2.92 8.09 37.16 0.30 -2.61 16 9 C -0.51 -13.59 8.01 -34.44 -0.28 -13.86 16 10 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 11 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 12 N -0.88 -24.41 9.35 55.43 0.52 -23.89 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.08 -1.06 5.06 -104.57 -0.53 -1.59 16 18 C -0.09 -1.21 9.26 -39.44 -0.37 -1.58 16 19 C 0.09 1.10 6.70 -39.24 -0.26 0.83 16 20 O -0.49 -5.31 13.51 -19.60 -0.26 -5.58 16 21 C -0.13 -1.34 9.99 -39.44 -0.39 -1.73 16 22 C -0.14 -1.54 10.02 -39.53 -0.40 -1.94 16 23 C 0.09 1.14 7.24 -39.42 -0.29 0.85 16 24 F -0.14 -1.91 16.56 2.25 0.04 -1.87 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.88 7.45 -51.93 -0.39 0.50 16 28 H 0.34 5.65 5.94 -39.29 -0.23 5.42 16 29 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 30 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 31 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 32 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 36 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.15 2.01 6.89 -52.49 -0.36 1.65 16 39 H 0.39 2.14 9.06 45.56 0.41 2.55 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -28.94 332.16 -7.36 -36.30 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.20 Total: 6.04 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.95 Total: -19.93 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.04 Total: -36.06 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.26 Total: -5.58 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.94 -7.36 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872080744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.386 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds