Wall clock time and date at job start Tue Mar 31 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47145 * 2 1 4 4 C 1.35896 * 116.99918 * 180.02562 * 3 2 1 5 5 C 1.38775 * 120.04303 * 0.02562 * 4 3 2 6 6 C 1.38135 * 119.99394 * 179.72873 * 5 4 3 7 7 C 1.38245 * 120.08012 * 359.97438 * 6 5 4 8 8 C 1.38472 * 120.08883 * 0.02773 * 7 6 5 9 9 F 1.35105 * 120.00188 * 179.97438 * 8 7 6 10 10 C 1.38392 * 120.00337 * 359.94936 * 8 7 6 11 11 C 1.50700 * 120.03725 * 180.02562 * 10 8 7 12 12 N 1.46891 * 109.47315 * 270.00163 * 11 10 8 13 13 C 1.46908 * 111.00260 * 176.36530 * 12 11 10 14 14 H 1.09007 * 109.46395 * 35.46635 * 13 12 11 15 15 C 1.50696 * 109.47317 * 155.46453 * 13 12 11 16 16 H 1.08004 * 120.00131 * 0.02562 * 15 13 12 17 17 C 1.37880 * 120.00209 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99338 * 359.97438 * 17 15 13 19 19 Si 1.86792 * 120.00136 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47007 * 90.00188 * 19 17 15 21 21 H 1.48501 * 109.47129 * 209.99752 * 19 17 15 22 22 H 1.48495 * 109.47309 * 330.00189 * 19 17 15 23 23 C 1.52997 * 109.47174 * 275.47122 * 13 12 11 24 24 C 1.53001 * 109.46975 * 294.07836 * 23 13 12 25 25 H 1.09000 * 109.46812 * 299.99884 * 1 2 3 26 26 H 1.08997 * 109.47097 * 59.99471 * 1 2 3 27 27 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46812 * 240.00116 * 2 1 3 29 29 H 1.08997 * 109.47097 * 120.00529 * 2 1 3 30 30 H 1.07995 * 120.00167 * 359.74676 * 5 4 3 31 31 H 1.07996 * 119.95612 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.95703 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47148 * 30.00759 * 11 10 8 34 34 H 1.09003 * 109.46516 * 150.00763 * 11 10 8 35 35 H 1.00904 * 111.00179 * 52.41954 * 12 11 10 36 36 H 0.97008 * 119.99451 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.47586 * 54.07787 * 23 13 12 38 38 H 1.09001 * 109.46737 * 174.08151 * 23 13 12 39 39 H 1.09007 * 109.47165 * 58.58653 * 24 23 13 40 40 H 1.08999 * 109.47587 * 178.58758 * 24 23 13 41 41 H 1.09002 * 109.46938 * 298.59135 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1998 0.4254 -0.0016 6 6 5.5691 0.6075 -0.0078 7 6 6.0982 1.8847 -0.0135 8 6 5.2570 2.9846 -0.0124 9 9 5.7760 4.2320 -0.0175 10 6 3.8846 2.8063 -0.0067 11 6 2.9684 4.0028 -0.0061 12 7 2.6761 4.3950 1.3790 13 6 1.8540 5.6119 1.4193 14 1 1.1552 5.6060 0.5827 15 6 1.0861 5.6567 2.7151 16 1 1.1978 4.8610 3.4368 17 6 0.2408 6.7134 2.9794 18 7 0.1052 7.6825 2.1008 19 14 -0.7116 6.7686 4.5854 20 1 0.0922 7.4773 5.6135 21 1 -1.9934 7.4886 4.3762 22 1 -0.9906 5.3838 5.0432 23 6 2.7585 6.8419 1.3195 24 6 3.6385 6.9304 2.5680 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7878 -0.5729 0.0021 31 1 6.2270 -0.2489 -0.0091 32 1 7.1690 2.0248 -0.0188 33 1 3.4521 4.8310 -0.5239 34 1 2.0389 3.7488 -0.5156 35 1 3.5269 4.5158 1.9078 36 1 -0.4892 8.4262 2.2869 37 1 3.3900 6.7578 0.4351 38 1 2.1443 7.7392 1.2436 39 1 4.2343 6.0220 2.6577 40 1 4.3005 7.7924 2.4857 41 1 3.0076 7.0396 3.4502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877363968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:32 Heat of formation + Delta-G solvation = -83.666819 kcal Electronic energy + Delta-G solvation = -22561.977757 eV Core-core repulsion = 19162.648088 eV Total energy + Delta-G solvation = -3399.329669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.95553 -41.17060 -38.61665 -38.03522 -34.92039 -33.29941 -32.46202 -31.09628 -30.41777 -28.37701 -26.03970 -25.09043 -24.82503 -22.91776 -22.18919 -21.21027 -19.42671 -18.23853 -17.88358 -17.16864 -17.01387 -16.94166 -16.63120 -16.48558 -16.02362 -15.42862 -15.30141 -14.76126 -14.43159 -14.20052 -14.06474 -13.88097 -13.70034 -13.38996 -13.31488 -13.02945 -12.79556 -12.71546 -12.57096 -12.47982 -12.36459 -11.99382 -11.79546 -11.60987 -11.57599 -11.43707 -10.99473 -10.44435 -9.76313 -9.21401 -8.94247 -8.05358 -6.14244 0.12881 0.34782 1.42667 1.43121 1.54184 2.21679 2.45175 2.60717 3.22866 3.40004 3.64885 3.78611 3.92471 4.04089 4.11181 4.15043 4.28926 4.36873 4.44624 4.50397 4.51400 4.60469 4.66415 4.76150 4.88840 4.97495 5.02119 5.07539 5.17806 5.23375 5.30342 5.34635 5.37430 5.39260 5.64002 5.70571 5.80779 5.81415 6.29011 6.49760 6.65257 6.77744 6.96345 7.52911 9.00556 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.005561 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.038416 B = 5034.279918 C = 6356.709304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.328 6.328 4 C 0.163 3.837 5 C -0.216 4.216 6 C -0.042 4.042 7 C -0.192 4.192 8 C 0.117 3.883 9 F -0.147 7.147 10 C -0.174 4.174 11 C 0.117 3.883 12 N -0.672 5.672 13 C 0.223 3.777 14 H -0.006 1.006 15 C -0.498 4.498 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.137 4.137 24 C -0.116 4.116 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.178 0.822 32 H 0.158 0.842 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.326 0.674 36 H 0.259 0.741 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.559 -17.931 -5.338 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.241 6.241 4 C 0.116 3.884 5 C -0.235 4.235 6 C -0.059 4.059 7 C -0.210 4.210 8 C 0.097 3.903 9 F -0.126 7.126 10 C -0.176 4.176 11 C -0.012 4.012 12 N -0.303 5.303 13 C 0.114 3.886 14 H 0.012 0.988 15 C -0.537 4.537 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.562 5.562 19 Si 0.781 3.219 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.177 4.177 24 C -0.173 4.173 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.176 0.824 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.145 0.855 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.743 -18.007 -5.310 20.710 hybrid contribution -0.097 1.537 0.340 1.577 sum 8.646 -16.470 -4.970 19.254 Atomic orbital electron populations 1.21812 0.92531 1.04052 1.02517 1.23119 0.96371 0.80519 1.02791 1.86212 1.18678 1.31610 1.87628 1.18624 0.83382 0.92652 0.93706 1.21637 0.94484 0.98406 1.08974 1.21214 0.94392 0.96952 0.93384 1.21307 1.00949 0.91247 1.07542 1.17597 0.90617 0.80081 1.01993 1.91467 1.86909 1.40354 1.93869 1.19218 0.92649 0.94472 1.11269 1.20386 0.96641 0.92579 0.91638 1.60847 1.21873 1.37384 1.10194 1.18963 0.90125 0.84005 0.95500 0.98796 1.21207 1.23985 1.05628 1.02865 0.93135 1.25624 0.97725 0.95284 0.99860 1.70029 1.38763 1.11048 1.36358 0.85599 0.78054 0.78007 0.80224 1.20022 1.21036 1.19690 1.21940 0.97450 1.02900 0.95387 1.21421 0.97955 0.99270 0.98650 0.93306 0.92452 0.87350 0.89753 0.90631 0.81886 0.80505 0.82396 0.96521 0.92051 0.85529 0.93148 0.96304 0.91712 0.93921 0.93708 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 10.28 71.98 0.74 -2.27 16 2 C 0.05 0.95 5.46 71.98 0.39 1.34 16 3 O -0.33 -10.42 9.18 -92.38 -0.85 -11.26 16 4 C 0.16 4.92 6.66 22.50 0.15 5.07 16 5 C -0.22 -4.47 9.04 22.37 0.20 -4.27 16 6 C -0.04 -0.72 10.04 22.25 0.22 -0.50 16 7 C -0.19 -4.24 10.02 22.33 0.22 -4.02 16 8 C 0.12 3.63 7.24 22.36 0.16 3.80 16 9 F -0.15 -5.07 16.48 44.97 0.74 -4.33 16 10 C -0.17 -6.09 5.37 -19.73 -0.11 -6.20 16 11 C 0.12 4.96 5.21 85.56 0.45 5.40 16 12 N -0.67 -31.87 6.24 -499.47 -3.12 -34.99 16 13 C 0.22 12.03 2.33 44.17 0.10 12.13 16 14 H -0.01 -0.36 7.85 -2.38 -0.02 -0.38 16 15 C -0.50 -28.59 7.35 25.60 0.19 -28.40 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.74 5.23 84.66 0.44 1.19 16 18 N -0.92 -54.50 11.39 21.45 0.24 -54.25 16 19 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 23 C -0.14 -6.98 5.50 30.59 0.17 -6.81 16 24 C -0.12 -5.26 9.39 71.98 0.68 -4.58 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 29 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 30 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.02 0.73 6.75 -2.39 -0.02 0.72 16 34 H 0.06 2.76 7.51 -2.39 -0.02 2.75 16 35 H 0.33 15.02 6.55 -89.69 -0.59 14.43 16 36 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 37 H 0.02 0.89 7.26 -2.39 -0.02 0.88 16 38 H 0.06 3.66 6.25 -2.39 -0.01 3.64 16 39 H 0.04 1.80 6.42 -2.38 -0.02 1.78 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 2.26 7.05 -2.39 -0.02 2.24 16 Total: -1.00 -68.45 335.33 3.50 -64.95 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.44 Total: 20.84 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 4.01 Total: -28.13 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.87 Total: -89.24 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.85 Total: -11.26 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.74 Total: -4.33 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.45 3.50 -64.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877363968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.719 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds