Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36061 * 116.99426 * 2 1 4 4 C 1.38623 * 119.99116 * 359.97438 * 3 2 1 5 5 C 1.38152 * 120.04518 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01738 * 0.30326 * 5 4 3 7 7 N 1.39926 * 120.01058 * 179.69751 * 6 5 4 8 8 C 1.46496 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.46498 * 119.99978 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47237 * 90.00085 * 9 7 6 11 11 H 1.09005 * 109.46906 * 305.00306 * 10 9 7 12 12 C 1.53002 * 109.46893 * 64.99741 * 10 9 7 13 13 C 1.52993 * 109.47377 * 184.99977 * 10 9 7 14 14 C 1.50704 * 109.47225 * 175.00134 * 13 10 9 15 15 H 1.08004 * 119.99993 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00172 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00325 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47325 * 59.99790 * 18 16 14 20 20 H 1.48497 * 109.47332 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47012 * 300.00029 * 18 16 14 22 22 C 1.38849 * 119.97351 * 359.42159 * 6 5 4 23 23 C 1.38282 * 119.96017 * 0.55330 * 22 6 5 24 24 F 1.35103 * 120.01378 * 179.72031 * 23 22 6 25 25 H 1.09004 * 109.47435 * 299.99334 * 1 2 3 26 26 H 1.09000 * 109.47752 * 60.00047 * 1 2 3 27 27 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.98163 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.98880 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47693 * 89.99652 * 8 7 6 31 31 H 1.09001 * 109.47125 * 210.00033 * 8 7 6 32 32 H 1.09008 * 109.47028 * 329.99365 * 8 7 6 33 33 H 1.09000 * 109.47405 * 209.99765 * 9 7 6 34 34 H 1.08999 * 109.47531 * 330.00201 * 9 7 6 35 35 H 1.09004 * 109.47313 * 180.02562 * 12 10 9 36 36 H 1.08999 * 109.47219 * 300.00493 * 12 10 9 37 37 H 1.09005 * 109.46883 * 60.00550 * 12 10 9 38 38 H 1.08997 * 109.47342 * 295.00170 * 13 10 9 39 39 H 1.08999 * 109.47271 * 55.00594 * 13 10 9 40 40 H 0.96991 * 120.00134 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.01962 * 180.29303 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2124 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9172 3.6064 0.0000 6 6 3.3038 3.6809 -0.0053 7 7 3.9376 4.9284 -0.0111 8 6 3.1383 6.1561 -0.0111 9 6 5.4004 5.0068 -0.0162 10 6 5.9050 5.0297 -1.4604 11 1 5.5142 4.1642 -1.9956 12 6 5.4286 6.3115 -2.1468 13 6 7.4343 4.9858 -1.4671 14 6 7.9277 4.8845 -2.8875 15 1 7.2212 4.8549 -3.7038 16 6 9.2811 4.8296 -3.1449 17 7 10.1416 4.8661 -2.1510 18 14 9.8927 4.7048 -4.9055 19 1 9.4287 5.8866 -5.6757 20 1 11.3771 4.6620 -4.9121 21 1 9.3586 3.4671 -5.5285 22 6 4.0611 2.5171 0.0010 23 6 3.4336 1.2849 0.0010 24 9 4.1694 0.1518 0.0014 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2127 2.3176 -0.0005 29 1 1.3278 4.5114 0.0000 30 1 2.9441 6.4634 1.0165 31 1 3.6838 6.9448 -0.5293 32 1 2.1921 5.9737 -0.5208 33 1 5.7173 5.9165 0.4938 34 1 5.8126 4.1391 0.4989 35 1 5.7877 6.3277 -3.1758 36 1 4.3391 6.3428 -2.1419 37 1 5.8194 7.1770 -1.6116 38 1 7.8260 5.8946 -1.0104 39 1 7.7754 4.1187 -0.9014 40 1 11.0937 4.8279 -2.3321 41 1 5.1396 2.5743 0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877181686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -58.055523 kcal Electronic energy + Delta-G solvation = -22077.279278 eV Core-core repulsion = 18679.060198 eV Total energy + Delta-G solvation = -3398.219080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.57024 -40.01445 -38.52463 -36.23259 -34.04920 -32.03676 -30.81225 -29.40363 -27.67499 -27.31150 -26.75770 -24.46594 -23.06996 -22.29103 -20.82114 -19.21035 -18.34920 -16.96742 -16.89262 -16.24461 -16.03256 -15.73240 -15.05501 -14.89346 -14.57915 -14.46649 -14.32773 -14.13768 -13.52730 -12.89477 -12.68648 -12.34276 -12.26325 -12.24053 -12.12874 -11.75523 -11.70282 -11.40927 -11.31266 -10.94388 -10.84509 -10.66843 -10.57966 -10.31651 -9.77253 -9.47582 -9.14124 -8.95821 -8.65125 -8.34482 -6.91485 -5.99138 -4.00782 1.24442 1.56878 3.18773 3.34062 3.34685 3.38657 3.41549 3.75180 4.39953 4.47249 4.71453 4.91612 5.02624 5.10041 5.15927 5.30967 5.35913 5.36471 5.44160 5.48521 5.60481 5.75229 5.79763 5.86778 5.96956 5.99748 6.13952 6.23403 6.28737 6.37711 6.46767 6.66021 6.89399 7.02483 7.08078 7.34312 7.47093 7.63698 7.64963 7.79164 7.99523 8.43245 9.04713 9.62978 11.12058 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.004120 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.702097 B = 6795.204249 C = 7654.402945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.022 3.978 4 C -0.131 4.131 5 C -0.180 4.180 6 C 0.224 3.776 7 N -0.621 5.621 8 C 0.089 3.911 9 C 0.122 3.878 10 C -0.104 4.104 11 H 0.060 0.940 12 C -0.132 4.132 13 C 0.029 3.971 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.196 4.196 23 C 0.123 3.877 24 F -0.133 7.133 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.261 0.739 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.888 -2.067 6.473 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.024 4.024 4 C -0.151 4.151 5 C -0.203 4.203 6 C 0.121 3.879 7 N -0.331 5.331 8 C -0.054 4.054 9 C 0.000 4.000 10 C -0.124 4.124 11 H 0.079 0.921 12 C -0.189 4.189 13 C -0.008 4.008 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.219 4.219 23 C 0.103 3.897 24 F -0.111 7.111 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.486 -2.099 6.521 20.655 hybrid contribution 0.371 -0.081 -1.036 1.104 sum -19.115 -2.180 5.485 20.005 Atomic orbital electron populations 1.22975 0.78951 1.03560 1.00975 1.86108 1.20790 1.26029 1.90156 1.18651 0.90544 0.85378 1.07877 1.20760 0.99450 0.91007 1.03834 1.20476 0.92450 0.97600 1.09759 1.17462 0.90994 0.85477 0.94007 1.46654 1.05780 1.01949 1.78669 1.21756 0.95958 0.86950 1.00701 1.21815 0.77294 1.02162 0.98711 1.21654 0.99704 0.97862 0.93142 0.92148 1.21777 0.98061 0.97320 1.01722 1.19087 0.87332 0.97142 0.97259 1.21162 0.91453 1.50102 0.92578 0.92712 1.25001 0.97086 0.95429 0.96869 1.69943 1.01943 1.50859 1.30819 0.86698 0.77592 0.78643 0.85319 1.20325 1.21321 1.20244 1.20603 1.01419 0.89161 1.10758 1.16643 0.85677 0.82387 1.05015 1.91492 1.76786 1.48899 1.93927 0.92991 0.92926 0.88571 0.85031 0.85333 0.93786 0.90574 0.91843 0.91016 0.90963 0.92116 0.94675 0.93858 0.96530 0.96625 0.92980 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.29 10.36 -19.94 -0.21 -4.49 16 3 C 0.02 0.32 6.69 -39.20 -0.26 0.05 16 4 C -0.13 -1.55 9.03 -39.47 -0.36 -1.90 16 5 C -0.18 -2.20 9.21 -39.38 -0.36 -2.56 16 6 C 0.22 3.24 6.55 -83.70 -0.55 2.69 16 7 N -0.62 -8.73 2.84 -179.57 -0.51 -9.24 16 8 C 0.09 0.98 9.26 59.84 0.55 1.53 16 9 C 0.12 1.98 4.66 -4.04 -0.02 1.96 16 10 C -0.10 -2.04 2.54 -90.62 -0.23 -2.27 16 11 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.13 -2.36 7.99 37.16 0.30 -2.07 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 15 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.20 -3.12 9.18 -39.34 -0.36 -3.48 16 23 C 0.12 1.99 7.31 -39.32 -0.29 1.70 16 24 F -0.13 -2.31 17.11 2.25 0.04 -2.27 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 29 H 0.13 1.27 6.14 -52.49 -0.32 0.95 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.84 5.98 -51.93 -0.31 0.53 16 32 H 0.06 0.60 6.20 -51.92 -0.32 0.28 16 33 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.07 1.19 6.19 -51.93 -0.32 0.87 16 35 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 36 H 0.03 0.54 5.89 -51.93 -0.31 0.23 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.15 2.46 6.13 -52.48 -0.32 2.14 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -31.18 332.38 -6.90 -38.08 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.85 Total: -2.30 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.10 Total: -15.49 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.23 Total: -35.22 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.21 Total: -4.49 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -6.90 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877181686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.980 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds