Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47044 * 89.99576 * 9 7 5 11 11 H 1.48491 * 109.47429 * 209.99668 * 9 7 5 12 12 H 1.48497 * 109.46794 * 330.00036 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47289 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.46191 * 304.99814 * 16 15 14 18 18 O 1.42898 * 109.46871 * 64.99388 * 16 15 14 19 19 C 1.50699 * 109.47223 * 185.00114 * 16 15 14 20 20 C 1.38271 * 119.98210 * 279.72438 * 19 16 15 21 21 C 1.38225 * 120.04908 * 179.72588 * 20 19 16 22 22 C 1.38220 * 120.02163 * 0.54838 * 21 20 19 23 23 C 1.38441 * 119.97925 * 359.72379 * 22 21 20 24 24 F 1.35096 * 120.02969 * 180.02562 * 23 22 21 25 25 C 1.38170 * 119.98865 * 99.99778 * 19 16 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 31 31 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 33 33 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 34 34 H 1.00896 * 110.99608 * 56.04490 * 14 13 2 35 35 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 36 36 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 37 37 H 0.96701 * 113.99875 * 60.00559 * 18 16 15 38 38 H 1.07999 * 119.97713 * 359.97438 * 20 19 16 39 39 H 1.07999 * 119.98955 * 180.27067 * 21 20 19 40 40 H 1.08008 * 120.01301 * 179.70418 * 22 21 20 41 41 H 1.07998 * 120.01820 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.1709 0.0956 5.7231 11 1 2.5076 0.3522 6.3186 12 1 1.4248 2.0082 4.9166 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 0.6237 0.3446 -4.8683 18 8 2.3647 1.4571 -4.8667 19 6 2.0800 -0.5512 -6.1454 20 6 3.3807 -0.5029 -6.6120 21 6 3.7297 -1.1877 -7.7609 22 6 2.7760 -1.9123 -8.4508 23 6 1.4721 -1.9567 -7.9876 24 9 0.5393 -2.6651 -8.6607 25 6 1.1250 -1.2749 -6.8333 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9213 -1.8429 4.7319 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9882 0.9873 -2.3966 35 1 3.2118 -0.7051 -3.6405 36 1 1.6905 -1.6250 -3.7296 37 1 3.3297 1.3967 -4.8834 38 1 4.1254 0.0670 -6.0763 39 1 4.7469 -1.1529 -8.1222 40 1 3.0478 -2.4434 -9.3511 41 1 0.1080 -1.3085 -6.4713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876989574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -92.557074 kcal Electronic energy + Delta-G solvation = -21045.991169 eV Core-core repulsion = 17646.275990 eV Total energy + Delta-G solvation = -3399.715180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.21079 -39.99054 -37.65013 -36.29765 -33.78510 -32.31113 -31.66911 -30.78522 -28.16061 -26.69435 -25.08387 -23.36873 -23.19024 -22.07437 -21.43868 -19.11813 -18.22508 -16.94966 -16.58448 -16.44985 -16.25410 -15.90584 -15.68092 -15.03454 -14.63523 -14.37082 -14.14012 -14.01653 -13.49698 -13.41500 -12.84889 -12.61073 -12.36139 -12.14958 -12.07357 -11.92763 -11.53395 -11.36047 -11.21523 -10.82948 -10.75899 -10.51741 -10.27926 -10.18434 -9.69602 -9.37848 -9.15296 -9.05776 -8.92939 -8.32459 -8.17591 -5.97256 -3.98319 0.73371 0.80399 3.14578 3.33620 3.39838 3.43264 3.77409 4.05697 4.19917 4.38665 4.47243 4.55110 4.66306 4.78031 4.87289 5.02640 5.05002 5.37796 5.38680 5.52144 5.57797 5.66450 5.72771 5.73307 5.87051 5.91142 6.11869 6.15290 6.40450 6.48119 6.54270 6.69317 7.00251 7.18174 7.19822 7.29728 7.33772 7.63633 7.70186 7.85518 8.03019 8.47097 9.08156 9.65123 11.14332 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002521 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.570006 B =11102.477370 C =11183.714522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.033 3.967 16 C 0.148 3.852 17 H 0.120 0.880 18 O -0.549 6.549 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.157 4.157 23 C 0.100 3.900 24 F -0.139 7.139 25 C -0.142 4.142 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.371 0.629 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 0.631 -24.829 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.097 4.097 16 C 0.088 3.912 17 H 0.138 0.862 18 O -0.354 6.354 19 C -0.083 4.083 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.175 4.175 23 C 0.081 3.919 24 F -0.118 7.118 25 C -0.161 4.161 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.219 0.781 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.519 0.424 -24.731 24.740 hybrid contribution 1.188 0.070 0.775 1.420 sum 1.707 0.494 -23.956 24.022 Atomic orbital electron populations 1.21591 0.95685 1.00544 1.00216 1.21196 0.96055 0.98944 0.93923 0.92763 1.19125 0.95874 0.95582 0.90465 1.21241 1.34539 1.08286 0.90972 0.92532 1.25025 0.95331 0.95119 0.99117 1.69966 1.39169 1.21267 1.23360 0.86624 0.78224 0.80440 0.82905 1.20703 1.21331 1.19898 1.22170 0.97134 0.97710 0.89434 1.60460 1.63919 1.06167 1.00965 1.22588 0.97755 0.98774 0.90551 1.20967 0.98777 0.82513 0.88904 0.86239 1.86686 1.23451 1.28612 1.96677 1.20465 0.93497 0.97158 0.97212 1.20977 0.95782 1.00252 0.97134 1.20988 0.99365 0.95583 0.94583 1.21184 0.91801 1.02501 1.02058 1.17696 0.86628 0.94986 0.92578 1.91512 1.64698 1.76255 1.79327 1.21025 1.01146 0.99069 0.94831 0.94198 0.93885 0.92750 0.96576 0.96966 0.93108 0.95806 0.91590 0.83724 0.95096 0.90134 0.78127 0.85441 0.84814 0.84726 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.67 2.48 -90.63 -0.22 -1.90 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 1.08 5.07 -3.82 -0.02 1.06 16 14 N -0.68 -9.53 5.96 -113.77 -0.68 -10.20 16 15 C 0.03 0.37 5.34 -3.82 -0.02 0.35 16 16 C 0.15 1.43 3.45 -27.88 -0.10 1.33 16 17 H 0.12 1.24 8.00 -51.93 -0.42 0.82 16 18 O -0.55 -5.40 12.71 -35.23 -0.45 -5.84 16 19 C -0.08 -0.73 4.97 -104.64 -0.52 -1.25 16 20 C -0.12 -0.93 9.32 -39.57 -0.37 -1.29 16 21 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 22 C -0.16 -1.23 10.03 -39.51 -0.40 -1.62 16 23 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 25 C -0.14 -1.31 9.65 -39.52 -0.38 -1.69 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.34 4.73 8.29 -39.29 -0.33 4.41 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.37 2.42 7.49 45.56 0.34 2.76 16 38 H 0.13 0.69 6.77 -52.49 -0.36 0.33 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 1.15 8.04 -52.49 -0.42 0.73 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -31.24 344.85 -8.74 -39.98 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.67 Total: 1.92 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.89 Total: -20.04 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.06 Total: -36.54 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.45 Total: -5.84 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.24 -8.74 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.577 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds