Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47616 * 59.99495 * 9 7 5 11 11 H 1.48500 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46767 * 299.99523 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47281 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.47208 * 305.00270 * 16 15 14 18 18 O 1.42906 * 109.47197 * 64.99994 * 16 15 14 19 19 C 1.50704 * 109.47482 * 185.00166 * 16 15 14 20 20 C 1.38249 * 119.97123 * 279.72641 * 19 16 15 21 21 C 1.38190 * 120.02357 * 179.76729 * 20 19 16 22 22 C 1.38459 * 119.97610 * 0.50387 * 21 20 19 23 23 F 1.35101 * 120.03044 * 179.77331 * 22 21 20 24 24 C 1.38466 * 119.94604 * 359.74914 * 22 21 20 25 25 C 1.38190 * 119.97449 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 35 35 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 36 36 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 37 37 H 0.96697 * 113.99414 * 59.99742 * 18 16 15 38 38 H 1.08001 * 119.98280 * 0.02562 * 20 19 16 39 39 H 1.08000 * 120.01647 * 180.25745 * 21 20 19 40 40 H 1.08001 * 120.01281 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98740 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.0919 1.9228 -5.1871 11 1 1.9928 -0.1380 -6.4622 12 1 0.0190 0.6703 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7023 0.1910 4.8892 17 1 2.0626 1.2144 4.7836 18 8 0.2768 0.1959 4.9897 19 6 2.2915 -0.4230 6.1330 20 6 1.6887 -1.5245 6.7115 21 6 2.2308 -2.0914 7.8493 22 6 3.3720 -1.5494 8.4159 23 9 3.9002 -2.1000 9.5308 24 6 3.9718 -0.4430 7.8385 25 6 3.4312 0.1187 6.6975 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9230 -1.8422 -4.7317 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.9881 0.9874 2.3967 35 1 1.6904 -1.6248 3.7297 36 1 3.2116 -0.7049 3.6406 37 1 -0.1136 -0.6835 5.0861 38 1 0.7963 -1.9446 6.2716 39 1 1.7622 -2.9544 8.2987 40 1 4.8618 -0.0192 8.2798 41 1 3.8991 0.9815 6.2467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876881032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -90.952737 kcal Electronic energy + Delta-G solvation = -20985.635495 eV Core-core repulsion = 17585.989885 eV Total energy + Delta-G solvation = -3399.645610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.23474 -39.96873 -37.54142 -36.27147 -33.80330 -32.12530 -31.55967 -31.24787 -27.92215 -26.64560 -24.95121 -23.58454 -23.16957 -22.07766 -21.42649 -19.09843 -18.24824 -17.20810 -16.90003 -16.36497 -15.93908 -15.73956 -15.39607 -14.75565 -14.74206 -14.44317 -14.01509 -13.90157 -13.69688 -13.37648 -13.15493 -12.79983 -12.43219 -12.16397 -12.07846 -11.57339 -11.46986 -11.32965 -11.24040 -10.83970 -10.75476 -10.43985 -10.27498 -10.13207 -9.69439 -9.51796 -9.15837 -9.00863 -8.88214 -8.32264 -8.13932 -5.97192 -3.98300 0.70642 0.82409 3.13916 3.34933 3.39192 3.41847 3.86428 4.04105 4.26006 4.31683 4.47075 4.48681 4.74951 4.79159 4.82058 4.98834 5.08684 5.38556 5.44675 5.53399 5.56490 5.63178 5.71517 5.74612 5.81921 5.88265 6.13393 6.15755 6.40892 6.46905 6.54775 6.70621 7.00790 7.18779 7.20652 7.31588 7.45717 7.62569 7.69849 7.85511 8.02953 8.47045 9.07924 9.65006 11.14353 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.040275 B = 0.002459 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.054046 B =11385.694555 C =11653.081664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.678 5.678 15 C 0.032 3.968 16 C 0.153 3.847 17 H 0.107 0.893 18 O -0.540 6.540 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.150 4.150 22 C 0.095 3.905 23 F -0.141 7.141 24 C -0.152 4.152 25 C -0.080 4.080 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.338 0.662 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.372 0.628 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 0.612 24.397 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.065 4.065 14 N -0.309 5.309 15 C -0.099 4.099 16 C 0.093 3.907 17 H 0.125 0.875 18 O -0.345 6.345 19 C -0.124 4.124 20 C -0.099 4.099 21 C -0.169 4.169 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.170 4.170 25 C -0.098 4.098 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.219 0.781 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.035 0.824 24.272 24.286 hybrid contribution 0.961 -0.197 -0.664 1.185 sum 0.996 0.627 23.607 23.637 Atomic orbital electron populations 1.21587 0.95624 1.00533 1.00266 1.21191 0.96094 0.98878 0.93904 0.92831 1.19121 0.95859 0.95583 0.90478 1.21204 1.34650 1.08277 0.90981 0.92591 1.25024 0.95343 0.95104 0.99109 1.69955 1.39070 1.21252 1.23482 0.86682 0.78927 0.80085 0.82451 1.20312 1.21393 1.20245 1.22174 0.97081 0.97722 0.89480 1.60455 1.63925 1.05593 1.00937 1.22635 0.98072 0.98528 0.90617 1.20800 0.81416 0.99588 0.88920 0.87519 1.86665 1.18113 1.33813 1.95871 1.20731 0.96534 0.96699 0.98413 1.20784 0.99562 0.94835 0.94761 1.21131 0.96081 1.01901 0.97775 1.17759 0.94700 0.94764 0.85224 1.91505 1.85875 1.84822 1.49763 1.21160 1.01745 0.96406 0.97719 1.20901 0.94978 0.99489 0.94465 0.94256 0.92816 0.93729 0.96989 0.96585 0.93048 0.91617 0.95844 0.84434 0.90720 0.94583 0.78074 0.84925 0.84568 0.84589 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.65 2.48 -90.63 -0.22 -1.88 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.37 8.41 -34.43 -0.29 -14.66 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16 14 N -0.68 -9.27 5.90 -113.78 -0.67 -9.95 16 15 C 0.03 0.34 5.30 -3.83 -0.02 0.32 16 16 C 0.15 1.42 3.39 -27.88 -0.09 1.33 16 17 H 0.11 0.97 8.00 -51.93 -0.42 0.55 16 18 O -0.54 -5.68 13.13 -35.23 -0.46 -6.14 16 19 C -0.12 -1.04 4.97 -104.61 -0.52 -1.56 16 20 C -0.08 -0.63 9.32 -39.59 -0.37 -1.00 16 21 C -0.15 -1.21 10.03 -39.52 -0.40 -1.60 16 22 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 23 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 24 C -0.15 -1.23 10.03 -39.51 -0.40 -1.62 16 25 C -0.08 -0.63 9.67 -39.60 -0.38 -1.02 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.42 8.73 -39.29 -0.34 4.08 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.37 2.80 7.49 45.56 0.34 3.14 16 38 H 0.13 0.75 6.77 -52.49 -0.36 0.40 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.82 8.04 -52.48 -0.42 0.40 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.46 345.57 -8.75 -40.22 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.69 Total: 1.69 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.89 Total: -20.08 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.06 Total: -36.25 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.46 Total: -6.14 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.46 -8.75 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876881032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.737 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds