Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47326 * 2 1 4 4 C 1.36059 * 117.00338 * 179.97438 * 3 2 1 5 5 C 1.38632 * 119.98564 * 0.02562 * 4 3 2 6 6 C 1.38150 * 120.04154 * 179.74967 * 5 4 3 7 7 C 1.38859 * 120.01740 * 0.50113 * 6 5 4 8 8 N 1.39927 * 120.00967 * 179.74904 * 7 6 5 9 9 C 1.46497 * 120.00287 * 359.72229 * 8 7 6 10 10 C 1.52999 * 109.47479 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47296 * 305.00360 * 10 9 8 12 12 C 1.52996 * 109.47239 * 65.00221 * 10 9 8 13 13 C 1.52999 * 109.47323 * 185.00169 * 10 9 8 14 14 C 1.50702 * 109.47522 * 175.00325 * 13 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38841 * 119.98007 * 359.47029 * 7 6 5 23 23 C 1.38294 * 119.95707 * 0.27905 * 22 7 6 24 24 F 1.35097 * 120.01012 * 180.02562 * 23 22 7 25 25 H 1.08991 * 109.47142 * 300.00543 * 1 2 3 26 26 H 1.09003 * 109.46484 * 60.00437 * 1 2 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47395 * 239.99668 * 2 1 3 29 29 H 1.09006 * 109.46961 * 119.99694 * 2 1 3 30 30 H 1.08000 * 119.97794 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.99008 * 180.25342 * 6 5 4 32 32 H 0.97005 * 120.00457 * 179.72413 * 8 7 6 33 33 H 1.09004 * 109.47078 * 60.00078 * 9 8 7 34 34 H 1.08999 * 109.47478 * 300.00557 * 9 8 7 35 35 H 1.09008 * 109.47037 * 300.00381 * 12 10 9 36 36 H 1.09007 * 109.47198 * 59.99899 * 12 10 9 37 37 H 1.09001 * 109.47667 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47527 * 54.99924 * 13 10 9 39 39 H 1.09001 * 109.47054 * 295.00014 * 13 10 9 40 40 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 41 41 H 1.07998 * 120.02566 * 180.25478 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3552 1.5255 0.0005 5 6 4.1995 0.4259 0.0005 6 6 5.5692 0.6056 -0.0041 7 6 6.1016 1.8881 0.0017 8 7 7.4890 2.0699 0.0023 9 6 8.3802 0.9071 0.0028 10 6 9.8354 1.3798 0.0040 11 1 9.9995 2.0527 -0.8375 12 6 10.1311 2.1169 1.3117 13 6 10.7644 0.1706 -0.1211 14 6 12.1902 0.6431 -0.2434 15 1 12.4115 1.7001 -0.2333 16 6 13.2120 -0.2740 -0.3692 17 7 14.4557 0.1385 -0.4814 18 14 12.8292 -2.1023 -0.3873 19 1 12.8682 -2.6299 1.0002 20 1 11.4770 -2.3192 -0.9616 21 1 13.8380 -2.8111 -1.2150 22 6 5.2569 2.9899 0.0011 23 6 3.8858 2.8090 0.0005 24 9 3.0629 3.8804 -0.0006 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.7861 -0.5718 -0.0003 31 1 6.2261 -0.2516 -0.0083 32 1 7.8609 2.9658 0.0023 33 1 8.1938 0.3060 -0.8872 34 1 8.1930 0.3063 0.8928 35 1 9.4691 2.9784 1.4009 36 1 9.9669 1.4439 2.1533 37 1 11.1679 2.4533 1.3128 38 1 10.4950 -0.4045 -1.0070 39 1 10.6645 -0.4575 0.7641 40 1 15.1742 -0.5065 -0.5738 41 1 5.6702 3.9877 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876824116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = -75.438571 kcal Electronic energy + Delta-G solvation = -21199.028967 eV Core-core repulsion = 17800.056101 eV Total energy + Delta-G solvation = -3398.972866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.79621 -40.09170 -38.40378 -36.41659 -33.81282 -32.22144 -31.70507 -30.74169 -28.51499 -27.30599 -25.78031 -24.36918 -22.90173 -21.95625 -21.33344 -19.42860 -18.48453 -17.45501 -17.06582 -16.55034 -16.43686 -15.56614 -15.37514 -15.01982 -14.86157 -14.47778 -14.07562 -14.02191 -13.38183 -13.24752 -12.99871 -12.91534 -12.79744 -12.42443 -12.23451 -11.97138 -11.89508 -11.75685 -11.17365 -11.15098 -11.09980 -10.83566 -10.59471 -10.03421 -9.83162 -9.69436 -9.49141 -9.18389 -8.87670 -8.59337 -7.16361 -6.09409 -4.07680 1.08363 1.44102 3.00861 3.26136 3.34339 3.36230 3.48663 3.61560 4.27376 4.39877 4.58055 4.64212 4.76772 4.94167 5.03332 5.10935 5.23136 5.23734 5.35332 5.42974 5.48909 5.50316 5.60794 5.72705 5.74760 5.89134 6.01900 6.12315 6.18770 6.21728 6.27125 6.48936 6.63148 6.76653 6.94705 7.14057 7.21383 7.30774 7.39696 7.72365 7.80123 8.47420 8.94821 9.52584 11.03765 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.002963 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.503576 B = 9448.207753 C =10283.311745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.316 6.316 4 C 0.027 3.973 5 C -0.128 4.128 6 C -0.171 4.171 7 C 0.222 3.778 8 N -0.737 5.737 9 C 0.123 3.877 10 C -0.087 4.087 11 H 0.069 0.931 12 C -0.135 4.135 13 C -0.006 4.006 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.266 1.266 21 H -0.288 1.288 22 C -0.204 4.204 23 C 0.119 3.881 24 F -0.135 7.135 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.401 0.599 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.283 0.234 1.534 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.231 6.231 4 C -0.020 4.020 5 C -0.148 4.148 6 C -0.194 4.194 7 C 0.116 3.884 8 N -0.365 5.365 9 C -0.001 4.001 10 C -0.106 4.106 11 H 0.087 0.913 12 C -0.192 4.192 13 C -0.044 4.044 14 C -0.555 4.555 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.190 1.190 21 H -0.214 1.214 22 C -0.228 4.228 23 C 0.098 3.902 24 F -0.114 7.114 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.236 0.764 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.150 0.162 1.512 24.198 hybrid contribution 0.139 -0.745 -0.014 0.758 sum -24.011 -0.583 1.499 24.064 Atomic orbital electron populations 1.21761 0.92908 1.02687 1.03491 1.22731 0.95735 0.82274 1.01233 1.86090 1.18124 1.28795 1.90053 1.18591 0.83244 0.92612 1.07551 1.20854 0.93286 0.97424 1.03217 1.20565 0.94562 0.95974 1.08336 1.17498 0.84478 0.92609 0.93774 1.44967 1.01343 1.09450 1.80745 1.21682 0.90211 0.87567 1.00596 1.21245 0.91219 0.99740 0.98412 0.91261 1.21743 1.02053 0.98571 0.96815 1.19569 0.95383 0.93057 0.96389 1.21073 0.88946 0.95282 1.50194 0.90816 1.25027 0.94976 0.98889 0.94636 1.69907 0.99253 1.34531 1.50458 0.86800 0.78446 0.85837 0.78315 1.20325 1.19023 1.21417 1.20300 0.90354 0.99394 1.12768 1.16571 0.87152 0.80760 1.05710 1.91473 1.71910 1.53943 1.94070 0.91577 0.91578 0.90467 0.92187 0.92196 0.84872 0.84994 0.76366 0.92436 0.92474 0.94785 0.93495 0.91191 0.96456 0.96791 0.92711 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.87 10.00 -19.93 -0.20 -4.07 16 4 C 0.03 0.34 6.69 -39.20 -0.26 0.08 16 5 C -0.13 -1.44 9.03 -39.47 -0.36 -1.80 16 6 C -0.17 -2.07 9.31 -39.38 -0.37 -2.44 16 7 C 0.22 2.84 6.65 -83.71 -0.56 2.28 16 8 N -0.74 -9.52 5.47 -58.60 -0.32 -9.84 16 9 C 0.12 1.79 4.30 -4.04 -0.02 1.77 16 10 C -0.09 -1.54 2.37 -90.62 -0.22 -1.76 16 11 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 12 C -0.13 -2.27 8.88 37.16 0.33 -1.94 16 13 C -0.01 -0.14 3.52 -27.88 -0.10 -0.23 16 14 C -0.52 -13.94 8.96 -34.44 -0.31 -14.25 16 15 H 0.07 2.14 7.30 -52.49 -0.38 1.75 16 16 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.20 -2.54 9.87 -39.34 -0.39 -2.93 16 23 C 0.12 1.59 7.31 -39.32 -0.29 1.30 16 24 F -0.14 -1.92 17.11 2.25 0.04 -1.88 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 31 H 0.13 1.50 6.73 -52.49 -0.35 1.14 16 32 H 0.40 4.80 7.67 -40.82 -0.31 4.49 16 33 H 0.06 0.84 7.94 -51.93 -0.41 0.42 16 34 H 0.06 0.82 7.96 -51.93 -0.41 0.40 16 35 H 0.03 0.48 7.18 -51.92 -0.37 0.11 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.16 338.04 -7.53 -37.69 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.20 Total: 1.12 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.04 Total: -18.08 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.45 Total: -36.24 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.16 -7.53 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876824116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.746 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds