Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47006 * 2 1 4 4 C 1.35905 * 117.00044 * 180.02562 * 3 2 1 5 5 C 1.38771 * 120.03985 * 359.95047 * 4 3 2 6 6 C 1.38129 * 119.99369 * 180.02562 * 5 4 3 7 7 C 1.38256 * 120.07991 * 0.02562 * 6 5 4 8 8 C 1.38474 * 120.08148 * 0.02562 * 7 6 5 9 9 F 1.35107 * 119.99500 * 179.97438 * 8 7 6 10 10 C 1.38376 * 120.01017 * 359.97350 * 8 7 6 11 11 C 1.50700 * 120.04497 * 179.72412 * 10 8 7 12 12 N 1.46905 * 109.46678 * 90.00168 * 11 10 8 13 13 C 1.46896 * 111.00000 * 66.05366 * 12 11 10 14 14 C 1.52999 * 109.47346 * 66.55534 * 13 12 11 15 15 C 1.46901 * 110.99661 * 190.00286 * 12 11 10 16 16 C 1.50704 * 109.47037 * 172.52591 * 15 12 11 17 17 H 1.07992 * 119.99766 * 354.78311 * 16 15 12 18 18 C 1.37879 * 119.99804 * 174.78427 * 16 15 12 19 19 N 1.31518 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47202 * 59.99359 * 20 18 16 22 22 H 1.48495 * 109.47203 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46802 * 299.99995 * 20 18 16 24 24 H 1.09007 * 109.47187 * 300.00074 * 1 2 3 25 25 H 1.08995 * 109.47168 * 60.00013 * 1 2 3 26 26 H 1.09006 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47271 * 239.99722 * 2 1 3 28 28 H 1.08995 * 109.47168 * 119.99986 * 2 1 3 29 29 H 1.08004 * 120.00143 * 0.05336 * 5 4 3 30 30 H 1.08002 * 119.96007 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.95806 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47658 * 210.00149 * 11 10 8 33 33 H 1.09001 * 109.46988 * 330.00518 * 11 10 8 34 34 H 1.08996 * 109.46995 * 186.55875 * 13 12 11 35 35 H 1.09003 * 109.47161 * 306.55673 * 13 12 11 36 36 H 1.09009 * 109.47012 * 65.70012 * 14 13 12 37 37 H 1.09002 * 109.47119 * 185.69457 * 14 13 12 38 38 H 1.08993 * 109.47304 * 305.70371 * 14 13 12 39 39 H 1.09000 * 109.47337 * 292.52803 * 15 12 11 40 40 H 1.09007 * 109.47165 * 52.52558 * 15 12 11 41 41 H 0.96998 * 119.99704 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1998 0.4255 0.0000 6 6 5.5690 0.6076 0.0000 7 6 6.0982 1.8849 0.0000 8 6 5.2568 2.9847 0.0005 9 9 5.7758 4.2321 0.0010 10 6 3.8846 2.8064 0.0005 11 6 2.9682 4.0028 0.0074 12 7 2.6696 4.3986 -1.3754 13 6 1.8865 3.3627 -2.0621 14 6 0.5026 3.2586 -1.4180 15 6 1.9777 5.6939 -1.4143 16 6 1.8519 6.1534 -2.8441 17 1 2.3193 5.5875 -3.6362 18 6 1.1400 7.2964 -3.1407 19 7 0.5703 7.9853 -2.1760 20 14 0.9834 7.8656 -4.9130 21 1 0.3162 6.8089 -5.7152 22 1 0.1745 9.1098 -4.9636 23 1 2.3348 8.1301 -5.4691 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 3.7877 -0.5729 -0.0001 30 1 6.2270 -0.2488 0.0008 31 1 7.1690 2.0250 0.0004 32 1 2.0411 3.7475 0.5205 33 1 3.4543 4.8297 0.5252 34 1 1.7787 3.6264 -3.1142 35 1 2.3992 2.4045 -1.9784 36 1 -0.0487 4.1831 -1.5901 37 1 -0.0416 2.4236 -1.8593 38 1 0.6122 3.0951 -0.3460 39 1 0.9845 5.5886 -0.9778 40 1 2.5485 6.4280 -0.8456 41 1 0.0692 8.7891 -2.3848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876564671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -54.502844 kcal Electronic energy + Delta-G solvation = -23055.838279 eV Core-core repulsion = 19657.773255 eV Total energy + Delta-G solvation = -3398.065024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.56069 -40.28297 -37.39551 -36.83188 -32.76532 -32.09016 -31.05648 -29.48633 -29.11319 -26.98903 -24.71413 -23.95306 -23.02195 -21.87254 -21.23583 -19.23170 -18.21666 -16.76034 -16.38788 -16.14394 -15.86158 -15.54822 -15.25479 -14.73436 -14.54428 -14.34552 -13.93542 -13.52982 -13.13133 -12.87435 -12.66581 -12.57549 -12.36016 -11.97558 -11.73150 -11.65356 -11.55540 -11.18238 -10.97215 -10.83832 -10.78287 -10.72664 -10.55030 -10.37625 -9.86396 -9.62866 -9.13219 -8.53702 -8.34960 -8.15556 -7.02665 -5.94627 -3.94953 1.26434 1.38987 3.12380 3.38272 3.41826 3.45355 3.66724 4.49548 4.53087 4.72239 4.82310 4.91130 4.99007 5.04052 5.12656 5.26057 5.33658 5.40629 5.43833 5.62654 5.70488 5.89983 5.94044 6.00546 6.06699 6.20710 6.24172 6.31424 6.34959 6.41001 6.51770 6.72285 6.87809 6.90629 7.16536 7.41927 7.44624 7.55596 7.89716 8.20110 8.33317 8.66684 9.12948 9.68487 11.16129 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.005594 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.187517 B = 5003.904987 C = 6093.004589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.296 6.296 4 C 0.163 3.837 5 C -0.226 4.226 6 C -0.061 4.061 7 C -0.197 4.197 8 C 0.155 3.845 9 F -0.126 7.126 10 C -0.131 4.131 11 C 0.095 3.905 12 N -0.529 5.529 13 C 0.069 3.931 14 C -0.176 4.176 15 C 0.190 3.810 16 C -0.501 4.501 17 H 0.061 0.939 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.004 0.996 40 H 0.024 0.976 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -18.400 6.491 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.209 6.209 4 C 0.116 3.884 5 C -0.245 4.245 6 C -0.079 4.079 7 C -0.216 4.216 8 C 0.135 3.865 9 F -0.104 7.104 10 C -0.133 4.133 11 C -0.033 4.033 12 N -0.252 5.252 13 C -0.060 4.060 14 C -0.234 4.234 15 C 0.065 3.935 16 C -0.540 4.540 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.042 0.958 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.888 -17.963 6.269 19.643 hybrid contribution -0.687 0.264 -0.547 0.917 sum 4.200 -17.699 5.722 19.069 Atomic orbital electron populations 1.21811 0.92723 1.02492 1.04030 1.22767 0.96021 0.82286 1.01023 1.86286 1.18166 1.28551 1.87860 1.18455 0.82896 0.92585 0.94459 1.21178 0.94264 0.97927 1.11141 1.20629 0.94296 0.96282 0.96730 1.20980 1.00078 0.91734 1.08855 1.17169 0.90461 0.79710 0.99180 1.91531 1.86694 1.38959 1.93258 1.19297 0.92896 0.94151 1.06998 1.20783 0.96199 0.93106 0.93222 1.62425 1.47118 1.04483 1.11206 1.21878 0.91214 0.93781 0.99089 1.22308 0.99333 1.01026 1.00756 1.19768 0.92180 0.83924 0.97620 1.21105 1.31552 1.08711 0.92654 0.92089 1.24962 0.95734 0.96637 0.97214 1.69954 1.35082 1.17271 1.31659 0.86602 0.78070 0.77849 0.85115 1.20381 1.21434 1.20227 0.91547 0.91003 0.90725 0.92111 0.92343 0.85348 0.85285 0.84990 0.93522 0.90689 0.91006 0.93264 0.91899 0.94297 0.92735 0.97861 0.95839 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.05 0.54 5.46 37.16 0.20 0.74 16 3 O -0.30 -4.15 5.46 -19.44 -0.11 -4.26 16 4 C 0.16 2.39 5.41 -39.23 -0.21 2.18 16 5 C -0.23 -2.67 9.04 -39.42 -0.36 -3.03 16 6 C -0.06 -0.68 10.04 -39.61 -0.40 -1.07 16 7 C -0.20 -2.56 10.02 -39.49 -0.40 -2.96 16 8 C 0.15 2.54 7.24 -39.44 -0.29 2.25 16 9 F -0.13 -2.29 16.48 2.25 0.04 -2.25 16 10 C -0.13 -2.25 4.90 -104.41 -0.51 -2.76 16 11 C 0.09 1.88 4.62 -4.97 -0.02 1.86 16 12 N -0.53 -12.07 4.71 -237.51 -1.12 -13.19 16 13 C 0.07 1.43 5.24 -3.83 -0.02 1.41 16 14 C -0.18 -3.38 8.19 37.16 0.30 -3.08 16 15 C 0.19 5.09 4.37 -4.97 -0.02 5.07 16 16 C -0.50 -14.43 8.42 -34.44 -0.29 -14.72 16 17 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.74 7.26 -51.93 -0.38 0.36 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.05 0.92 5.61 -51.93 -0.29 0.63 16 33 H 0.07 1.53 7.47 -51.93 -0.39 1.14 16 34 H 0.07 1.62 6.87 -51.93 -0.36 1.26 16 35 H 0.05 0.94 5.30 -51.93 -0.28 0.67 16 36 H 0.06 1.41 6.62 -51.92 -0.34 1.06 16 37 H 0.04 0.64 7.26 -51.93 -0.38 0.27 16 38 H 0.05 1.01 4.90 -51.93 -0.25 0.76 16 39 H 0.00 0.10 6.19 -51.93 -0.32 -0.22 16 40 H 0.02 0.68 7.98 -51.92 -0.41 0.27 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -31.43 324.41 -8.03 -39.47 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.73 Total: -1.74 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.72 Total: -13.61 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.38 Total: -39.62 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.11 Total: -4.26 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.43 -8.03 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876564671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.037 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds