Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46920 * 2 1 4 4 C 1.52998 * 109.47066 * 240.00379 * 2 1 3 5 5 C 1.50694 * 109.47468 * 64.99509 * 4 2 1 6 6 H 1.07998 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47541 * 60.00186 * 9 7 5 11 11 H 1.48501 * 109.46995 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47095 * 299.99910 * 9 7 5 13 13 C 1.53003 * 109.47460 * 119.99999 * 2 1 3 14 14 N 1.46903 * 109.46899 * 295.00352 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.47395 * 305.00364 * 16 15 14 18 18 O 1.42897 * 109.46881 * 64.99925 * 16 15 14 19 19 C 1.50699 * 109.47053 * 184.99757 * 16 15 14 20 20 C 1.38261 * 119.98634 * 279.72959 * 19 16 15 21 21 C 1.38230 * 120.04894 * 179.73123 * 20 19 16 22 22 C 1.38220 * 120.02309 * 0.54224 * 21 20 19 23 23 C 1.38437 * 119.97780 * 359.72974 * 22 21 20 24 24 F 1.35094 * 120.03037 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98331 * 100.00446 * 19 16 15 26 26 H 1.09006 * 109.47185 * 299.99889 * 1 2 3 27 27 H 1.09001 * 109.47385 * 59.99565 * 1 2 3 28 28 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47243 * 184.99897 * 4 2 1 30 30 H 1.09004 * 109.46823 * 304.99742 * 4 2 1 31 31 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47042 * 175.00292 * 13 2 1 33 33 H 1.08995 * 109.46589 * 54.99533 * 13 2 1 34 34 H 1.00895 * 111.00497 * 56.03863 * 14 13 2 35 35 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 36 36 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 37 37 H 0.96702 * 114.00429 * 59.99915 * 18 16 15 38 38 H 1.07998 * 119.98063 * 359.97438 * 20 19 16 39 39 H 1.08002 * 119.98964 * 180.27416 * 21 20 19 40 40 H 1.08005 * 120.01384 * 179.71254 * 22 21 20 41 41 H 1.08004 * 120.01603 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3756 7 6 1.9931 -0.4017 -3.7282 8 7 2.6764 -1.5187 -3.8512 9 14 1.4994 0.5635 -5.2496 10 1 2.0915 1.9238 -5.1866 11 1 1.9944 -0.1366 -6.4621 12 1 0.0194 0.6700 -5.3095 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7024 0.1909 4.8892 17 1 2.0626 1.2142 4.7837 18 8 0.2770 0.1958 4.9897 19 6 2.2915 -0.4233 6.1329 20 6 1.6890 -1.5249 6.7116 21 6 2.2314 -2.0927 7.8492 22 6 3.3706 -1.5528 8.4159 23 6 3.9716 -0.4463 7.8405 24 9 5.0854 0.0820 8.3932 25 6 3.4305 0.1183 6.6976 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1262 -0.7994 -1.2057 30 1 1.6053 -1.7197 -1.2952 31 1 2.9236 -1.8416 -4.7318 32 1 3.1263 -0.7994 1.2055 33 1 1.6054 -1.7197 1.2951 34 1 0.6529 0.1794 2.4753 35 1 3.2117 -0.7050 3.6405 36 1 1.6904 -1.6248 3.7297 37 1 -0.1135 -0.6836 5.0861 38 1 0.7961 -1.9446 6.2723 39 1 1.7624 -2.9560 8.2979 40 1 3.7916 -1.9937 9.3074 41 1 3.8982 0.9818 6.2481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876989571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = -92.216400 kcal Electronic energy + Delta-G solvation = -21056.882598 eV Core-core repulsion = 17657.182192 eV Total energy + Delta-G solvation = -3399.700407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.20680 -39.99182 -37.67854 -36.35599 -33.76543 -32.31982 -31.65174 -30.78234 -28.15376 -26.74164 -25.23377 -23.41378 -23.18879 -22.01877 -21.42628 -18.98818 -18.22518 -16.99439 -16.62348 -16.53024 -16.26048 -15.90189 -15.71363 -15.06421 -14.64789 -14.34537 -14.16132 -14.02531 -13.47143 -13.23970 -12.86432 -12.81398 -12.30590 -12.23964 -12.07877 -11.90613 -11.70320 -11.37356 -11.22150 -10.87136 -10.73993 -10.53511 -10.30458 -10.16406 -9.71751 -9.38287 -9.15157 -9.05528 -8.94622 -8.32111 -8.20077 -5.96935 -3.98143 0.73568 0.80595 3.14740 3.35288 3.39524 3.42207 3.77691 4.05777 4.19776 4.38753 4.47428 4.55365 4.66487 4.78204 4.87298 5.02803 5.04989 5.38134 5.38803 5.52272 5.58692 5.66317 5.72771 5.76590 5.82069 5.90430 6.06413 6.11703 6.24449 6.46388 6.48455 6.56104 6.92240 7.11499 7.17132 7.28740 7.33681 7.64352 7.70249 7.86157 8.03180 8.47083 9.08041 9.65241 11.14589 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.002554 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.629422 B =10960.616624 C =11251.417863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.686 5.686 15 C 0.033 3.967 16 C 0.147 3.853 17 H 0.120 0.880 18 O -0.549 6.549 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.157 4.157 23 C 0.101 3.899 24 F -0.139 7.139 25 C -0.142 4.142 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.371 0.629 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -1.307 24.909 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.097 4.097 16 C 0.088 3.912 17 H 0.138 0.862 18 O -0.354 6.354 19 C -0.083 4.083 20 C -0.142 4.142 21 C -0.105 4.105 22 C -0.175 4.175 23 C 0.081 3.919 24 F -0.118 7.118 25 C -0.161 4.161 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.218 0.782 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.680 -0.338 24.695 24.706 hybrid contribution -0.531 -0.933 -0.663 1.262 sum -1.211 -1.271 24.031 24.095 Atomic orbital electron populations 1.21744 0.96619 1.00402 1.00404 1.21223 0.94934 1.00118 0.94037 0.91586 1.19105 0.96110 0.95347 0.90368 1.21203 1.34695 1.08281 0.90990 0.92584 1.25021 0.95321 0.95100 0.99102 1.69955 1.39050 1.21253 1.23485 0.86685 0.78862 0.80158 0.82453 1.20250 1.21389 1.20301 1.22157 1.00335 0.94406 0.89516 1.60514 1.20480 1.50060 1.00853 1.22592 1.01671 0.95007 0.90452 1.20976 0.80456 1.00873 0.88895 0.86204 1.86685 1.18889 1.33945 1.95916 1.20459 0.94948 0.95567 0.97345 1.20971 1.00563 0.95989 0.96633 1.20987 0.94823 0.99397 0.95317 1.21183 0.97836 0.96572 1.01950 1.17695 0.85142 0.94843 0.94188 1.91512 1.49759 1.85720 1.84789 1.21033 0.97394 1.01970 0.95659 0.94812 0.91834 0.94091 0.96690 0.96786 0.93043 0.91502 0.95865 0.83504 0.90080 0.95097 0.78157 0.85458 0.84818 0.84723 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.72 2.54 -90.62 -0.23 -1.95 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 14 N -0.69 -9.79 6.50 -113.78 -0.74 -10.53 16 15 C 0.03 0.37 5.34 -3.82 -0.02 0.35 16 16 C 0.15 1.45 3.45 -27.88 -0.10 1.35 16 17 H 0.12 1.26 8.00 -51.93 -0.42 0.85 16 18 O -0.55 -5.43 12.71 -35.23 -0.45 -5.88 16 19 C -0.08 -0.74 4.97 -104.64 -0.52 -1.26 16 20 C -0.12 -0.93 9.32 -39.58 -0.37 -1.30 16 21 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 22 C -0.16 -1.23 10.03 -39.51 -0.40 -1.63 16 23 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 24 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 25 C -0.14 -1.33 9.65 -39.51 -0.38 -1.71 16 26 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 27 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.35 4.82 6.54 -39.29 -0.26 4.56 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.37 2.42 7.50 45.56 0.34 2.76 16 38 H 0.13 0.69 6.77 -52.49 -0.36 0.33 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.14 1.17 8.04 -52.48 -0.42 0.75 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -31.21 342.59 -8.72 -39.94 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.55 Total: 2.47 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.90 Total: -20.15 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.00 Total: -36.84 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.45 Total: -5.88 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.21 -8.72 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.281 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds