Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46561 * 2 1 4 4 C 1.35904 * 116.99727 * 180.02562 * 3 2 1 5 5 C 1.38703 * 120.04223 * 359.97438 * 4 3 2 6 6 C 1.38344 * 119.91875 * 180.02562 * 5 4 3 7 7 F 1.35101 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38516 * 120.00713 * 359.72466 * 6 5 4 9 9 C 1.38216 * 120.08119 * 0.54823 * 8 6 5 10 10 C 1.50699 * 119.95837 * 179.72815 * 9 8 6 11 11 N 1.46897 * 109.46829 * 269.72401 * 10 9 8 12 12 C 1.46898 * 111.00371 * 293.95317 * 11 10 9 13 13 C 1.52995 * 109.47159 * 299.08539 * 12 11 10 14 14 C 1.46908 * 110.99739 * 169.99915 * 11 10 9 15 15 C 1.50699 * 109.47082 * 198.88509 * 14 11 10 16 16 H 1.08007 * 120.00063 * 356.79066 * 15 14 11 17 17 C 1.37871 * 119.99876 * 176.79392 * 15 14 11 18 18 N 1.31521 * 120.00206 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99977 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47199 * 59.99920 * 19 17 15 21 21 H 1.48501 * 109.47388 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47085 * 299.99807 * 19 17 15 23 23 C 1.38178 * 120.07839 * 359.45254 * 9 8 6 24 24 H 1.08999 * 109.47073 * 299.99534 * 1 2 3 25 25 H 1.08999 * 109.47357 * 60.00156 * 1 2 3 26 26 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47353 * 240.00319 * 2 1 3 28 28 H 1.09006 * 109.47350 * 119.99465 * 2 1 3 29 29 H 1.08006 * 120.04068 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.95856 * 180.27616 * 8 6 5 31 31 H 1.08996 * 109.47068 * 149.72590 * 10 9 8 32 32 H 1.08998 * 109.47045 * 29.72987 * 10 9 8 33 33 H 1.08997 * 109.46789 * 179.08222 * 12 11 10 34 34 H 1.09007 * 109.46807 * 59.08365 * 12 11 10 35 35 H 1.08997 * 109.47254 * 177.79571 * 13 12 11 36 36 H 1.09001 * 109.47174 * 297.79552 * 13 12 11 37 37 H 1.09006 * 109.47201 * 57.79481 * 13 12 11 38 38 H 1.09003 * 109.46911 * 318.88415 * 14 11 10 39 39 H 1.09000 * 109.46689 * 78.88487 * 14 11 10 40 40 H 0.97002 * 119.99899 * 180.02562 * 18 17 15 41 41 H 1.07992 * 119.99850 * 180.25060 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1994 0.4262 -0.0005 6 6 5.5705 0.6105 -0.0005 7 9 6.3958 -0.4592 0.0000 8 6 6.0972 1.8916 -0.0063 9 6 5.2546 2.9871 -0.0007 10 6 5.8307 4.3797 -0.0008 11 7 6.0179 4.8322 1.3841 12 6 4.7262 4.9885 2.0661 13 6 3.8877 6.0392 1.3357 14 6 6.7919 6.0800 1.4302 15 6 7.3579 6.2693 2.8139 16 1 7.1198 5.5634 3.5960 17 6 8.1797 7.3435 3.0816 18 7 8.4692 8.2033 2.1294 19 14 8.8807 7.5785 4.7970 20 1 9.7038 6.3975 5.1615 21 1 9.7262 8.7990 4.8234 22 1 7.7687 7.7262 5.7702 23 6 3.8846 2.8071 -0.0006 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7880 -0.5725 0.0003 30 1 7.1677 2.0345 -0.0109 31 1 5.1473 5.0556 -0.5146 32 1 6.7919 4.3751 -0.5147 33 1 4.8947 5.3086 3.0943 34 1 4.1968 4.0356 2.0643 35 1 2.9144 6.1270 1.8183 36 1 4.3991 7.0012 1.3714 37 1 3.7523 5.7381 0.2968 38 1 7.6069 6.0288 0.7081 39 1 6.1418 6.9200 1.1854 40 1 9.0477 8.9588 2.3177 41 1 3.2274 3.6641 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876564832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -76.754287 kcal Electronic energy + Delta-G solvation = -21977.119232 eV Core-core repulsion = 18578.089312 eV Total energy + Delta-G solvation = -3399.029919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.96279 -41.26156 -39.53140 -37.82055 -34.76783 -32.95049 -32.47830 -31.20107 -30.34067 -28.94707 -26.53597 -25.01190 -24.36260 -23.64107 -22.35504 -20.94993 -19.04459 -18.30822 -17.85157 -17.28117 -17.19777 -17.08297 -16.78519 -16.52191 -16.40053 -15.80545 -15.33790 -15.00926 -14.58996 -14.14415 -14.09381 -14.02711 -13.48244 -13.37390 -13.14189 -13.03897 -12.90506 -12.67806 -12.64844 -12.46328 -12.38907 -12.31789 -12.08783 -11.79549 -11.57829 -11.47651 -11.29236 -10.55876 -9.85609 -9.27095 -8.90516 -8.15887 -6.24823 0.07271 0.26253 1.42181 1.44773 1.52563 2.13121 2.41099 2.51152 3.15107 3.15728 3.48453 3.65804 3.91854 3.95463 4.07447 4.13227 4.18205 4.27743 4.32578 4.39492 4.40299 4.56088 4.60514 4.72114 4.84895 4.96237 4.96794 4.97802 4.99531 5.06711 5.12810 5.22333 5.27711 5.36349 5.48980 5.54507 5.66929 5.70742 6.11267 6.35048 6.42285 6.64357 6.90013 7.43758 8.93739 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003887 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.452659 B = 7201.085223 C = 7834.376246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.321 6.321 4 C 0.159 3.841 5 C -0.244 4.244 6 C 0.128 3.872 7 F -0.142 7.142 8 C -0.181 4.181 9 C -0.001 4.001 10 C 0.086 3.914 11 N -0.537 5.537 12 C 0.058 3.942 13 C -0.182 4.182 14 C 0.203 3.797 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.003 0.997 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 -16.647 -5.860 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.113 3.887 5 C -0.264 4.264 6 C 0.109 3.891 7 F -0.120 7.120 8 C -0.201 4.201 9 C -0.002 4.002 10 C -0.041 4.041 11 N -0.261 5.261 12 C -0.070 4.070 13 C -0.240 4.240 14 C 0.078 3.922 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.195 4.195 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.021 0.979 39 H 0.003 0.997 40 H 0.072 0.928 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.627 -16.750 -5.642 22.943 hybrid contribution 0.639 0.767 0.315 1.046 sum -13.988 -15.984 -5.327 21.898 Atomic orbital electron populations 1.21810 0.91236 1.04256 1.03299 1.23164 0.97125 0.80525 1.02572 1.86113 1.17653 1.31597 1.88158 1.18547 0.82849 0.92905 0.94445 1.21230 0.91709 1.00608 1.12820 1.17386 0.87707 0.82979 1.01024 1.91482 1.72123 1.54573 1.93841 1.20998 1.01424 0.90634 1.07047 1.19322 0.92132 0.94538 0.94172 1.21100 1.00373 0.91504 0.91156 1.62258 1.17363 1.32938 1.13517 1.22033 0.88660 0.98277 0.98072 1.22317 1.00655 0.99729 1.01301 1.19475 0.91350 0.85237 0.96178 1.21428 1.28680 1.08885 0.96674 0.92467 1.25821 0.96846 0.95592 1.01211 1.70065 1.38087 1.14829 1.34501 0.85522 0.78449 0.77434 0.79725 1.19637 1.20883 1.19367 1.20473 0.94348 0.95750 1.07334 0.91896 0.91677 0.88062 0.90685 0.91018 0.82131 0.84920 0.92898 0.90656 0.92542 0.90380 0.90712 0.94416 0.91835 0.97922 0.99739 0.92787 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.32 -6.99 10.14 -92.47 -0.94 -7.93 16 4 C 0.16 3.90 6.69 22.50 0.15 4.05 16 5 C -0.24 -5.67 9.01 22.41 0.20 -5.47 16 6 C 0.13 3.50 7.30 22.36 0.16 3.66 16 7 F -0.14 -3.88 17.27 44.97 0.78 -3.10 16 8 C -0.18 -5.47 9.68 22.33 0.22 -5.25 16 9 C 0.00 -0.02 4.88 -19.88 -0.10 -0.12 16 10 C 0.09 3.04 4.88 85.56 0.42 3.45 16 11 N -0.54 -22.89 4.63 -905.37 -4.19 -27.08 16 12 C 0.06 2.17 5.54 86.30 0.48 2.65 16 13 C -0.18 -6.10 9.08 71.98 0.65 -5.44 16 14 C 0.20 10.63 4.63 85.55 0.40 11.03 16 15 C -0.52 -29.47 8.66 25.60 0.22 -29.25 16 16 H 0.06 3.24 7.60 -2.91 -0.02 3.21 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 19 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.16 -4.36 7.88 22.37 0.18 -4.19 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 28 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 29 H 0.16 2.80 6.30 -2.91 -0.02 2.78 16 30 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.05 1.76 5.92 -2.39 -0.01 1.75 16 32 H 0.07 2.72 7.78 -2.39 -0.02 2.70 16 33 H 0.06 2.37 7.38 -2.39 -0.02 2.35 16 34 H 0.08 2.63 6.10 -2.38 -0.01 2.61 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.49 6.30 -2.39 -0.02 1.47 16 37 H 0.06 1.92 5.35 -2.38 -0.01 1.90 16 38 H 0.00 0.15 7.75 -2.39 -0.02 0.13 16 39 H -0.02 -0.82 5.84 -2.39 -0.01 -0.84 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.14 3.62 6.95 -2.91 -0.02 3.60 16 Total: -1.00 -64.18 333.13 3.56 -60.61 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.03 Total: 10.62 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.57 Total: -24.07 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -3.90 Total: -82.91 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.94 Total: -7.93 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.18 3.56 -60.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876564832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.140 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds