Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38771 * 120.04254 * 359.72712 * 4 3 2 6 6 C 1.38134 * 119.99048 * 179.79297 * 5 4 3 7 7 C 1.38248 * 120.08091 * 0.45781 * 6 5 4 8 8 C 1.38474 * 120.08899 * 359.79052 * 7 6 5 9 9 F 1.35092 * 120.00171 * 179.97438 * 8 7 6 10 10 C 1.38388 * 119.99949 * 359.97438 * 8 7 6 11 11 C 1.50706 * 120.03592 * 180.02562 * 10 8 7 12 12 N 1.46900 * 109.46921 * 269.97001 * 11 10 8 13 13 C 1.46899 * 110.99567 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46750 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46892 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47002 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99894 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99905 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00248 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47648 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47390 * 120.00126 * 20 18 16 23 23 H 1.48508 * 109.47211 * 239.99821 * 20 18 16 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07997 * 120.00353 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.95569 * 180.21131 * 6 5 4 31 31 H 1.07999 * 119.95743 * 179.77171 * 7 6 5 32 32 H 1.08993 * 109.47164 * 29.97852 * 11 10 8 33 33 H 1.09009 * 109.47008 * 149.97544 * 11 10 8 34 34 H 1.00894 * 111.00473 * 303.96033 * 12 11 10 35 35 H 1.08995 * 109.47713 * 300.00128 * 13 12 11 36 36 H 1.09001 * 109.47080 * 60.00786 * 13 12 11 37 37 H 1.08995 * 109.46892 * 300.00355 * 14 13 12 38 38 H 1.09001 * 109.46912 * 60.00407 * 14 13 12 39 39 H 1.08994 * 109.47033 * 300.00073 * 15 14 13 40 40 H 1.09001 * 109.46692 * 60.00119 * 15 14 13 41 41 H 0.96997 * 119.99783 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1997 0.4255 0.0047 6 6 5.5690 0.6077 -0.0002 7 6 6.0981 1.8850 -0.0007 8 6 5.2568 2.9849 -0.0007 9 9 5.7757 4.2322 -0.0007 10 6 3.8845 2.8064 -0.0007 11 6 2.9682 4.0029 -0.0013 12 7 2.6698 4.3918 1.3835 13 6 1.7774 5.5580 1.4221 14 6 1.4906 5.9327 2.8776 15 6 0.5606 7.1470 2.9178 16 6 0.2786 7.5165 4.3513 17 1 0.7191 6.9429 5.1534 18 6 -0.5416 8.5868 4.6388 19 7 -1.0775 9.2856 3.6620 20 14 -0.8905 9.0452 6.4157 21 1 -0.1727 8.1097 7.3185 22 1 -0.4261 10.4327 6.6694 23 1 -2.3506 8.9573 6.6721 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7878 -0.5728 0.0087 30 1 6.2270 -0.2487 0.0004 31 1 7.1689 2.0251 -0.0008 32 1 3.4540 4.8323 -0.5151 33 1 2.0408 3.7501 -0.5155 34 1 2.2776 3.6187 1.8997 35 1 2.2554 6.3981 0.9184 36 1 0.8418 5.3164 0.9176 37 1 1.0128 5.0927 3.3816 38 1 2.4264 6.1744 3.3816 39 1 1.0381 7.9871 2.4136 40 1 -0.3750 6.9048 2.4138 41 1 -1.6542 10.0388 3.8643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873040814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -98.425650 kcal Electronic energy + Delta-G solvation = -21364.932124 eV Core-core repulsion = 17964.962464 eV Total energy + Delta-G solvation = -3399.969660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.91518 -41.26197 -38.49373 -37.71225 -35.61131 -33.82132 -32.67178 -31.55634 -30.50504 -28.38611 -26.12007 -24.95051 -24.01334 -22.86808 -22.35525 -21.80582 -19.43735 -18.51676 -18.00427 -17.21503 -17.10802 -16.95880 -16.59771 -16.53666 -16.41972 -15.55742 -15.37647 -15.34656 -14.62951 -14.38466 -14.12705 -13.83922 -13.68540 -13.51284 -13.38270 -13.25379 -12.84041 -12.70895 -12.67672 -12.47327 -12.43913 -12.24208 -11.81575 -11.63445 -11.57036 -11.41072 -11.12377 -10.56913 -9.80910 -9.44479 -9.25000 -8.20903 -6.32278 0.10191 0.27907 1.39349 1.40236 1.54030 2.10028 2.40558 2.53249 3.11926 3.29824 3.40762 3.67662 3.79583 3.95836 4.07248 4.09450 4.18632 4.25774 4.30448 4.34618 4.41388 4.54837 4.60713 4.67959 4.84978 4.93495 4.93756 4.98675 5.05181 5.14941 5.18499 5.22391 5.26391 5.34170 5.49939 5.72236 5.75756 5.83847 5.95260 6.25236 6.35002 6.39564 6.84232 7.36893 8.91450 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.003249 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.456207 B = 8617.048102 C = 9572.543099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.047 3.953 3 O -0.331 6.331 4 C 0.155 3.845 5 C -0.216 4.216 6 C -0.041 4.041 7 C -0.196 4.196 8 C 0.132 3.868 9 F -0.144 7.144 10 C -0.175 4.175 11 C 0.112 3.888 12 N -0.683 5.683 13 C 0.073 3.927 14 C -0.090 4.090 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.276 1.276 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.051 0.949 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -25.135 -10.500 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 O -0.245 6.245 4 C 0.108 3.892 5 C -0.235 4.235 6 C -0.059 4.059 7 C -0.215 4.215 8 C 0.112 3.888 9 F -0.123 7.123 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.314 5.314 13 C -0.056 4.056 14 C -0.128 4.128 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.201 1.201 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.180 0.820 30 H 0.191 0.809 31 H 0.172 0.828 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.009 0.991 40 H 0.010 0.990 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.489 -24.426 -10.477 28.955 hybrid contribution -1.168 0.625 0.372 1.376 sum 10.321 -23.800 -10.105 27.840 Atomic orbital electron populations 1.21829 0.92324 1.04184 1.02741 1.23128 0.96313 0.80271 1.03002 1.86100 1.18456 1.31965 1.88023 1.18621 0.83325 0.92708 0.94546 1.21619 0.94386 0.98626 1.08835 1.21214 0.94616 0.96903 0.93178 1.21352 1.01088 0.91498 1.07539 1.17524 0.90759 0.79942 1.00582 1.91479 1.86916 1.40235 1.93631 1.19094 0.92889 0.93839 1.11858 1.20466 0.96758 0.94261 0.90174 1.60560 1.48926 1.08931 1.13012 1.21844 0.93556 0.92906 0.97270 1.21363 0.98870 0.97808 0.94789 1.18967 0.93584 0.92893 0.95734 1.21713 1.28911 1.13911 0.93565 0.92264 1.26026 0.95552 0.96153 1.02281 1.70111 1.33276 1.20257 1.33805 0.85348 0.78084 0.78205 0.79093 1.18610 1.20266 1.20130 0.92309 0.87744 0.92729 0.90354 0.89990 0.81969 0.80890 0.82761 0.91203 0.93910 0.84028 0.92102 0.95763 0.93106 0.93034 0.99054 0.98962 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -7.24 9.18 -92.47 -0.85 -8.09 16 4 C 0.15 3.38 6.66 22.50 0.15 3.53 16 5 C -0.22 -3.21 9.04 22.37 0.20 -3.01 16 6 C -0.04 -0.53 10.04 22.25 0.22 -0.31 16 7 C -0.20 -3.52 10.02 22.33 0.22 -3.30 16 8 C 0.13 3.36 7.24 22.36 0.16 3.52 16 9 F -0.14 -4.28 16.48 44.97 0.74 -3.53 16 10 C -0.17 -4.64 5.41 -19.72 -0.11 -4.75 16 11 C 0.11 3.42 5.41 85.56 0.46 3.88 16 12 N -0.68 -23.37 6.49 -517.91 -3.36 -26.73 16 13 C 0.07 2.85 5.69 86.31 0.49 3.34 16 14 C -0.09 -4.08 5.41 30.60 0.17 -3.92 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.54 -32.43 9.11 25.60 0.23 -32.19 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 20 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.80 7.65 -2.39 -0.02 0.78 16 28 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 29 H 0.16 1.37 6.30 -2.91 -0.02 1.35 16 30 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.07 2.21 7.64 -2.39 -0.02 2.20 16 33 H 0.04 1.30 7.53 -2.38 -0.02 1.29 16 34 H 0.34 11.23 8.72 -89.70 -0.78 10.44 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -71.50 347.45 3.03 -68.47 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.23 Total: 12.06 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.95 Total: -31.50 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.08 Total: -85.08 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.85 Total: -8.09 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.74 Total: -3.53 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.50 3.03 -68.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873040814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.955 kcal (2) G-P(sol) polarization free energy of solvation -71.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds