Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46789 * 2 1 4 4 C 1.53001 * 109.47206 * 119.99780 * 2 1 3 5 5 C 1.50694 * 109.46896 * 295.00130 * 4 2 1 6 6 H 1.07996 * 120.00837 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99598 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00128 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47490 * 59.99883 * 9 7 5 11 11 H 1.48502 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47058 * 299.99677 * 9 7 5 13 13 C 1.52998 * 109.47183 * 240.00302 * 2 1 3 14 14 N 1.46894 * 109.47557 * 64.99429 * 13 2 1 15 15 C 1.46900 * 111.00111 * 179.97438 * 14 13 2 16 16 C 1.53007 * 109.47096 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.46675 * 60.00006 * 16 15 14 18 18 O 1.42907 * 109.47019 * 300.00375 * 16 15 14 19 19 C 1.50697 * 109.47093 * 180.02562 * 16 15 14 20 20 C 1.38216 * 120.01502 * 94.97962 * 19 16 15 21 21 C 1.38226 * 120.02514 * 179.97438 * 20 19 16 22 22 C 1.38265 * 120.05338 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02279 * 359.74109 * 22 21 20 24 24 C 1.38436 * 120.00925 * 274.99717 * 19 16 15 25 25 F 1.35104 * 120.02854 * 359.95937 * 24 19 16 26 26 H 1.08996 * 109.47152 * 59.99984 * 1 2 3 27 27 H 1.08997 * 109.46590 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47121 * 299.99671 * 1 2 3 29 29 H 1.08996 * 109.46632 * 55.00327 * 4 2 1 30 30 H 1.09008 * 109.46923 * 175.00316 * 4 2 1 31 31 H 0.97002 * 120.00205 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46954 * 304.99381 * 13 2 1 33 33 H 1.09003 * 109.46904 * 184.99774 * 13 2 1 34 34 H 1.00905 * 110.99892 * 56.04590 * 14 13 2 35 35 H 1.08994 * 109.46733 * 60.00489 * 15 14 13 36 36 H 1.08991 * 109.47317 * 300.00222 * 15 14 13 37 37 H 0.96703 * 113.99673 * 299.99928 * 18 16 15 38 38 H 1.08001 * 119.98628 * 0.02562 * 20 19 16 39 39 H 1.08001 * 119.97063 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.98889 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01677 * 180.27805 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4765 6 1 1.0807 0.9746 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6774 -1.5180 3.8511 9 14 1.4985 0.5628 5.2496 10 1 0.0185 0.6682 5.3093 11 1 1.9947 -0.1365 6.4621 12 1 2.0897 1.9236 5.1870 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6671 16 6 1.7034 0.1915 -4.8892 17 1 2.1374 1.1894 -4.8260 18 8 0.2784 0.2932 -4.9250 19 6 2.1896 -0.4899 -6.1423 20 6 1.3514 -1.3432 -6.8350 21 6 1.7969 -1.9679 -7.9847 22 6 3.0815 -1.7405 -8.4429 23 6 3.9195 -0.8842 -7.7548 24 6 3.4760 -0.2617 -6.5999 25 9 4.2961 0.5725 -5.9240 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6055 -1.7197 1.2951 30 1 3.1265 -0.7994 1.2056 31 1 2.9247 -1.8410 4.7317 32 1 1.6055 -1.7197 -1.2951 33 1 3.1264 -0.7993 -1.2056 34 1 1.9881 0.9873 -2.3967 35 1 1.6922 -1.6245 -3.7300 36 1 3.2127 -0.7037 -3.6400 37 1 -0.1754 -0.5589 -4.9812 38 1 0.3477 -1.5212 -6.4782 39 1 1.1414 -2.6348 -8.5250 40 1 3.4284 -2.2288 -9.3415 41 1 4.9214 -0.7031 -8.1153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876959701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -109.750826 kcal Electronic energy + Delta-G solvation = -21366.869212 eV Core-core repulsion = 17966.408456 eV Total energy + Delta-G solvation = -3400.460757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97964 -40.50908 -38.67584 -37.60438 -35.42133 -33.86762 -32.52297 -31.51014 -29.42092 -28.39489 -26.48267 -24.76032 -23.73719 -23.44218 -22.27991 -20.77594 -18.99407 -18.49512 -17.88411 -17.59623 -16.82013 -16.61572 -16.57161 -16.41748 -15.71360 -15.50042 -15.34598 -15.07289 -14.75663 -14.39669 -14.19662 -13.91753 -13.53221 -13.32903 -13.16958 -13.04357 -12.88145 -12.74157 -12.56171 -12.26682 -12.20911 -12.07562 -12.00207 -11.50892 -11.25191 -11.09631 -10.84559 -10.53458 -9.95507 -9.65524 -9.36922 -8.17878 -6.27129 0.12677 0.22642 1.39873 1.42844 1.50500 2.41805 2.57558 3.03302 3.15405 3.24667 3.44273 3.74346 3.78379 3.94010 4.00638 4.16104 4.17463 4.30252 4.38647 4.40223 4.52841 4.61156 4.78897 4.86424 4.89805 4.92083 5.02462 5.06063 5.19836 5.27778 5.36328 5.44669 5.46587 5.51048 5.55576 5.80224 5.88037 5.91443 5.98430 6.30460 6.38607 6.79501 6.88546 7.41061 8.94125 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035844 B = 0.002752 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.973084 B =10173.185742 C =10420.327077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.673 5.673 15 C 0.038 3.962 16 C 0.164 3.836 17 H 0.094 0.906 18 O -0.548 6.548 19 C -0.162 4.162 20 C -0.088 4.088 21 C -0.124 4.124 22 C -0.090 4.090 23 C -0.161 4.161 24 C 0.076 3.924 25 F -0.153 7.153 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.037 0.963 29 H -0.009 1.009 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.341 0.659 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.386 0.614 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 -1.042 -27.746 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.303 5.303 15 C -0.092 4.092 16 C 0.104 3.896 17 H 0.112 0.888 18 O -0.356 6.356 19 C -0.164 4.164 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.108 4.108 23 C -0.179 4.179 24 C 0.056 3.944 25 F -0.131 7.131 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.010 0.990 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.236 0.764 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.839 -0.775 -27.588 27.660 hybrid contribution 1.361 0.034 1.392 1.947 sum -0.478 -0.740 -26.197 26.211 Atomic orbital electron populations 1.21467 0.94463 1.00437 1.00503 1.21012 0.96901 0.98304 0.93079 0.93019 1.19007 0.93987 0.94756 0.92724 1.21615 1.34523 1.08618 0.92096 0.92110 1.25963 0.95227 0.96118 1.02678 1.70091 1.40222 1.22993 1.24368 0.85554 0.78991 0.78735 0.78105 1.19138 1.20951 1.19309 1.21873 0.96365 0.97500 0.89445 1.60416 1.63696 1.05622 1.00597 1.22603 0.97694 0.98893 0.89999 1.20419 0.82084 0.98298 0.88798 0.88792 1.86630 1.16523 1.35963 1.96439 1.20657 0.93861 1.02007 0.99889 1.21145 1.00119 0.94259 0.95085 1.21617 0.96624 0.99850 0.96086 1.21461 0.93359 0.95952 1.00019 1.21447 1.02598 0.99328 0.94567 1.17894 0.88784 0.93907 0.93771 1.91468 1.72067 1.69809 1.79792 0.91460 0.94465 0.94425 0.99042 0.99746 0.92909 0.91665 0.96750 0.84131 0.89900 0.95339 0.76406 0.82942 0.82218 0.82017 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -3.11 2.48 -10.79 -0.03 -3.14 16 3 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.59 8.41 25.60 0.22 -30.37 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 8 N -0.94 -58.05 13.28 21.45 0.28 -57.76 16 9 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.08 2.73 5.07 86.30 0.44 3.17 16 14 N -0.67 -19.52 5.82 -513.91 -2.99 -22.52 16 15 C 0.04 0.92 5.33 86.31 0.46 1.38 16 16 C 0.16 3.55 3.19 29.85 0.10 3.65 16 17 H 0.09 2.27 7.79 -2.39 -0.02 2.25 16 18 O -0.55 -11.70 12.85 -148.98 -1.92 -13.61 16 19 C -0.16 -3.09 5.07 -19.82 -0.10 -3.19 16 20 C -0.09 -1.20 9.30 22.26 0.21 -1.00 16 21 C -0.12 -1.27 10.04 22.27 0.22 -1.05 16 22 C -0.09 -0.96 10.04 22.26 0.22 -0.73 16 23 C -0.16 -2.44 10.03 22.31 0.22 -2.22 16 24 C 0.08 1.55 7.24 22.38 0.16 1.71 16 25 F -0.15 -3.71 16.57 44.97 0.75 -2.97 16 26 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.57 6.95 -2.39 -0.02 1.55 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.34 9.78 8.73 -89.69 -0.78 8.99 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.39 5.53 7.32 -74.06 -0.54 4.98 16 38 H 0.15 1.38 6.40 -2.91 -0.02 1.36 16 39 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -69.33 344.03 1.21 -68.11 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.29 Total: 14.89 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.36 Total: -33.31 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.71 Total: -80.28 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.92 Total: -13.61 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.75 Total: -2.97 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.33 1.21 -68.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876959701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.637 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds