Wall clock time and date at job start Tue Mar 31 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47584 * 2 1 4 4 C 1.53005 * 109.46971 * 120.00064 * 2 1 3 5 5 C 1.50699 * 109.47212 * 294.99679 * 4 2 1 6 6 H 1.08000 * 119.99574 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99818 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99893 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00347 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46970 * 89.99843 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99784 * 9 7 5 12 12 H 1.48501 * 109.47320 * 330.00439 * 9 7 5 13 13 C 1.52998 * 109.47072 * 239.99883 * 2 1 3 14 14 N 1.46900 * 109.47093 * 65.00253 * 13 2 1 15 15 C 1.46905 * 111.00154 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47150 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47153 * 304.99641 * 16 15 14 18 18 O 1.42898 * 109.47319 * 64.99949 * 16 15 14 19 19 C 1.50699 * 109.47078 * 184.99848 * 16 15 14 20 20 C 1.38223 * 120.01351 * 264.99829 * 19 16 15 21 21 C 1.38215 * 120.02694 * 179.97438 * 20 19 16 22 22 C 1.38272 * 120.05419 * 0.02562 * 21 20 19 23 23 C 1.38182 * 120.01956 * 0.02562 * 22 21 20 24 24 C 1.38434 * 120.01417 * 84.71973 * 19 16 15 25 25 F 1.35095 * 120.02639 * 0.02562 * 24 19 16 26 26 H 1.08999 * 109.46942 * 59.99704 * 1 2 3 27 27 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46784 * 299.99920 * 1 2 3 29 29 H 1.08998 * 109.46874 * 54.99799 * 4 2 1 30 30 H 1.08995 * 109.47004 * 174.99588 * 4 2 1 31 31 H 0.96992 * 120.00330 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47116 * 305.00241 * 13 2 1 33 33 H 1.08999 * 109.47214 * 185.00382 * 13 2 1 34 34 H 1.00895 * 110.99884 * 56.04570 * 14 13 2 35 35 H 1.09001 * 109.47063 * 59.99499 * 15 14 13 36 36 H 1.09004 * 109.46681 * 300.00124 * 15 14 13 37 37 H 0.96698 * 113.99898 * 59.99520 * 18 16 15 38 38 H 1.08005 * 119.98465 * 359.95805 * 20 19 16 39 39 H 1.08002 * 119.97828 * 180.02562 * 21 20 19 40 40 H 1.07990 * 119.99012 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00823 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 1.6441 0.2767 4.7995 9 14 2.9626 -1.9890 3.9028 10 1 4.4161 -1.6855 3.8792 11 1 2.6144 -2.6432 5.1897 12 1 2.6289 -2.8996 2.7783 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1248 -0.6272 -3.6672 16 6 1.7025 0.1910 -4.8892 17 1 0.6236 0.3448 -4.8683 18 8 2.3647 1.4571 -4.8668 19 6 2.0799 -0.5511 -6.1454 20 6 3.2743 -0.2703 -6.7819 21 6 3.6209 -0.9511 -7.9337 22 6 2.7733 -1.9134 -8.4510 23 6 1.5783 -2.1950 -7.8170 24 6 1.2331 -1.5183 -6.6591 25 9 0.0678 -1.7972 -6.0351 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 1.8907 -0.0466 5.6801 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7996 -1.2055 34 1 1.9882 0.9872 -2.3966 35 1 1.6904 -1.6249 -3.7297 36 1 3.2117 -0.7051 -3.6405 37 1 3.3296 1.3966 -4.8835 38 1 3.9368 0.4815 -6.3791 39 1 4.5545 -0.7314 -8.4302 40 1 3.0450 -2.4444 -9.3512 41 1 0.9162 -2.9463 -8.2214 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876959703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:53 Heat of formation + Delta-G solvation = -86.535374 kcal Electronic energy + Delta-G solvation = -21423.275968 eV Core-core repulsion = 18023.821909 eV Total energy + Delta-G solvation = -3399.454059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18653 -39.89012 -37.79518 -36.41734 -33.82458 -32.22573 -31.68206 -30.94531 -28.34886 -27.11716 -25.09551 -23.35684 -22.99587 -21.83288 -21.53037 -19.13061 -18.34644 -17.08398 -16.96552 -16.77597 -16.00567 -15.80252 -15.59280 -14.93230 -14.50804 -14.43243 -14.22276 -14.03475 -13.49265 -13.44609 -12.91238 -12.80473 -12.51577 -12.32689 -12.06864 -11.79272 -11.67157 -11.61514 -11.31990 -10.93015 -10.68102 -10.54640 -10.32418 -9.89800 -9.63507 -9.47094 -9.33032 -9.06010 -8.98846 -8.49301 -8.21950 -5.99607 -3.96370 0.72026 0.77704 3.13855 3.32350 3.40012 3.43974 3.86447 3.94300 4.09114 4.33547 4.48744 4.49050 4.64417 4.82893 4.85326 4.92939 5.04853 5.33837 5.36056 5.49665 5.55900 5.60962 5.65797 5.73844 5.79699 5.95279 5.99309 6.05112 6.32161 6.43748 6.45965 6.62617 6.87795 7.06948 7.16133 7.23243 7.28526 7.32491 7.50395 7.61762 7.85347 8.60326 9.06516 9.63284 11.13910 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002917 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.182787 B = 9597.025973 C = 9663.139551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.036 3.964 16 C 0.150 3.850 17 H 0.122 0.878 18 O -0.547 6.547 19 C -0.148 4.148 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.153 4.153 24 C 0.109 3.891 25 F -0.132 7.132 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.346 0.654 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.370 0.630 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -3.900 -28.502 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.313 5.313 15 C -0.094 4.094 16 C 0.091 3.909 17 H 0.139 0.861 18 O -0.353 6.353 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.146 4.146 22 C -0.112 4.112 23 C -0.172 4.172 24 C 0.090 3.910 25 F -0.111 7.111 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.218 0.782 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.902 -3.977 -28.285 28.710 hybrid contribution 1.886 -1.083 0.341 2.201 sum 4.788 -5.060 -27.944 28.799 Atomic orbital electron populations 1.21600 0.95192 1.00644 1.00772 1.21004 0.96455 0.99023 0.92755 0.92153 1.19617 0.95313 0.96259 0.93520 1.21139 1.35243 1.09516 0.89078 0.90780 1.25032 0.95748 0.96886 0.95966 1.69916 1.47280 1.39302 0.97988 0.86804 0.80554 0.84582 0.77469 1.20469 1.21473 1.19096 1.22195 0.97003 0.97801 0.89682 1.60411 1.63944 1.06156 1.00797 1.22556 0.97582 0.98761 0.90540 1.20828 0.98867 0.82500 0.88738 0.86085 1.86694 1.23364 1.28566 1.96646 1.20687 0.95906 0.98528 0.99829 1.20805 0.95036 0.99125 0.95353 1.21196 1.00252 0.96727 0.96428 1.21051 0.93208 0.97260 0.99640 1.21195 0.98946 1.01702 0.95348 1.17503 0.83080 0.97365 0.93101 1.91538 1.45366 1.92490 1.81676 0.93608 0.94240 0.92211 0.96617 0.97441 0.92848 0.91583 0.95880 0.83574 0.90256 0.95137 0.78174 0.85043 0.85176 0.84963 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.65 8.96 -34.44 -0.31 -14.95 16 6 H 0.07 2.28 7.30 -52.49 -0.38 1.89 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.03 5.07 -3.83 -0.02 1.01 16 14 N -0.68 -9.73 5.96 -113.77 -0.68 -10.41 16 15 C 0.04 0.42 5.34 -3.82 -0.02 0.40 16 16 C 0.15 1.60 3.22 -27.88 -0.09 1.52 16 17 H 0.12 1.49 7.80 -51.93 -0.41 1.09 16 18 O -0.55 -5.59 12.51 -35.23 -0.44 -6.03 16 19 C -0.15 -1.41 5.07 -104.56 -0.53 -1.94 16 20 C -0.09 -0.64 9.30 -39.60 -0.37 -1.01 16 21 C -0.13 -0.82 10.04 -39.58 -0.40 -1.22 16 22 C -0.09 -0.60 10.05 -39.59 -0.40 -1.00 16 23 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 24 C 0.11 1.10 7.24 -39.42 -0.29 0.81 16 25 F -0.13 -1.55 16.57 2.25 0.04 -1.51 16 26 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.35 4.83 8.29 -39.29 -0.33 4.51 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.37 2.45 7.33 45.56 0.33 2.78 16 38 H 0.13 0.70 6.41 -52.48 -0.34 0.36 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -32.23 339.83 -8.38 -40.61 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.62 Total: 2.69 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.90 Total: -20.36 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.10 Total: -37.88 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.44 Total: -6.03 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.23 -8.38 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876959703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.929 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds