Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47171 * 2 1 4 4 C 1.53004 * 109.46740 * 240.00264 * 2 1 3 5 5 C 1.50695 * 109.47326 * 64.99933 * 4 2 1 6 6 H 1.08011 * 120.00052 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00260 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99737 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00144 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46827 * 119.99901 * 9 7 5 12 12 H 1.48499 * 109.47284 * 239.99696 * 9 7 5 13 13 C 1.52995 * 109.47246 * 120.00104 * 2 1 3 14 14 N 1.46904 * 109.47140 * 294.99886 * 13 2 1 15 15 C 1.46895 * 110.99686 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47182 * 179.97438 * 15 14 13 17 17 H 1.09007 * 109.47044 * 59.99609 * 16 15 14 18 18 O 1.42901 * 109.47138 * 300.00393 * 16 15 14 19 19 C 1.50696 * 109.47580 * 180.02562 * 16 15 14 20 20 C 1.38248 * 119.97128 * 264.99837 * 19 16 15 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 16 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.09009 * 109.46786 * 299.99631 * 1 2 3 27 27 H 1.08992 * 109.47495 * 59.99794 * 1 2 3 28 28 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46869 * 184.99617 * 4 2 1 30 30 H 1.08997 * 109.46786 * 304.99511 * 4 2 1 31 31 H 0.97002 * 119.99864 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47094 * 174.99925 * 13 2 1 33 33 H 1.09000 * 109.47076 * 55.00023 * 13 2 1 34 34 H 1.00902 * 110.99693 * 303.95530 * 14 13 2 35 35 H 1.09003 * 109.47528 * 60.00339 * 15 14 13 36 36 H 1.08996 * 109.47273 * 299.99800 * 15 14 13 37 37 H 0.96709 * 113.99695 * 299.99792 * 18 16 15 38 38 H 1.08001 * 119.98881 * 0.02562 * 20 19 16 39 39 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4022 -3.7284 8 7 2.6753 -1.5192 -3.8513 9 14 1.4973 0.5623 -5.2497 10 1 0.7401 1.7733 -4.8434 11 1 2.7151 0.9668 -5.9971 12 1 0.6430 -0.2870 -6.1180 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1259 -0.6266 3.6670 16 6 1.7037 0.1915 4.8891 17 1 0.6167 0.2691 4.9165 18 8 2.2726 1.4997 4.8064 19 6 2.1909 -0.4893 6.1422 20 6 1.3525 -1.3426 6.8352 21 6 1.7984 -1.9679 7.9841 22 6 3.0851 -1.7391 8.4414 23 9 3.5219 -2.3494 9.5648 24 6 3.9219 -0.8798 7.7496 25 6 3.4758 -0.2601 6.5977 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1263 -0.7994 -1.2057 30 1 1.6054 -1.7198 -1.2952 31 1 2.9226 -1.8422 -4.7319 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 1.9883 0.9873 2.3966 35 1 3.2129 -0.7037 3.6399 36 1 1.6923 -1.6245 3.7299 37 1 3.2393 1.5072 4.7781 38 1 0.3490 -1.5213 6.4781 39 1 1.1435 -2.6348 8.5251 40 1 4.9245 -0.6975 8.1076 41 1 4.1300 0.4063 6.0553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876881034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -92.445845 kcal Electronic energy + Delta-G solvation = -20990.593205 eV Core-core repulsion = 17590.882849 eV Total energy + Delta-G solvation = -3399.710356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.23210 -40.00275 -37.63365 -36.27719 -33.77175 -32.14393 -31.55744 -31.28291 -27.95000 -26.66609 -24.98633 -23.51820 -23.18923 -22.05449 -21.41339 -19.12144 -18.27792 -17.23798 -16.92274 -16.37896 -15.94316 -15.77226 -15.54382 -14.80085 -14.64619 -14.40297 -14.04692 -13.92654 -13.67349 -13.40419 -13.12142 -12.78255 -12.52446 -12.13137 -12.08393 -11.59115 -11.46392 -11.37951 -11.22499 -10.85848 -10.74036 -10.52309 -10.28452 -10.16256 -9.70238 -9.51677 -9.16581 -8.99531 -8.87218 -8.33120 -8.16689 -5.97711 -3.98653 0.70830 0.82588 3.13850 3.32232 3.39871 3.44173 3.86248 4.04390 4.16970 4.30702 4.47160 4.48628 4.72415 4.81080 4.90256 4.96638 5.08944 5.38275 5.44477 5.52810 5.58886 5.66143 5.71913 5.73442 5.82206 5.88859 6.14167 6.15174 6.40253 6.47117 6.54154 6.69207 7.00140 7.18091 7.19720 7.29806 7.34894 7.64169 7.70163 7.85271 8.02692 8.46835 9.08048 9.64856 11.13910 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041221 B = 0.002446 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.104999 B =11444.922429 C =11596.810360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.032 3.968 16 C 0.150 3.850 17 H 0.119 0.881 18 O -0.550 6.550 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.151 4.151 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.150 4.150 25 C -0.083 4.083 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.344 0.656 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.370 0.630 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 0.778 24.373 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.098 4.098 16 C 0.091 3.909 17 H 0.136 0.864 18 O -0.355 6.355 19 C -0.123 4.123 20 C -0.097 4.097 21 C -0.170 4.170 22 C 0.075 3.925 23 F -0.120 7.120 24 C -0.169 4.169 25 C -0.101 4.101 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.218 0.782 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.503 0.533 24.321 24.332 hybrid contribution 1.517 0.132 -0.716 1.682 sum 1.014 0.664 23.605 23.637 Atomic orbital electron populations 1.21592 0.95687 1.00528 1.00225 1.21197 0.96053 0.98931 0.93921 0.92781 1.19131 0.95882 0.95594 0.90495 1.21279 1.34435 1.08271 0.90953 0.92478 1.25030 0.95367 0.95108 0.99137 1.69979 1.39232 1.21281 1.23258 0.86569 0.78242 0.80144 0.83263 1.19724 1.21124 1.21090 1.22170 0.97111 0.97709 0.89470 1.60457 1.63910 1.06156 1.00939 1.22595 0.97713 0.98821 0.90643 1.20930 0.99246 0.81757 0.88991 0.86370 1.86685 1.25005 1.27348 1.96449 1.20704 0.94573 0.98731 0.98294 1.20910 1.00053 0.95104 0.93606 1.21169 0.94799 1.02563 0.98444 1.17760 0.93833 0.95973 0.84906 1.91506 1.89915 1.81415 1.49135 1.21120 1.00576 0.98492 0.96727 1.20753 0.95253 0.98688 0.95434 0.93877 0.92750 0.94209 0.96970 0.96566 0.93168 0.95848 0.91603 0.83731 0.95244 0.90134 0.78210 0.84509 0.84542 0.84619 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16 14 N -0.68 -9.40 5.96 -113.78 -0.68 -10.08 16 15 C 0.03 0.35 5.37 -3.83 -0.02 0.33 16 16 C 0.15 1.40 3.48 -27.88 -0.10 1.30 16 17 H 0.12 1.16 8.05 -51.93 -0.42 0.74 16 18 O -0.55 -5.34 12.47 -35.23 -0.44 -5.78 16 19 C -0.12 -1.03 5.01 -104.62 -0.52 -1.56 16 20 C -0.08 -0.62 9.68 -39.59 -0.38 -1.01 16 21 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 22 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 23 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 24 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 25 C -0.08 -0.64 9.32 -39.59 -0.37 -1.01 16 26 H 0.04 0.75 7.75 -51.92 -0.40 0.34 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.34 4.68 8.12 -39.29 -0.32 4.36 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.37 2.42 7.39 45.56 0.34 2.76 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.13 0.73 6.61 -52.49 -0.35 0.39 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -31.20 344.36 -8.74 -39.94 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.67 Total: 1.75 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.90 Total: -20.08 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.06 Total: -36.36 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.44 Total: -5.78 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.20 -8.74 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876881034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.504 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds