Wall clock time and date at job start Tue Mar 31 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47044 * 89.99576 * 9 7 5 11 11 H 1.48491 * 109.47429 * 209.99668 * 9 7 5 12 12 H 1.48497 * 109.46794 * 330.00036 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47289 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.46191 * 304.99814 * 16 15 14 18 18 O 1.42898 * 109.46871 * 64.99388 * 16 15 14 19 19 C 1.50699 * 109.47223 * 185.00114 * 16 15 14 20 20 C 1.38271 * 119.98210 * 279.72438 * 19 16 15 21 21 C 1.38225 * 120.04908 * 179.72588 * 20 19 16 22 22 C 1.38220 * 120.02163 * 0.54838 * 21 20 19 23 23 C 1.38441 * 119.97925 * 359.72379 * 22 21 20 24 24 F 1.35096 * 120.02969 * 180.02562 * 23 22 21 25 25 C 1.38170 * 119.98865 * 99.99778 * 19 16 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 31 31 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 33 33 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 34 34 H 1.00896 * 110.99608 * 56.04490 * 14 13 2 35 35 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 36 36 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 37 37 H 0.96701 * 113.99875 * 60.00559 * 18 16 15 38 38 H 1.07999 * 119.97713 * 359.97438 * 20 19 16 39 39 H 1.07999 * 119.98955 * 180.27067 * 21 20 19 40 40 H 1.08008 * 120.01301 * 179.70418 * 22 21 20 41 41 H 1.07998 * 120.01820 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.1709 0.0956 5.7231 11 1 2.5076 0.3522 6.3186 12 1 1.4248 2.0082 4.9166 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 0.6237 0.3446 -4.8683 18 8 2.3647 1.4571 -4.8667 19 6 2.0800 -0.5512 -6.1454 20 6 3.3807 -0.5029 -6.6120 21 6 3.7297 -1.1877 -7.7609 22 6 2.7760 -1.9123 -8.4508 23 6 1.4721 -1.9567 -7.9876 24 9 0.5393 -2.6651 -8.6607 25 6 1.1250 -1.2749 -6.8333 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9213 -1.8429 4.7319 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9882 0.9873 -2.3966 35 1 3.2118 -0.7051 -3.6405 36 1 1.6905 -1.6250 -3.7296 37 1 3.3297 1.3967 -4.8834 38 1 4.1254 0.0670 -6.0763 39 1 4.7469 -1.1529 -8.1222 40 1 3.0478 -2.4434 -9.3511 41 1 0.1080 -1.3085 -6.4713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876989574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:02 Heat of formation + Delta-G solvation = -112.867615 kcal Electronic energy + Delta-G solvation = -21046.871900 eV Core-core repulsion = 17646.275990 eV Total energy + Delta-G solvation = -3400.595911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93376 -40.66094 -38.62385 -37.55213 -35.36725 -33.83949 -32.69050 -31.40839 -29.41935 -28.40594 -26.48715 -24.74051 -23.80033 -23.45728 -22.18635 -20.76891 -18.90730 -18.48011 -17.69122 -17.22695 -17.11047 -16.65748 -16.62382 -16.57176 -15.96117 -15.60807 -15.32630 -14.79194 -14.67780 -14.42863 -14.09315 -13.97234 -13.51808 -13.30775 -13.13157 -13.06026 -12.79028 -12.70926 -12.61349 -12.54104 -12.20134 -11.99982 -11.93003 -11.48105 -11.27474 -11.07667 -10.82242 -10.52909 -9.98262 -9.69544 -9.32707 -8.17131 -6.26064 0.10967 0.19650 1.40830 1.41676 1.52669 2.42468 2.52859 3.01927 3.16389 3.28154 3.54041 3.74343 3.80884 3.97956 4.08633 4.17647 4.18713 4.23221 4.35980 4.42424 4.54717 4.70465 4.74382 4.88691 4.90729 4.95536 5.03819 5.06190 5.13163 5.29248 5.32516 5.46439 5.47528 5.51944 5.56828 5.82022 5.88488 5.89775 6.03946 6.32054 6.50741 6.74916 6.90113 7.42252 8.94971 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002521 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.570006 B =11102.477370 C =11183.714522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.683 5.683 15 C 0.036 3.964 16 C 0.161 3.839 17 H 0.110 0.890 18 O -0.560 6.560 19 C -0.092 4.092 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.076 3.924 24 F -0.151 7.151 25 C -0.154 4.154 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.037 0.963 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 1.805 -25.730 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.315 5.315 15 C -0.093 4.093 16 C 0.102 3.898 17 H 0.128 0.872 18 O -0.368 6.368 19 C -0.093 4.093 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.176 4.176 23 C 0.057 3.943 24 F -0.129 7.129 25 C -0.173 4.173 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.057 1.609 -25.654 25.726 hybrid contribution 1.073 -0.308 0.996 1.495 sum 2.130 1.301 -24.658 24.784 Atomic orbital electron populations 1.21493 0.94802 1.00316 1.00510 1.21010 0.96653 0.98466 0.93189 0.92747 1.19019 0.94143 0.94657 0.92740 1.21649 1.34328 1.08573 0.92099 0.92114 1.25950 0.95275 0.96124 1.02650 1.70098 1.40382 1.22955 1.24262 0.85513 0.77981 0.79318 0.78655 1.19960 1.20901 1.18736 1.21848 0.96665 0.97253 0.89375 1.60359 1.64181 1.06183 1.00756 1.22618 0.98391 0.98581 0.89748 1.20696 0.98291 0.82307 0.88543 0.87228 1.86660 1.24909 1.28566 1.96645 1.20398 0.94216 0.97597 0.97072 1.21322 0.95581 0.99930 0.97317 1.21357 1.00489 0.94473 0.93990 1.21488 0.91206 1.02304 1.02608 1.17956 0.87311 0.95880 0.93122 1.91478 1.65250 1.76642 1.79580 1.21130 1.01534 0.99471 0.95156 0.94684 0.91478 0.94405 0.99244 0.99453 0.92948 0.96130 0.92138 0.83323 0.93922 0.90556 0.76414 0.83131 0.81883 0.83053 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -3.01 2.48 -10.80 -0.03 -3.04 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.97 8.41 25.60 0.22 -29.75 16 6 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 13 C 0.08 2.59 5.07 86.30 0.44 3.03 16 14 N -0.68 -18.04 5.96 -513.87 -3.06 -21.10 16 15 C 0.04 0.75 5.34 86.30 0.46 1.21 16 16 C 0.16 2.86 3.45 29.85 0.10 2.97 16 17 H 0.11 2.17 8.00 -2.39 -0.02 2.15 16 18 O -0.56 -9.79 12.71 -148.98 -1.89 -11.68 16 19 C -0.09 -1.49 4.97 -19.87 -0.10 -1.59 16 20 C -0.12 -1.53 9.32 22.27 0.21 -1.32 16 21 C -0.09 -0.93 10.04 22.26 0.22 -0.71 16 22 C -0.16 -2.18 10.03 22.31 0.22 -1.96 16 23 C 0.08 1.40 7.30 22.38 0.16 1.57 16 24 F -0.15 -3.15 17.27 44.97 0.78 -2.37 16 25 C -0.15 -2.78 9.65 22.31 0.22 -2.57 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 28 H 0.04 1.55 6.95 -2.38 -0.02 1.53 16 29 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.35 8.92 8.29 -89.70 -0.74 8.17 16 35 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 37 H 0.39 3.95 7.49 -74.06 -0.56 3.40 16 38 H 0.15 1.09 6.77 -2.91 -0.02 1.07 16 39 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 2.35 8.04 -2.91 -0.02 2.32 16 Total: -1.00 -67.40 344.85 1.23 -66.18 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.27 Total: 13.22 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.36 Total: -33.79 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.78 Total: -78.19 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.89 Total: -11.68 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.40 1.23 -66.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876989574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.692 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds