Wall clock time and date at job start Tue Mar 31 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47047 * 2 1 4 4 C 1.53001 * 109.46888 * 119.99108 * 2 1 3 5 5 C 1.50696 * 109.47339 * 295.00475 * 4 2 1 6 6 H 1.07999 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99921 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99748 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99833 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47546 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47194 * 120.00120 * 9 7 5 12 12 H 1.48507 * 109.47404 * 239.99970 * 9 7 5 13 13 C 1.52995 * 109.47525 * 239.99393 * 2 1 3 14 14 N 1.46906 * 109.46978 * 65.00259 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 18 18 O 1.42900 * 109.47041 * 299.99294 * 16 15 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 20 20 C 1.38261 * 119.99079 * 264.99758 * 19 16 15 21 21 C 1.38215 * 120.05556 * 180.02562 * 20 19 16 22 22 C 1.38221 * 120.02666 * 359.95547 * 21 20 19 23 23 C 1.38440 * 119.96936 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02165 * 179.97438 * 23 22 21 25 25 C 1.38184 * 119.98504 * 84.72407 * 19 16 15 26 26 H 1.09002 * 109.47437 * 300.01145 * 1 2 3 27 27 H 1.09001 * 109.46810 * 60.00462 * 1 2 3 28 28 H 1.08992 * 109.47526 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46867 * 55.00238 * 4 2 1 30 30 H 1.08998 * 109.47402 * 174.99845 * 4 2 1 31 31 H 0.97007 * 119.99801 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46859 * 305.00551 * 13 2 1 33 33 H 1.09002 * 109.47639 * 185.00219 * 13 2 1 34 34 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 37 37 H 0.96698 * 114.00516 * 300.00983 * 18 16 15 38 38 H 1.08002 * 119.96979 * 0.02562 * 20 19 16 39 39 H 1.08004 * 119.99401 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.01587 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00996 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6411 0.0573 2.4766 6 1 1.0805 0.9748 2.3756 7 6 1.9921 -0.4019 3.7285 8 7 2.6745 -1.5194 3.8514 9 14 1.4985 0.5633 5.2496 10 1 0.7419 1.7749 4.8433 11 1 0.6437 -0.2851 6.1184 12 1 2.7167 0.9673 5.9966 13 6 2.0401 -0.7213 -1.2491 14 7 1.6515 0.0373 -2.4456 15 6 2.1250 -0.6274 -3.6671 16 6 1.7027 0.1906 -4.8892 17 1 2.1374 1.1882 -4.8265 18 8 0.2779 0.2932 -4.9245 19 6 2.1890 -0.4909 -6.1422 20 6 3.3890 -0.1111 -6.7143 21 6 3.8360 -0.7349 -7.8638 22 6 3.0840 -1.7400 -8.4424 23 6 1.8824 -2.1214 -7.8703 24 9 1.1463 -3.1034 -8.4353 25 6 1.4380 -1.4991 -6.7159 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7197 1.2954 30 1 3.1262 -0.7994 1.2058 31 1 2.9217 -1.8423 4.7321 32 1 1.6054 -1.7198 -1.2949 33 1 3.1264 -0.7996 -1.2054 34 1 1.9883 0.9871 -2.3967 35 1 1.6906 -1.6252 -3.7295 36 1 3.2119 -0.7053 -3.6403 37 1 -0.1766 -0.5585 -4.9803 38 1 3.9777 0.6736 -6.2625 39 1 4.7734 -0.4372 -8.3101 40 1 3.4336 -2.2276 -9.3404 41 1 0.5030 -1.7988 -6.2661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876989572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:59 Heat of formation + Delta-G solvation = -90.517381 kcal Electronic energy + Delta-G solvation = -21085.634945 eV Core-core repulsion = 17686.008213 eV Total energy + Delta-G solvation = -3399.626732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.21312 -39.95123 -37.57842 -36.28199 -33.79447 -32.19024 -31.58705 -30.93838 -28.12479 -26.67850 -25.07410 -23.48924 -22.97747 -22.07607 -21.52215 -19.09766 -18.24406 -16.96492 -16.55215 -16.40339 -16.20963 -15.90755 -15.50667 -14.93402 -14.70953 -14.42258 -14.24993 -13.91466 -13.58977 -13.31793 -12.83768 -12.63004 -12.29130 -12.18835 -12.10805 -11.73878 -11.51991 -11.35005 -11.28211 -10.85629 -10.73853 -10.41975 -10.27600 -10.12243 -9.69504 -9.38071 -9.15018 -9.04387 -8.91406 -8.32790 -8.13864 -5.97394 -3.98284 0.74211 0.80199 3.15059 3.32454 3.40094 3.44402 3.78382 4.08159 4.26246 4.34635 4.47617 4.55332 4.68471 4.80735 4.90529 4.93362 5.06937 5.38577 5.40050 5.49541 5.57101 5.65829 5.70832 5.75358 5.87588 5.91300 6.11137 6.16076 6.41341 6.48279 6.55084 6.71017 7.01068 7.18994 7.21130 7.31612 7.46015 7.63033 7.70384 7.85706 8.03046 8.47254 9.08435 9.65170 11.14236 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037127 B = 0.002535 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.977057 B =11041.795937 C =11107.952953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.677 5.677 15 C 0.031 3.969 16 C 0.151 3.849 17 H 0.109 0.891 18 O -0.539 6.539 19 C -0.083 4.083 20 C -0.121 4.121 21 C -0.088 4.088 22 C -0.157 4.157 23 C 0.101 3.899 24 F -0.140 7.140 25 C -0.145 4.145 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.339 0.661 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.373 0.627 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 0.865 -24.956 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.308 5.308 15 C -0.099 4.099 16 C 0.091 3.909 17 H 0.127 0.873 18 O -0.344 6.344 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.176 4.176 23 C 0.082 3.918 24 F -0.118 7.118 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.221 0.779 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.921 1.059 -24.834 24.874 hybrid contribution 0.664 -0.317 0.791 1.080 sum 1.584 0.742 -24.043 24.107 Atomic orbital electron populations 1.21586 0.95624 1.00527 1.00282 1.21192 0.96102 0.98879 0.93892 0.92816 1.19131 0.95863 0.95598 0.90503 1.21280 1.34458 1.08257 0.90957 0.92480 1.25030 0.95364 0.95107 0.99133 1.69978 1.39252 1.21258 1.23253 0.86572 0.78234 0.80152 0.83265 1.19726 1.21086 1.21128 1.22177 0.97089 0.97726 0.89465 1.60436 1.63914 1.05610 1.00859 1.22622 0.98155 0.98529 0.90587 1.20841 0.82236 0.99001 0.88843 0.87286 1.86652 1.16542 1.34720 1.96440 1.20525 0.94872 0.95557 0.97450 1.21097 0.95920 1.00746 0.96171 1.21023 0.99480 0.94841 0.95265 1.21183 0.94404 1.00033 1.01984 1.17659 0.91279 0.88947 0.93897 1.91515 1.76340 1.59639 1.84317 1.20885 1.01800 0.97766 0.95962 0.92813 0.93715 0.94262 0.96579 0.96984 0.93169 0.91618 0.95829 0.84376 0.90733 0.94484 0.77925 0.85054 0.84798 0.84737 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.08 5.07 -3.82 -0.02 1.06 16 14 N -0.68 -9.35 5.82 -113.78 -0.66 -10.01 16 15 C 0.03 0.34 5.33 -3.82 -0.02 0.32 16 16 C 0.15 1.45 3.42 -27.88 -0.10 1.35 16 17 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 18 O -0.54 -5.92 13.00 -35.23 -0.46 -6.37 16 19 C -0.08 -0.73 5.00 -104.63 -0.52 -1.26 16 20 C -0.12 -0.93 9.68 -39.58 -0.38 -1.31 16 21 C -0.09 -0.61 10.04 -39.60 -0.40 -1.01 16 22 C -0.16 -1.23 10.03 -39.51 -0.40 -1.63 16 23 C 0.10 0.95 7.30 -39.42 -0.29 0.67 16 24 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 25 C -0.15 -1.31 9.31 -39.51 -0.37 -1.68 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.47 8.73 -39.29 -0.34 4.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.37 3.14 7.40 45.56 0.34 3.48 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.14 1.04 6.62 -52.49 -0.35 0.69 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -31.47 345.28 -8.75 -40.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.69 Total: 2.04 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.90 Total: -20.08 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.07 Total: -36.35 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.46 Total: -6.37 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.47 -8.75 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.299 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds