Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47148 * 2 1 4 4 C 1.36061 * 116.99745 * 180.02562 * 3 2 1 5 5 C 1.38630 * 119.99023 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.04140 * 179.74413 * 5 4 3 7 7 C 1.38864 * 120.01835 * 0.50673 * 6 5 4 8 8 N 1.39928 * 120.00730 * 179.74355 * 7 6 5 9 9 C 1.46496 * 120.00483 * 359.72416 * 8 7 6 10 10 C 1.52997 * 109.47484 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 55.00066 * 10 9 8 12 12 C 1.53002 * 109.46817 * 295.00296 * 10 9 8 13 13 C 1.53000 * 109.47060 * 175.00385 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99876 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47220 * 60.00221 * 18 16 14 20 20 H 1.48500 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47296 * 300.00052 * 18 16 14 22 22 C 1.38841 * 119.97544 * 359.47082 * 7 6 5 23 23 C 1.38290 * 119.96022 * 0.27322 * 22 7 6 24 24 F 1.35103 * 120.01012 * 180.02562 * 23 22 7 25 25 H 1.09004 * 109.47139 * 59.99962 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46809 * 300.00210 * 1 2 3 28 28 H 1.09005 * 109.46809 * 239.99790 * 2 1 3 29 29 H 1.09004 * 109.47139 * 120.00038 * 2 1 3 30 30 H 1.08000 * 119.97844 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.98677 * 180.25462 * 6 5 4 32 32 H 0.97005 * 119.99933 * 179.72924 * 8 7 6 33 33 H 1.09000 * 109.46667 * 60.00017 * 9 8 7 34 34 H 1.09008 * 109.47241 * 300.00374 * 9 8 7 35 35 H 1.08996 * 109.47407 * 60.00219 * 12 10 9 36 36 H 1.09000 * 109.46986 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47075 * 299.99262 * 12 10 9 38 38 H 1.09002 * 109.47069 * 304.99600 * 13 10 9 39 39 H 1.08991 * 109.47625 * 64.99919 * 13 10 9 40 40 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.02011 * 180.25398 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3552 1.5254 -0.0005 5 6 4.1995 0.4259 -0.0016 6 6 5.5692 0.6056 -0.0075 7 6 6.1016 1.8881 -0.0017 8 7 7.4891 2.0698 -0.0023 9 6 8.3802 0.9071 -0.0028 10 6 9.8354 1.3797 -0.0027 11 1 9.9989 2.0522 0.8394 12 6 10.1320 2.1176 -1.3098 13 6 10.7643 0.1704 0.1224 14 6 12.1900 0.6429 0.2460 15 1 12.4114 1.6999 0.2367 16 6 13.2117 -0.2743 0.3719 17 7 12.9421 -1.5615 0.3847 18 14 14.9788 0.3114 0.5259 19 1 15.1136 1.1665 1.7325 20 1 15.8805 -0.8623 0.6471 21 1 15.3473 1.0955 -0.6802 22 6 5.2568 2.9899 -0.0011 23 6 3.8858 2.8089 -0.0006 24 9 3.0628 3.8804 -0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7861 -0.5719 -0.0024 31 1 6.2261 -0.2517 -0.0125 32 1 7.8609 2.9658 -0.0022 33 1 8.1930 0.3063 -0.8928 34 1 8.1937 0.3059 0.8872 35 1 9.4702 2.9791 -1.3989 36 1 11.1685 2.4547 -1.3095 37 1 9.9685 1.4451 -2.1519 38 1 10.4942 -0.4052 1.0077 39 1 10.6651 -0.4572 -0.7632 40 1 13.6609 -2.2067 0.4730 41 1 5.6702 3.9877 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876824115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -79.252288 kcal Electronic energy + Delta-G solvation = -21139.397383 eV Core-core repulsion = 17740.259142 eV Total energy + Delta-G solvation = -3399.138241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.75138 -40.03359 -38.33307 -36.29764 -33.76017 -32.19869 -31.63032 -30.67155 -28.26594 -26.86392 -25.71085 -24.31852 -23.12720 -21.95642 -21.35661 -19.39963 -18.43030 -17.37610 -16.86288 -16.38886 -16.26586 -15.52441 -15.32855 -14.93144 -14.69549 -14.50080 -14.24461 -14.01746 -13.29754 -13.06546 -12.93307 -12.83382 -12.62065 -12.41108 -12.06191 -11.85658 -11.82144 -11.55118 -11.10783 -11.04905 -10.95870 -10.83019 -10.45631 -10.40065 -9.94415 -9.44325 -9.34728 -9.11212 -8.82051 -8.41047 -7.09591 -6.05807 -4.07858 1.14159 1.50008 3.05902 3.29273 3.34330 3.36043 3.56372 3.67576 4.32693 4.41369 4.63515 4.68579 4.82004 4.98769 5.09507 5.16994 5.28330 5.30152 5.45740 5.51164 5.52920 5.61961 5.66520 5.77345 5.85399 5.95448 6.12715 6.19672 6.25911 6.30968 6.36948 6.55425 6.78514 6.94696 6.98814 7.28080 7.46585 7.56692 7.70158 7.87120 7.92449 8.34684 8.97543 9.56124 11.05545 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.002718 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.266854 B =10300.741605 C =10943.834014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.026 3.974 5 C -0.128 4.128 6 C -0.171 4.171 7 C 0.223 3.777 8 N -0.737 5.737 9 C 0.125 3.875 10 C -0.096 4.096 11 H 0.063 0.937 12 C -0.133 4.133 13 C 0.030 3.970 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.206 4.206 23 C 0.118 3.882 24 F -0.136 7.136 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.400 0.600 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 3.927 -1.315 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.231 6.231 4 C -0.021 4.021 5 C -0.147 4.147 6 C -0.194 4.194 7 C 0.117 3.883 8 N -0.365 5.365 9 C 0.002 3.998 10 C -0.115 4.115 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.007 4.007 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.230 4.230 23 C 0.097 3.903 24 F -0.115 7.115 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.516 3.736 -1.304 20.894 hybrid contribution 1.180 0.465 0.100 1.273 sum -19.335 4.201 -1.204 19.823 Atomic orbital electron populations 1.21761 0.92944 1.02673 1.03453 1.22728 0.95697 0.82296 1.01264 1.86086 1.18149 1.28777 1.90090 1.18586 0.83223 0.92611 1.07682 1.20861 0.93294 0.97419 1.03152 1.20595 0.94574 0.96047 1.08138 1.17514 0.84535 0.92601 0.93686 1.45025 1.01357 1.09499 1.80623 1.21674 0.90125 0.87360 1.00667 1.21444 0.91843 1.00523 0.97679 0.91896 1.21729 1.01458 0.98480 0.97327 1.19077 0.92988 0.91306 0.97348 1.21146 0.91521 0.92803 1.50104 0.92597 1.25012 0.99130 0.94913 0.95376 1.69942 1.32551 1.00541 1.50406 0.86671 0.84638 0.78123 0.78648 1.20263 1.21306 1.20263 1.20288 0.90359 0.99345 1.12985 1.16566 0.87140 0.80741 1.05814 1.91469 1.71931 1.53974 1.94098 0.91604 0.90473 0.91604 0.92183 0.92172 0.84854 0.84867 0.76532 0.92458 0.92392 0.95058 0.91731 0.93433 0.96430 0.96288 0.92903 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -4.00 10.00 -19.93 -0.20 -4.20 16 4 C 0.03 0.34 6.69 -39.20 -0.26 0.08 16 5 C -0.13 -1.51 9.03 -39.47 -0.36 -1.87 16 6 C -0.17 -2.18 9.31 -39.38 -0.37 -2.55 16 7 C 0.22 2.98 6.65 -83.71 -0.56 2.42 16 8 N -0.74 -10.01 5.47 -58.60 -0.32 -10.33 16 9 C 0.13 1.95 4.30 -4.05 -0.02 1.93 16 10 C -0.10 -1.77 2.37 -90.62 -0.22 -1.99 16 11 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.13 -2.29 8.88 37.16 0.33 -1.96 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 14 C -0.52 -13.85 8.41 -34.44 -0.29 -14.13 16 15 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.21 -2.66 9.87 -39.34 -0.39 -3.04 16 23 C 0.12 1.63 7.31 -39.32 -0.29 1.35 16 24 F -0.14 -1.98 17.11 2.25 0.04 -1.94 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 30 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 31 H 0.13 1.63 6.73 -52.48 -0.35 1.28 16 32 H 0.40 4.99 7.67 -40.82 -0.31 4.68 16 33 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 34 H 0.06 0.92 7.96 -51.92 -0.41 0.51 16 35 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 36 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -29.55 341.64 -7.90 -37.45 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.24 Total: 0.78 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.05 Total: -17.63 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.42 Total: -35.69 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.55 -7.90 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876824115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.798 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds