Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46920 * 2 1 4 4 C 1.52998 * 109.47066 * 240.00379 * 2 1 3 5 5 C 1.50694 * 109.47468 * 64.99509 * 4 2 1 6 6 H 1.07998 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47541 * 60.00186 * 9 7 5 11 11 H 1.48501 * 109.46995 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47095 * 299.99910 * 9 7 5 13 13 C 1.53003 * 109.47460 * 119.99999 * 2 1 3 14 14 N 1.46903 * 109.46899 * 295.00352 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.47395 * 305.00364 * 16 15 14 18 18 O 1.42897 * 109.46881 * 64.99925 * 16 15 14 19 19 C 1.50699 * 109.47053 * 184.99757 * 16 15 14 20 20 C 1.38261 * 119.98634 * 279.72959 * 19 16 15 21 21 C 1.38230 * 120.04894 * 179.73123 * 20 19 16 22 22 C 1.38220 * 120.02309 * 0.54224 * 21 20 19 23 23 C 1.38437 * 119.97780 * 359.72974 * 22 21 20 24 24 F 1.35094 * 120.03037 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98331 * 100.00446 * 19 16 15 26 26 H 1.09006 * 109.47185 * 299.99889 * 1 2 3 27 27 H 1.09001 * 109.47385 * 59.99565 * 1 2 3 28 28 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47243 * 184.99897 * 4 2 1 30 30 H 1.09004 * 109.46823 * 304.99742 * 4 2 1 31 31 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47042 * 175.00292 * 13 2 1 33 33 H 1.08995 * 109.46589 * 54.99533 * 13 2 1 34 34 H 1.00895 * 111.00497 * 56.03863 * 14 13 2 35 35 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 36 36 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 37 37 H 0.96702 * 114.00429 * 59.99915 * 18 16 15 38 38 H 1.07998 * 119.98063 * 359.97438 * 20 19 16 39 39 H 1.08002 * 119.98964 * 180.27416 * 21 20 19 40 40 H 1.08005 * 120.01384 * 179.71254 * 22 21 20 41 41 H 1.08004 * 120.01603 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3756 7 6 1.9931 -0.4017 -3.7282 8 7 2.6764 -1.5187 -3.8512 9 14 1.4994 0.5635 -5.2496 10 1 2.0915 1.9238 -5.1866 11 1 1.9944 -0.1366 -6.4621 12 1 0.0194 0.6700 -5.3095 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7024 0.1909 4.8892 17 1 2.0626 1.2142 4.7837 18 8 0.2770 0.1958 4.9897 19 6 2.2915 -0.4233 6.1329 20 6 1.6890 -1.5249 6.7116 21 6 2.2314 -2.0927 7.8492 22 6 3.3706 -1.5528 8.4159 23 6 3.9716 -0.4463 7.8405 24 9 5.0854 0.0820 8.3932 25 6 3.4305 0.1183 6.6976 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1262 -0.7994 -1.2057 30 1 1.6053 -1.7197 -1.2952 31 1 2.9236 -1.8416 -4.7318 32 1 3.1263 -0.7994 1.2055 33 1 1.6054 -1.7197 1.2951 34 1 0.6529 0.1794 2.4753 35 1 3.2117 -0.7050 3.6405 36 1 1.6904 -1.6248 3.7297 37 1 -0.1135 -0.6836 5.0861 38 1 0.7961 -1.9446 6.2723 39 1 1.7624 -2.9560 8.2979 40 1 3.7916 -1.9937 9.3074 41 1 3.8982 0.9818 6.2481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876989571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = -112.750459 kcal Electronic energy + Delta-G solvation = -21057.773022 eV Core-core repulsion = 17657.182192 eV Total energy + Delta-G solvation = -3400.590830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93656 -40.66895 -38.68147 -37.57752 -35.36403 -33.82880 -32.68090 -31.40975 -29.44080 -28.39266 -26.64432 -24.74582 -23.80156 -23.45218 -22.17388 -20.64684 -18.90933 -18.54099 -17.74117 -17.27656 -17.12991 -16.77317 -16.62994 -16.55722 -15.93986 -15.49816 -15.41612 -14.75855 -14.53376 -14.50145 -14.08847 -14.02218 -13.62499 -13.33699 -13.26045 -13.02557 -12.77985 -12.73582 -12.62178 -12.52986 -12.22208 -11.95744 -11.94960 -11.48652 -11.30461 -11.05736 -10.83647 -10.52283 -9.98424 -9.69698 -9.35365 -8.16891 -6.25961 0.10873 0.19454 1.40770 1.43475 1.51100 2.42578 2.52720 3.01555 3.16516 3.27804 3.53402 3.73976 3.80590 3.97783 4.08371 4.15962 4.20360 4.25419 4.30522 4.41835 4.48008 4.70307 4.72305 4.79506 4.88123 4.90804 5.04552 5.06206 5.13095 5.24709 5.32234 5.39848 5.46176 5.49822 5.56158 5.80504 5.88417 5.90007 6.05471 6.31977 6.51810 6.74846 6.89949 7.42281 8.94990 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.002554 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.629422 B =10960.616624 C =11251.417863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.078 3.922 14 N -0.689 5.689 15 C 0.035 3.965 16 C 0.161 3.839 17 H 0.108 0.892 18 O -0.560 6.560 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.076 3.924 24 F -0.151 7.151 25 C -0.155 4.155 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.042 0.958 29 H -0.014 1.014 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.026 0.974 34 H 0.350 0.650 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.386 0.614 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -1.406 25.975 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.052 4.052 14 N -0.322 5.322 15 C -0.094 4.094 16 C 0.101 3.899 17 H 0.126 0.874 18 O -0.367 6.367 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.103 4.103 22 C -0.176 4.176 23 C 0.057 3.943 24 F -0.130 7.130 25 C -0.174 4.174 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.004 0.996 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.236 0.764 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.249 -0.434 25.784 25.885 hybrid contribution -0.047 -0.946 -0.930 1.328 sum -2.296 -1.380 24.854 24.998 Atomic orbital electron populations 1.21644 0.94879 1.00734 1.01088 1.21022 0.96312 0.98946 0.93257 0.92679 1.19000 0.94168 0.94623 0.92665 1.21622 1.34495 1.08579 0.92112 0.92118 1.25948 0.95261 0.96104 1.02642 1.70092 1.40275 1.22960 1.24336 0.85570 0.78982 0.78752 0.78178 1.19368 1.21030 1.19122 1.21838 0.99534 0.94323 0.89462 1.60402 1.20836 1.50076 1.00867 1.22627 1.01365 0.95799 0.89645 1.20690 0.80626 1.00000 0.88566 0.87374 1.86659 1.18681 1.35498 1.95884 1.20387 0.95121 0.96466 0.97308 1.21324 1.01028 0.95144 0.96580 1.21365 0.94179 0.99874 0.94839 1.21490 0.97962 0.95787 1.02341 1.17959 0.85466 0.95997 0.94869 1.91477 1.50437 1.86059 1.84997 1.21134 0.97904 1.02330 0.96016 0.91524 0.93683 0.93907 0.99601 0.99066 0.92937 0.92587 0.95565 0.83002 0.90688 0.93650 0.76369 0.83009 0.81799 0.83031 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.77 71.98 0.63 -3.92 16 2 C -0.08 -3.12 2.54 -10.79 -0.03 -3.15 16 3 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.12 8.41 25.60 0.22 -29.90 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 9 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.08 2.61 5.14 86.30 0.44 3.06 16 14 N -0.69 -18.66 6.50 -513.89 -3.34 -22.00 16 15 C 0.04 0.74 5.34 86.31 0.46 1.20 16 16 C 0.16 2.91 3.45 29.85 0.10 3.01 16 17 H 0.11 2.21 8.00 -2.39 -0.02 2.19 16 18 O -0.56 -9.72 12.71 -148.98 -1.89 -11.61 16 19 C -0.09 -1.51 4.97 -19.87 -0.10 -1.61 16 20 C -0.12 -1.50 9.32 22.27 0.21 -1.29 16 21 C -0.08 -0.92 10.04 22.26 0.22 -0.69 16 22 C -0.16 -2.18 10.03 22.31 0.22 -1.96 16 23 C 0.08 1.42 7.30 22.38 0.16 1.58 16 24 F -0.15 -3.19 17.27 44.97 0.78 -2.42 16 25 C -0.15 -2.85 9.65 22.31 0.22 -2.64 16 26 H 0.07 1.95 6.68 -2.38 -0.02 1.94 16 27 H 0.04 1.77 6.95 -2.39 -0.02 1.76 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.35 8.95 6.54 -89.70 -0.59 8.36 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.39 3.80 7.50 -74.06 -0.56 3.25 16 38 H 0.15 1.04 6.77 -2.91 -0.02 1.02 16 39 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 2.41 8.04 -2.91 -0.02 2.38 16 Total: -1.00 -67.93 342.59 1.10 -66.83 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.11 Total: 13.78 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.36 Total: -34.11 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -3.06 Total: -79.15 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.89 Total: -11.61 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.93 1.10 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.923 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds