Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46561 * 2 1 4 4 C 1.35904 * 116.99727 * 180.02562 * 3 2 1 5 5 C 1.38703 * 120.04223 * 359.97438 * 4 3 2 6 6 C 1.38344 * 119.91875 * 180.02562 * 5 4 3 7 7 F 1.35101 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38516 * 120.00713 * 359.72466 * 6 5 4 9 9 C 1.38216 * 120.08119 * 0.54823 * 8 6 5 10 10 C 1.50699 * 119.95837 * 179.72815 * 9 8 6 11 11 N 1.46897 * 109.46829 * 269.72401 * 10 9 8 12 12 C 1.46898 * 111.00371 * 293.95317 * 11 10 9 13 13 C 1.52995 * 109.47159 * 299.08539 * 12 11 10 14 14 C 1.46908 * 110.99739 * 169.99915 * 11 10 9 15 15 C 1.50699 * 109.47082 * 198.88509 * 14 11 10 16 16 H 1.08007 * 120.00063 * 356.79066 * 15 14 11 17 17 C 1.37871 * 119.99876 * 176.79392 * 15 14 11 18 18 N 1.31521 * 120.00206 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99977 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47199 * 59.99920 * 19 17 15 21 21 H 1.48501 * 109.47388 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47085 * 299.99807 * 19 17 15 23 23 C 1.38178 * 120.07839 * 359.45254 * 9 8 6 24 24 H 1.08999 * 109.47073 * 299.99534 * 1 2 3 25 25 H 1.08999 * 109.47357 * 60.00156 * 1 2 3 26 26 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47353 * 240.00319 * 2 1 3 28 28 H 1.09006 * 109.47350 * 119.99465 * 2 1 3 29 29 H 1.08006 * 120.04068 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.95856 * 180.27616 * 8 6 5 31 31 H 1.08996 * 109.47068 * 149.72590 * 10 9 8 32 32 H 1.08998 * 109.47045 * 29.72987 * 10 9 8 33 33 H 1.08997 * 109.46789 * 179.08222 * 12 11 10 34 34 H 1.09007 * 109.46807 * 59.08365 * 12 11 10 35 35 H 1.08997 * 109.47254 * 177.79571 * 13 12 11 36 36 H 1.09001 * 109.47174 * 297.79552 * 13 12 11 37 37 H 1.09006 * 109.47201 * 57.79481 * 13 12 11 38 38 H 1.09003 * 109.46911 * 318.88415 * 14 11 10 39 39 H 1.09000 * 109.46689 * 78.88487 * 14 11 10 40 40 H 0.97002 * 119.99899 * 180.02562 * 18 17 15 41 41 H 1.07992 * 119.99850 * 180.25060 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1994 0.4262 -0.0005 6 6 5.5705 0.6105 -0.0005 7 9 6.3958 -0.4592 0.0000 8 6 6.0972 1.8916 -0.0063 9 6 5.2546 2.9871 -0.0007 10 6 5.8307 4.3797 -0.0008 11 7 6.0179 4.8322 1.3841 12 6 4.7262 4.9885 2.0661 13 6 3.8877 6.0392 1.3357 14 6 6.7919 6.0800 1.4302 15 6 7.3579 6.2693 2.8139 16 1 7.1198 5.5634 3.5960 17 6 8.1797 7.3435 3.0816 18 7 8.4692 8.2033 2.1294 19 14 8.8807 7.5785 4.7970 20 1 9.7038 6.3975 5.1615 21 1 9.7262 8.7990 4.8234 22 1 7.7687 7.7262 5.7702 23 6 3.8846 2.8071 -0.0006 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7880 -0.5725 0.0003 30 1 7.1677 2.0345 -0.0109 31 1 5.1473 5.0556 -0.5146 32 1 6.7919 4.3751 -0.5147 33 1 4.8947 5.3086 3.0943 34 1 4.1968 4.0356 2.0643 35 1 2.9144 6.1270 1.8183 36 1 4.3991 7.0012 1.3714 37 1 3.7523 5.7381 0.2968 38 1 7.6069 6.0288 0.7081 39 1 6.1418 6.9200 1.1854 40 1 9.0477 8.9588 2.3177 41 1 3.2274 3.6641 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876564832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -59.550024 kcal Electronic energy + Delta-G solvation = -21976.373199 eV Core-core repulsion = 18578.089312 eV Total energy + Delta-G solvation = -3398.283887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.83879 -40.22311 -38.26559 -36.47069 -32.70739 -32.17381 -31.25852 -29.77988 -29.13497 -27.21466 -25.04380 -23.72357 -22.96961 -22.54004 -21.16345 -19.45450 -17.95413 -16.77432 -16.36238 -16.20715 -16.13555 -15.94890 -15.48071 -14.99897 -14.81215 -14.38292 -14.04553 -13.57997 -13.38739 -13.11905 -12.96897 -12.79530 -12.40990 -11.93087 -11.85048 -11.78246 -11.46396 -11.38960 -11.16649 -11.05353 -11.00859 -10.69686 -10.66716 -10.46591 -10.08916 -9.74353 -9.26767 -8.71771 -8.39189 -8.19609 -7.21388 -6.00441 -4.01079 1.20010 1.37772 2.99298 3.35496 3.39285 3.42657 3.63649 4.25473 4.45231 4.63256 4.64269 4.79943 4.93029 5.01168 5.08596 5.09940 5.22842 5.35715 5.41062 5.49475 5.58411 5.69408 5.73801 5.80051 5.95654 6.01197 6.09293 6.11633 6.19775 6.26722 6.43922 6.63533 6.68490 6.77123 6.88331 7.25380 7.30583 7.40078 7.82379 8.10378 8.20411 8.54208 9.05945 9.62592 11.10013 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003887 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.452659 B = 7201.085223 C = 7834.376246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.312 6.312 4 C 0.154 3.846 5 C -0.256 4.256 6 C 0.134 3.866 7 F -0.141 7.141 8 C -0.168 4.168 9 C 0.008 3.992 10 C 0.082 3.918 11 N -0.526 5.526 12 C 0.055 3.945 13 C -0.191 4.191 14 C 0.188 3.812 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.029 0.971 39 H 0.002 0.998 40 H 0.261 0.739 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -14.908 -6.319 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.225 6.225 4 C 0.109 3.891 5 C -0.275 4.275 6 C 0.115 3.885 7 F -0.119 7.119 8 C -0.188 4.188 9 C 0.007 3.993 10 C -0.046 4.046 11 N -0.250 5.250 12 C -0.074 4.074 13 C -0.250 4.250 14 C 0.064 3.936 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.176 4.176 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.953 -14.987 -6.097 20.726 hybrid contribution 0.225 0.334 0.512 0.651 sum -12.728 -14.654 -5.585 20.197 Atomic orbital electron populations 1.21774 0.92694 1.02782 1.03636 1.22799 0.95904 0.82082 1.01483 1.86102 1.18707 1.29168 1.88567 1.18568 0.81991 0.93283 0.95295 1.20997 0.92561 0.99359 1.14613 1.17342 0.87056 0.83436 1.00707 1.91484 1.71929 1.54702 1.93792 1.20989 1.01583 0.89977 1.06239 1.19610 0.91480 0.95858 0.92324 1.21158 1.00211 0.90014 0.93191 1.62407 1.16204 1.35373 1.11003 1.22058 0.89176 0.96778 0.99342 1.22433 1.00225 1.02081 1.00275 1.19844 0.91972 0.83769 0.98062 1.21110 1.28446 1.08883 0.95667 0.91990 1.24968 0.96518 0.95931 0.97209 1.69945 1.37395 1.14288 1.32429 0.86572 0.79025 0.77373 0.84505 1.20198 1.21434 1.20319 1.20443 0.94932 0.94786 1.07453 0.91400 0.91486 0.90439 0.92030 0.91939 0.84809 0.84290 0.93735 0.89927 0.90258 0.92400 0.93245 0.91429 0.93377 0.95257 0.98055 0.92922 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.45 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.82 10.14 -19.44 -0.20 -4.02 16 4 C 0.15 2.08 6.69 -39.23 -0.26 1.82 16 5 C -0.26 -3.30 9.01 -39.37 -0.35 -3.66 16 6 C 0.13 1.92 7.30 -39.44 -0.29 1.64 16 7 F -0.14 -2.02 17.27 2.25 0.04 -1.99 16 8 C -0.17 -2.57 9.68 -39.49 -0.38 -2.95 16 9 C 0.01 0.13 4.88 -104.65 -0.51 -0.38 16 10 C 0.08 1.43 4.88 -4.98 -0.02 1.41 16 11 N -0.53 -11.00 4.63 -237.52 -1.10 -12.10 16 12 C 0.05 1.04 5.54 -3.83 -0.02 1.02 16 13 C -0.19 -3.27 9.08 37.15 0.34 -2.93 16 14 C 0.19 4.73 4.63 -4.97 -0.02 4.71 16 15 C -0.50 -13.95 8.66 -34.44 -0.30 -14.25 16 16 H 0.06 1.72 7.60 -52.48 -0.40 1.32 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.16 -2.27 7.88 -39.42 -0.31 -2.58 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.42 6.30 -52.48 -0.33 1.08 16 30 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.04 0.74 5.92 -51.93 -0.31 0.43 16 32 H 0.08 1.43 7.78 -51.93 -0.40 1.03 16 33 H 0.08 1.64 7.38 -51.93 -0.38 1.26 16 34 H 0.06 1.01 6.10 -51.93 -0.32 0.69 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 37 H 0.05 0.75 5.35 -51.93 -0.28 0.47 16 38 H 0.03 0.79 7.75 -51.93 -0.40 0.39 16 39 H 0.00 0.05 5.84 -51.93 -0.30 -0.26 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.13 1.88 6.95 -52.49 -0.36 1.51 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -29.71 333.13 -8.03 -37.75 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.86 Total: -0.87 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.65 Total: -14.69 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.36 Total: -37.86 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.71 -8.03 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876564832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.805 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds