Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47672 * 2 1 4 4 C 1.53002 * 109.47348 * 239.99643 * 2 1 3 5 5 C 1.50698 * 109.46885 * 65.00022 * 4 2 1 6 6 H 1.08005 * 120.00083 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00240 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47167 * 60.00134 * 9 7 5 11 11 H 1.48499 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46799 * 300.00085 * 9 7 5 13 13 C 1.53005 * 109.46744 * 120.00307 * 2 1 3 14 14 N 1.46900 * 109.47052 * 294.99346 * 13 2 1 15 15 C 1.46904 * 111.00434 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47401 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47053 * 60.00127 * 16 15 14 18 18 O 1.42903 * 109.46831 * 299.99991 * 16 15 14 19 19 C 1.50696 * 109.46852 * 179.97438 * 16 15 14 20 20 C 1.38265 * 119.99038 * 264.99942 * 19 16 15 21 21 C 1.38217 * 120.05343 * 179.72464 * 20 19 16 22 22 C 1.38216 * 120.02581 * 0.02562 * 21 20 19 23 23 C 1.38443 * 119.97557 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.02540 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98309 * 84.72871 * 19 16 15 26 26 H 1.08994 * 109.47052 * 59.99821 * 1 2 3 27 27 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47284 * 300.00256 * 1 2 3 29 29 H 1.08993 * 109.47708 * 185.00416 * 4 2 1 30 30 H 1.09008 * 109.46997 * 305.00577 * 4 2 1 31 31 H 0.96998 * 120.00217 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46821 * 174.99914 * 13 2 1 33 33 H 1.08996 * 109.47404 * 54.99721 * 13 2 1 34 34 H 1.00905 * 110.99849 * 56.05094 * 14 13 2 35 35 H 1.09007 * 109.46532 * 60.00491 * 15 14 13 36 36 H 1.08998 * 109.46831 * 300.00863 * 15 14 13 37 37 H 0.96695 * 113.99979 * 299.99939 * 18 16 15 38 38 H 1.07997 * 119.96948 * 359.70295 * 20 19 16 39 39 H 1.08000 * 119.99075 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.01835 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.01438 * 0.29295 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4997 0.5633 -5.2496 10 1 2.0919 1.9236 -5.1866 11 1 1.9947 -0.1368 -6.4621 12 1 0.0198 0.6698 -5.3096 13 6 2.0399 -0.7214 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1256 -0.6266 3.6673 16 6 1.7023 0.1909 4.8893 17 1 0.6153 0.2678 4.9162 18 8 2.2705 1.4995 4.8071 19 6 2.1883 -0.4906 6.1424 20 6 1.3495 -1.3444 6.8346 21 6 1.7958 -1.9746 7.9809 22 6 3.0813 -1.7514 8.4369 23 6 3.9222 -0.8968 7.7448 24 9 5.1791 -0.6783 8.1893 25 6 3.4741 -0.2663 6.5961 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2951 31 1 2.9244 -1.8414 -4.7316 32 1 3.1263 -0.7996 1.2056 33 1 1.6052 -1.7198 1.2952 34 1 0.6528 0.1793 2.4753 35 1 3.2126 -0.7038 3.6401 36 1 1.6920 -1.6246 3.7301 37 1 3.2371 1.5075 4.7793 38 1 0.3446 -1.5187 6.4793 39 1 1.1398 -2.6416 8.5205 40 1 3.4301 -2.2443 9.3325 41 1 4.1290 0.4010 6.0555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876989573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = -110.839905 kcal Electronic energy + Delta-G solvation = -21079.669420 eV Core-core repulsion = 17679.161437 eV Total energy + Delta-G solvation = -3400.507983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93292 -40.62807 -38.64588 -37.55274 -35.38279 -33.82292 -32.50234 -31.55976 -29.41830 -28.38616 -26.61760 -24.77611 -23.77181 -23.36492 -22.24723 -20.63892 -18.95106 -18.54203 -17.74588 -17.18992 -17.13896 -16.67200 -16.62265 -16.45730 -15.86539 -15.63006 -15.40996 -14.81799 -14.57165 -14.47978 -14.02774 -13.98388 -13.65161 -13.34422 -13.26391 -12.99297 -12.84390 -12.74639 -12.56223 -12.36794 -12.22609 -12.03991 -11.94286 -11.48555 -11.24114 -11.05483 -10.80875 -10.52425 -9.97642 -9.68167 -9.31208 -8.16966 -6.26067 0.11764 0.19973 1.40684 1.43459 1.51079 2.42536 2.53167 3.02587 3.16445 3.30775 3.53706 3.75628 3.78202 3.98951 4.08697 4.15962 4.24827 4.27503 4.29992 4.41589 4.48506 4.66555 4.77084 4.80531 4.85304 4.89235 5.04749 5.06799 5.13131 5.24858 5.32899 5.39916 5.47205 5.50117 5.56197 5.80659 5.89119 5.90086 6.05553 6.31882 6.49506 6.78533 6.89915 7.42189 8.94957 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002556 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.722345 B =10951.049385 C =11117.473834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.078 3.922 14 N -0.682 5.682 15 C 0.033 3.967 16 C 0.160 3.840 17 H 0.119 0.881 18 O -0.556 6.556 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.086 4.086 22 C -0.158 4.158 23 C 0.076 3.924 24 F -0.151 7.151 25 C -0.156 4.156 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.068 0.932 29 H -0.015 1.015 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.382 0.618 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -0.595 26.115 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.051 4.051 14 N -0.314 5.314 15 C -0.096 4.096 16 C 0.100 3.900 17 H 0.136 0.864 18 O -0.363 6.363 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.104 4.104 22 C -0.177 4.177 23 C 0.057 3.943 24 F -0.130 7.130 25 C -0.174 4.174 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.166 0.834 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.231 0.769 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.029 -0.095 25.981 26.157 hybrid contribution 0.575 -0.762 -1.023 1.399 sum -2.453 -0.857 24.958 25.093 Atomic orbital electron populations 1.21647 0.94858 1.00716 1.01157 1.21011 0.96331 0.98922 0.93191 0.92673 1.19003 0.94139 0.94604 0.92729 1.21625 1.34494 1.08566 0.92101 0.92100 1.25954 0.95266 0.96102 1.02661 1.70091 1.40279 1.22978 1.24343 0.85566 0.78987 0.78753 0.78157 1.19350 1.21041 1.19108 1.21837 0.99486 0.94240 0.89561 1.60376 1.20295 1.50051 1.00713 1.22662 1.01136 0.96073 0.89770 1.20768 0.98954 0.81898 0.88353 0.86371 1.86614 1.26270 1.27019 1.96408 1.20459 0.93533 0.97900 0.97500 1.21422 1.00946 0.96236 0.95403 1.21378 0.94781 0.98531 0.95696 1.21488 0.94904 0.99446 1.01862 1.17938 0.80206 1.00227 0.95889 1.91480 1.38623 1.93799 1.89078 1.21019 0.97314 1.02288 0.96817 0.93707 0.93947 0.91361 0.99657 0.99129 0.92942 0.92700 0.95714 0.83430 0.91156 0.93546 0.76910 0.83001 0.81865 0.83099 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.08 -3.08 2.55 -10.79 -0.03 -3.11 16 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.13 8.41 25.60 0.22 -29.92 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.08 2.62 5.14 86.30 0.44 3.07 16 14 N -0.68 -18.24 6.37 -513.86 -3.27 -21.51 16 15 C 0.03 0.70 5.33 86.30 0.46 1.16 16 16 C 0.16 2.83 3.42 29.85 0.10 2.93 16 17 H 0.12 1.86 8.05 -2.39 -0.02 1.84 16 18 O -0.56 -11.79 13.00 -148.98 -1.94 -13.73 16 19 C -0.09 -1.50 5.00 -19.87 -0.10 -1.60 16 20 C -0.12 -1.55 9.68 22.27 0.22 -1.34 16 21 C -0.09 -0.95 10.04 22.26 0.22 -0.73 16 22 C -0.16 -2.21 10.03 22.31 0.22 -1.98 16 23 C 0.08 1.40 7.30 22.38 0.16 1.56 16 24 F -0.15 -3.16 17.27 44.97 0.78 -2.38 16 25 C -0.16 -2.74 9.31 22.31 0.21 -2.53 16 26 H 0.04 1.75 6.95 -2.39 -0.02 1.74 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 29 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.95 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.35 8.46 6.98 -89.69 -0.63 7.84 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.38 6.37 7.40 -74.06 -0.55 5.82 16 38 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.14 2.17 6.62 -2.91 -0.02 2.15 16 Total: -1.00 -68.18 343.02 1.09 -67.09 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -0.14 Total: 15.30 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.35 Total: -34.21 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -2.99 Total: -78.79 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.94 Total: -13.73 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.18 1.09 -67.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.753 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds