Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47148 * 2 1 4 4 C 1.36061 * 116.99745 * 180.02562 * 3 2 1 5 5 C 1.38630 * 119.99023 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.04140 * 179.74413 * 5 4 3 7 7 C 1.38864 * 120.01835 * 0.50673 * 6 5 4 8 8 N 1.39928 * 120.00730 * 179.74355 * 7 6 5 9 9 C 1.46496 * 120.00483 * 359.72416 * 8 7 6 10 10 C 1.52997 * 109.47484 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 55.00066 * 10 9 8 12 12 C 1.53002 * 109.46817 * 295.00296 * 10 9 8 13 13 C 1.53000 * 109.47060 * 175.00385 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99876 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47220 * 60.00221 * 18 16 14 20 20 H 1.48500 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47296 * 300.00052 * 18 16 14 22 22 C 1.38841 * 119.97544 * 359.47082 * 7 6 5 23 23 C 1.38290 * 119.96022 * 0.27322 * 22 7 6 24 24 F 1.35103 * 120.01012 * 180.02562 * 23 22 7 25 25 H 1.09004 * 109.47139 * 59.99962 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46809 * 300.00210 * 1 2 3 28 28 H 1.09005 * 109.46809 * 239.99790 * 2 1 3 29 29 H 1.09004 * 109.47139 * 120.00038 * 2 1 3 30 30 H 1.08000 * 119.97844 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.98677 * 180.25462 * 6 5 4 32 32 H 0.97005 * 119.99933 * 179.72924 * 8 7 6 33 33 H 1.09000 * 109.46667 * 60.00017 * 9 8 7 34 34 H 1.09008 * 109.47241 * 300.00374 * 9 8 7 35 35 H 1.08996 * 109.47407 * 60.00219 * 12 10 9 36 36 H 1.09000 * 109.46986 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47075 * 299.99262 * 12 10 9 38 38 H 1.09002 * 109.47069 * 304.99600 * 13 10 9 39 39 H 1.08991 * 109.47625 * 64.99919 * 13 10 9 40 40 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.02011 * 180.25398 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3552 1.5254 -0.0005 5 6 4.1995 0.4259 -0.0016 6 6 5.5692 0.6056 -0.0075 7 6 6.1016 1.8881 -0.0017 8 7 7.4891 2.0698 -0.0023 9 6 8.3802 0.9071 -0.0028 10 6 9.8354 1.3797 -0.0027 11 1 9.9989 2.0522 0.8394 12 6 10.1320 2.1176 -1.3098 13 6 10.7643 0.1704 0.1224 14 6 12.1900 0.6429 0.2460 15 1 12.4114 1.6999 0.2367 16 6 13.2117 -0.2743 0.3719 17 7 12.9421 -1.5615 0.3847 18 14 14.9788 0.3114 0.5259 19 1 15.1136 1.1665 1.7325 20 1 15.8805 -0.8623 0.6471 21 1 15.3473 1.0955 -0.6802 22 6 5.2568 2.9899 -0.0011 23 6 3.8858 2.8089 -0.0006 24 9 3.0628 3.8804 -0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7861 -0.5719 -0.0024 31 1 6.2261 -0.2517 -0.0125 32 1 7.8609 2.9658 -0.0022 33 1 8.1930 0.3063 -0.8928 34 1 8.1937 0.3059 0.8872 35 1 9.4702 2.9791 -1.3989 36 1 11.1685 2.4547 -1.3095 37 1 9.9685 1.4451 -2.1519 38 1 10.4942 -0.4052 1.0077 39 1 10.6651 -0.4572 -0.7632 40 1 13.6609 -2.2067 0.4730 41 1 5.6702 3.9877 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876824115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -95.229403 kcal Electronic energy + Delta-G solvation = -21140.090202 eV Core-core repulsion = 17740.259142 eV Total energy + Delta-G solvation = -3399.831061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.81890 -40.98434 -39.36061 -37.64294 -35.27960 -33.81297 -32.44940 -31.67279 -29.56506 -28.49034 -27.03630 -25.14135 -24.81589 -22.89308 -22.43633 -20.88319 -19.37858 -18.57118 -18.40008 -17.65268 -17.24245 -16.69957 -16.45417 -16.27959 -15.99548 -15.85299 -15.45747 -14.89044 -14.54441 -14.37694 -14.15814 -13.85890 -13.67885 -13.59124 -13.35440 -13.05387 -12.96876 -12.77630 -12.65605 -12.59537 -12.25125 -12.08045 -11.85022 -11.79621 -11.53702 -11.15073 -11.02565 -10.52006 -10.44445 -9.83607 -8.16948 -8.13098 -6.25413 0.15084 0.49621 1.41928 1.43398 1.51010 2.22774 2.40290 2.49990 2.67968 3.17321 3.34276 3.76425 4.00917 4.09894 4.11461 4.19969 4.21000 4.27628 4.38116 4.41205 4.49309 4.61444 4.79383 4.84711 4.89160 4.95986 4.97031 4.99724 5.18633 5.23836 5.26062 5.30522 5.33630 5.48086 5.53469 5.59677 5.79332 5.88423 6.22315 6.32570 6.48071 6.84268 6.90770 7.42828 8.94722 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.002718 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.266854 B =10300.741605 C =10943.834014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.023 3.977 5 C -0.123 4.123 6 C -0.175 4.175 7 C 0.211 3.789 8 N -0.734 5.734 9 C 0.141 3.859 10 C -0.085 4.085 11 H 0.063 0.937 12 C -0.126 4.126 13 C 0.034 3.966 14 C -0.529 4.529 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.957 3.043 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.200 4.200 23 C 0.095 3.905 24 F -0.145 7.145 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.137 0.863 32 H 0.406 0.594 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.042 0.958 38 H -0.007 1.007 39 H -0.004 1.004 40 H 0.262 0.738 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.086 4.509 -1.449 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.251 6.251 4 C -0.024 4.024 5 C -0.142 4.142 6 C -0.198 4.198 7 C 0.106 3.894 8 N -0.364 5.364 9 C 0.016 3.984 10 C -0.104 4.104 11 H 0.081 0.919 12 C -0.184 4.184 13 C -0.004 4.004 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.224 4.224 23 C 0.075 3.925 24 F -0.123 7.123 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.155 0.845 32 H 0.242 0.758 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.011 0.989 39 H 0.014 0.986 40 H 0.071 0.929 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.077 4.341 -1.439 21.567 hybrid contribution 1.237 0.241 0.145 1.268 sum -19.840 4.582 -1.294 20.403 Atomic orbital electron populations 1.21799 0.91619 1.04143 1.03011 1.23065 0.96839 0.80785 1.02327 1.86081 1.17789 1.31259 1.89954 1.18778 0.83867 0.92740 1.07055 1.21083 0.92727 0.98295 1.02138 1.20782 0.95179 0.96071 1.07791 1.17581 0.84250 0.93038 0.94526 1.44761 1.01246 1.09029 1.81322 1.21310 0.88644 0.87876 1.00537 1.21201 0.92535 0.98152 0.98514 0.91867 1.21650 1.01139 0.99372 0.96211 1.18964 0.93479 0.92952 0.95011 1.21600 0.92932 0.93136 1.49091 0.91996 1.25899 1.03630 0.95032 0.95262 1.70075 1.33801 1.01742 1.51794 0.85615 0.79390 0.77680 0.79057 1.19375 1.21245 1.19313 1.20384 0.89970 0.99978 1.12055 1.16835 0.87557 0.80991 1.07147 1.91441 1.72193 1.54381 1.94312 0.92033 0.88025 0.92066 0.91031 0.91077 0.82342 0.84487 0.75767 0.92437 0.92875 0.91732 0.93483 0.93896 0.98897 0.98595 0.92949 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.04 0.68 5.46 71.98 0.39 1.08 16 3 O -0.34 -8.10 10.00 -94.24 -0.94 -9.04 16 4 C 0.02 0.57 6.69 22.52 0.15 0.72 16 5 C -0.12 -2.69 9.03 22.34 0.20 -2.49 16 6 C -0.18 -4.22 9.31 22.40 0.21 -4.01 16 7 C 0.21 5.32 6.65 38.14 0.25 5.57 16 8 N -0.73 -18.68 5.47 -339.30 -1.86 -20.53 16 9 C 0.14 4.25 4.30 86.38 0.37 4.62 16 10 C -0.09 -3.10 2.37 -10.79 -0.03 -3.12 16 11 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.13 -4.20 8.88 71.98 0.64 -3.56 16 13 C 0.03 1.64 4.45 29.85 0.13 1.77 16 14 C -0.53 -28.48 8.41 25.60 0.22 -28.26 16 15 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 18 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C -0.20 -4.89 9.87 22.43 0.22 -4.67 16 23 C 0.10 2.55 7.31 22.44 0.16 2.71 16 24 F -0.14 -4.14 17.11 44.97 0.77 -3.37 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 29 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 30 H 0.16 2.54 6.29 -2.91 -0.02 2.52 16 31 H 0.14 3.17 6.73 -2.91 -0.02 3.15 16 32 H 0.41 9.24 7.67 -92.70 -0.71 8.53 16 33 H 0.06 1.75 7.94 -2.39 -0.02 1.73 16 34 H 0.05 1.66 7.96 -2.38 -0.02 1.64 16 35 H 0.06 1.71 7.18 -2.39 -0.02 1.69 16 36 H 0.05 1.71 6.95 -2.39 -0.02 1.70 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -63.49 341.64 4.72 -58.77 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.31 Total: 14.22 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.13 Total: -30.20 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.57 Total: -75.59 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.94 Total: -9.04 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.77 Total: -3.37 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.49 4.72 -58.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876824115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.463 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds