Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47672 * 2 1 4 4 C 1.53002 * 109.47348 * 239.99643 * 2 1 3 5 5 C 1.50698 * 109.46885 * 65.00022 * 4 2 1 6 6 H 1.08005 * 120.00083 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00240 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47167 * 60.00134 * 9 7 5 11 11 H 1.48499 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46799 * 300.00085 * 9 7 5 13 13 C 1.53005 * 109.46744 * 120.00307 * 2 1 3 14 14 N 1.46900 * 109.47052 * 294.99346 * 13 2 1 15 15 C 1.46904 * 111.00434 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47401 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47053 * 60.00127 * 16 15 14 18 18 O 1.42903 * 109.46831 * 299.99991 * 16 15 14 19 19 C 1.50696 * 109.46852 * 179.97438 * 16 15 14 20 20 C 1.38265 * 119.99038 * 264.99942 * 19 16 15 21 21 C 1.38217 * 120.05343 * 179.72464 * 20 19 16 22 22 C 1.38216 * 120.02581 * 0.02562 * 21 20 19 23 23 C 1.38443 * 119.97557 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.02540 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98309 * 84.72871 * 19 16 15 26 26 H 1.08994 * 109.47052 * 59.99821 * 1 2 3 27 27 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47284 * 300.00256 * 1 2 3 29 29 H 1.08993 * 109.47708 * 185.00416 * 4 2 1 30 30 H 1.09008 * 109.46997 * 305.00577 * 4 2 1 31 31 H 0.96998 * 120.00217 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46821 * 174.99914 * 13 2 1 33 33 H 1.08996 * 109.47404 * 54.99721 * 13 2 1 34 34 H 1.00905 * 110.99849 * 56.05094 * 14 13 2 35 35 H 1.09007 * 109.46532 * 60.00491 * 15 14 13 36 36 H 1.08998 * 109.46831 * 300.00863 * 15 14 13 37 37 H 0.96695 * 113.99979 * 299.99939 * 18 16 15 38 38 H 1.07997 * 119.96948 * 359.70295 * 20 19 16 39 39 H 1.08000 * 119.99075 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.01835 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.01438 * 0.29295 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4997 0.5633 -5.2496 10 1 2.0919 1.9236 -5.1866 11 1 1.9947 -0.1368 -6.4621 12 1 0.0198 0.6698 -5.3096 13 6 2.0399 -0.7214 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1256 -0.6266 3.6673 16 6 1.7023 0.1909 4.8893 17 1 0.6153 0.2678 4.9162 18 8 2.2705 1.4995 4.8071 19 6 2.1883 -0.4906 6.1424 20 6 1.3495 -1.3444 6.8346 21 6 1.7958 -1.9746 7.9809 22 6 3.0813 -1.7514 8.4369 23 6 3.9222 -0.8968 7.7448 24 9 5.1791 -0.6783 8.1893 25 6 3.4741 -0.2663 6.5961 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2951 31 1 2.9244 -1.8414 -4.7316 32 1 3.1263 -0.7996 1.2056 33 1 1.6052 -1.7198 1.2952 34 1 0.6528 0.1793 2.4753 35 1 3.2126 -0.7038 3.6401 36 1 1.6920 -1.6246 3.7301 37 1 3.2371 1.5075 4.7793 38 1 0.3446 -1.5187 6.4793 39 1 1.1398 -2.6416 8.5205 40 1 3.4301 -2.2443 9.3325 41 1 4.1290 0.4010 6.0555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876989573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -90.141169 kcal Electronic energy + Delta-G solvation = -21078.771855 eV Core-core repulsion = 17679.161437 eV Total energy + Delta-G solvation = -3399.610418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.20999 -39.95120 -37.60543 -36.34273 -33.76883 -32.19470 -31.57390 -30.93558 -28.11927 -26.74766 -25.21458 -23.53807 -22.97898 -22.01671 -21.50490 -18.98091 -18.24132 -17.01334 -16.54965 -16.53788 -16.18929 -15.90344 -15.51668 -14.95978 -14.73508 -14.45366 -14.23747 -13.96812 -13.47927 -13.18547 -12.83679 -12.82796 -12.29818 -12.22070 -12.09386 -11.79080 -11.66706 -11.37297 -11.29218 -10.87174 -10.74510 -10.42636 -10.28821 -10.14353 -9.71434 -9.38449 -9.15358 -9.04432 -8.93884 -8.32009 -8.16217 -5.96823 -3.98013 0.74328 0.80371 3.15147 3.35367 3.39602 3.42287 3.78708 4.08437 4.26489 4.34771 4.47869 4.55597 4.68526 4.80843 4.90574 4.93480 5.06982 5.38916 5.40119 5.49151 5.57986 5.66275 5.72880 5.76035 5.81725 5.90923 6.05423 6.11322 6.24080 6.45686 6.48540 6.55395 6.92194 7.11140 7.17302 7.30712 7.46537 7.63402 7.70373 7.86307 8.03334 8.47197 9.08176 9.65353 11.14726 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002556 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.722345 B =10951.049385 C =11117.473834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.680 5.680 15 C 0.031 3.969 16 C 0.150 3.850 17 H 0.109 0.891 18 O -0.539 6.539 19 C -0.083 4.083 20 C -0.121 4.121 21 C -0.088 4.088 22 C -0.157 4.157 23 C 0.102 3.898 24 F -0.139 7.139 25 C -0.145 4.145 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.339 0.661 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.373 0.627 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -0.913 24.988 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.312 5.312 15 C -0.099 4.099 16 C 0.090 3.910 17 H 0.127 0.873 18 O -0.344 6.344 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.176 4.176 23 C 0.082 3.918 24 F -0.118 7.118 25 C -0.164 4.164 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.221 0.779 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.403 -0.423 24.832 24.875 hybrid contribution 0.053 -0.629 -0.739 0.972 sum -1.350 -1.052 24.093 24.154 Atomic orbital electron populations 1.21741 0.96676 1.00373 1.00357 1.21219 0.94883 1.00157 0.94018 0.91533 1.19106 0.96109 0.95337 0.90379 1.21206 1.34704 1.08270 0.90988 0.92587 1.25021 0.95328 0.95095 0.99104 1.69953 1.39041 1.21257 1.23493 0.86684 0.78856 0.80165 0.82453 1.20242 1.21391 1.20308 1.22164 1.00341 0.94357 0.89545 1.60480 1.19750 1.50180 1.00796 1.22626 1.01382 0.95486 0.90442 1.20841 0.98566 0.82712 0.88833 0.87332 1.86651 1.25304 1.26045 1.96376 1.20519 0.93372 0.97052 0.97452 1.21093 1.00224 0.97138 0.95494 1.21019 0.94910 0.98709 0.95974 1.21184 0.94689 1.00164 1.01566 1.17659 0.80161 0.98891 0.95051 1.91514 1.37826 1.93556 1.88896 1.20891 0.96869 1.02017 0.96624 0.91831 0.94084 0.94900 0.96699 0.96800 0.93043 0.91533 0.95886 0.84176 0.90674 0.94493 0.77875 0.85069 0.84801 0.84734 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 14 N -0.68 -9.62 6.37 -113.77 -0.72 -10.35 16 15 C 0.03 0.35 5.33 -3.82 -0.02 0.33 16 16 C 0.15 1.47 3.42 -27.89 -0.10 1.37 16 17 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 18 O -0.54 -6.04 13.00 -35.23 -0.46 -6.50 16 19 C -0.08 -0.74 5.00 -104.63 -0.52 -1.26 16 20 C -0.12 -0.93 9.68 -39.58 -0.38 -1.32 16 21 C -0.09 -0.61 10.04 -39.60 -0.40 -1.01 16 22 C -0.16 -1.24 10.03 -39.51 -0.40 -1.63 16 23 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 25 C -0.15 -1.33 9.31 -39.51 -0.37 -1.69 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.58 6.98 -39.29 -0.27 4.30 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.37 3.22 7.40 45.56 0.34 3.56 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.14 1.06 6.62 -52.49 -0.35 0.71 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -31.42 343.02 -8.73 -40.15 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.57 Total: 2.69 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.91 Total: -20.16 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.01 Total: -36.68 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.46 Total: -6.50 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.42 -8.73 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.993 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds