Wall clock time and date at job start Tue Mar 31 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47055 * 2 1 4 4 C 1.35897 * 116.99360 * 180.02562 * 3 2 1 5 5 C 1.38764 * 120.04796 * 359.97438 * 4 3 2 6 6 C 1.38133 * 119.99621 * 179.97438 * 5 4 3 7 7 C 1.38253 * 120.07984 * 0.02562 * 6 5 4 8 8 C 1.38475 * 120.08430 * 0.02562 * 7 6 5 9 9 F 1.35105 * 119.99820 * 180.02562 * 8 7 6 10 10 C 1.38380 * 120.00530 * 359.69940 * 8 7 6 11 11 C 1.50707 * 120.04427 * 180.29715 * 10 8 7 12 12 N 1.46899 * 109.46858 * 270.26038 * 11 10 8 13 13 C 1.46900 * 110.99497 * 185.22094 * 12 11 10 14 14 H 1.09005 * 109.47166 * 34.23234 * 13 12 11 15 15 C 1.50698 * 109.47569 * 274.22641 * 13 12 11 16 16 H 1.07997 * 120.00067 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99959 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99898 * 180.02562 * 17 15 13 19 19 Si 1.86801 * 120.00129 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.47049 * 89.99508 * 19 17 15 21 21 H 1.48498 * 109.46730 * 209.99690 * 19 17 15 22 22 H 1.48500 * 109.46864 * 329.99248 * 19 17 15 23 23 C 1.53003 * 109.47087 * 154.22720 * 13 12 11 24 24 C 1.53003 * 109.47296 * 294.91281 * 23 13 12 25 25 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46909 * 299.99862 * 1 2 3 27 27 H 1.08999 * 109.46905 * 59.99510 * 1 2 3 28 28 H 1.08999 * 109.47318 * 120.00145 * 2 1 3 29 29 H 1.09003 * 109.46909 * 240.00138 * 2 1 3 30 30 H 1.07997 * 120.00265 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.95994 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.95935 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46442 * 30.25964 * 11 10 8 34 34 H 1.09000 * 109.47453 * 150.25666 * 11 10 8 35 35 H 1.00897 * 111.00381 * 61.27193 * 12 11 10 36 36 H 0.96998 * 120.00353 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.46629 * 54.90668 * 23 13 12 38 38 H 1.08998 * 109.47380 * 174.90844 * 23 13 12 39 39 H 1.08993 * 109.47264 * 180.02562 * 24 23 13 40 40 H 1.09000 * 109.46706 * 300.01573 * 24 23 13 41 41 H 1.09003 * 109.47006 * 60.01301 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1997 0.4254 -0.0005 6 6 5.5690 0.6075 -0.0016 7 6 6.0982 1.8847 -0.0022 8 6 5.2569 2.9846 -0.0011 9 9 5.7759 4.2320 -0.0022 10 6 3.8847 2.8063 -0.0058 11 6 2.9683 4.0027 -0.0114 12 7 2.6706 4.3979 1.3717 13 6 1.6818 5.4838 1.4077 14 1 0.9754 5.3592 0.5869 15 6 2.3856 6.8090 1.2679 16 1 3.4600 6.8413 1.1625 17 6 1.6579 7.9800 1.2736 18 7 2.2721 9.1365 1.1512 19 14 -0.2004 7.9240 1.4552 20 1 -0.5591 7.9854 2.8949 21 1 -0.8022 9.0812 0.7453 22 1 -0.7171 6.6609 0.8697 23 6 0.9289 5.4441 2.7390 24 6 0.1126 4.1529 2.8251 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.7877 -0.5729 0.0003 31 1 6.2270 -0.2489 -0.0020 32 1 7.1691 2.0249 -0.0026 33 1 3.4541 4.8299 -0.5291 34 1 2.0409 3.7477 -0.5241 35 1 3.5126 4.6593 1.8624 36 1 1.7602 9.9604 1.1555 37 1 1.6434 5.4777 3.5616 38 1 0.2597 6.3021 2.8037 39 1 -0.4241 4.1249 3.7733 40 1 -0.6016 4.1192 2.0023 41 1 0.7818 3.2950 2.7607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877363970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:34 Heat of formation + Delta-G solvation = -62.517540 kcal Electronic energy + Delta-G solvation = -22653.733876 eV Core-core repulsion = 19255.321308 eV Total energy + Delta-G solvation = -3398.412568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.63857 -40.12186 -37.36502 -36.34725 -33.20177 -31.94795 -31.63596 -30.04961 -29.40793 -26.96345 -24.54976 -23.95137 -22.36106 -21.82702 -20.91563 -19.79046 -18.35858 -17.03033 -16.59844 -16.17695 -15.88328 -15.69363 -15.34310 -15.02323 -14.32712 -14.14163 -13.81167 -13.30001 -13.11329 -12.86420 -12.80378 -12.56744 -12.45252 -12.28052 -11.87435 -11.77846 -11.63441 -11.52418 -11.27228 -10.98406 -10.75113 -10.68430 -10.47751 -10.18644 -9.71424 -9.41931 -9.14983 -8.61174 -8.50946 -8.15669 -7.27184 -6.06894 -4.07445 1.22153 1.38572 3.13650 3.29918 3.39995 3.43155 3.65116 4.42055 4.48697 4.70867 4.82152 4.90976 4.97690 5.01118 5.12387 5.22155 5.28068 5.36724 5.57074 5.62026 5.70726 5.92429 5.95204 6.03793 6.11093 6.13162 6.22259 6.32875 6.34492 6.45802 6.56926 6.76141 6.81404 6.86820 7.05746 7.16200 7.33528 7.44778 7.62212 8.08949 8.43877 8.55267 8.96951 9.56566 11.06136 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.005968 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.592796 B = 4690.512820 C = 6038.557736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.295 6.295 4 C 0.176 3.824 5 C -0.227 4.227 6 C -0.060 4.060 7 C -0.197 4.197 8 C 0.142 3.858 9 F -0.128 7.128 10 C -0.137 4.137 11 C 0.111 3.889 12 N -0.670 5.670 13 C 0.185 3.815 14 H 0.032 0.968 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.299 1.299 22 H -0.264 1.264 23 C -0.114 4.114 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.333 0.667 36 H 0.263 0.737 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -20.622 -2.650 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.208 6.208 4 C 0.129 3.871 5 C -0.246 4.246 6 C -0.078 4.078 7 C -0.216 4.216 8 C 0.122 3.878 9 F -0.106 7.106 10 C -0.139 4.139 11 C -0.018 4.018 12 N -0.299 5.299 13 C 0.076 3.924 14 H 0.050 0.950 15 C -0.584 4.584 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.205 1.205 21 H -0.227 1.227 22 H -0.189 1.189 23 C -0.152 4.152 24 C -0.199 4.199 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.653 -20.725 -2.576 20.895 hybrid contribution -0.166 0.951 -0.127 0.974 sum 0.487 -19.774 -2.703 19.964 Atomic orbital electron populations 1.21762 0.92733 1.02462 1.03983 1.22781 0.96042 0.82240 1.01007 1.86210 1.18299 1.28569 1.87676 1.18391 0.82733 0.92393 0.93616 1.21211 0.94278 0.98014 1.11137 1.20637 0.94304 0.96276 0.96604 1.20971 1.00083 0.91712 1.08829 1.17298 0.90685 0.79793 0.99995 1.91554 1.86767 1.38889 1.93377 1.19382 0.92487 0.94721 1.07312 1.20489 0.96891 0.91662 0.92790 1.60797 1.15457 1.41901 1.11715 1.19567 0.91124 0.88531 0.93182 0.94992 1.21782 0.95678 0.89948 1.50957 0.90864 1.25007 0.98433 0.95388 0.94184 1.69926 1.35968 0.97609 1.50129 0.86817 0.86177 0.77181 0.77834 1.20505 1.22684 1.18912 1.21798 0.97937 0.95221 1.00256 1.21713 0.99448 0.99858 0.98835 0.90680 0.91140 0.91503 0.92100 0.92341 0.85307 0.85241 0.84977 0.93725 0.90380 0.85077 0.92715 0.92500 0.93807 0.95067 0.94287 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.29 -4.29 9.18 -19.42 -0.18 -4.47 16 4 C 0.18 2.59 6.66 -39.22 -0.26 2.33 16 5 C -0.23 -2.66 9.04 -39.43 -0.36 -3.02 16 6 C -0.06 -0.65 10.04 -39.61 -0.40 -1.05 16 7 C -0.20 -2.52 10.02 -39.49 -0.40 -2.92 16 8 C 0.14 2.30 7.24 -39.44 -0.29 2.01 16 9 F -0.13 -2.32 16.48 2.25 0.04 -2.28 16 10 C -0.14 -2.32 5.46 -104.40 -0.57 -2.89 16 11 C 0.11 2.20 5.23 -4.97 -0.03 2.18 16 12 N -0.67 -14.28 5.66 -109.21 -0.62 -14.90 16 13 C 0.19 4.46 1.57 -68.86 -0.11 4.36 16 14 H 0.03 0.81 6.76 -51.93 -0.35 0.46 16 15 C -0.54 -15.46 9.05 -34.44 -0.31 -15.77 16 16 H 0.07 2.27 7.97 -52.49 -0.42 1.85 16 17 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 18 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 19 Si 0.89 22.47 24.41 -169.99 -4.15 18.32 16 20 H -0.28 -6.86 6.83 56.52 0.39 -6.47 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 23 C -0.11 -2.57 5.11 -26.73 -0.14 -2.71 16 24 C -0.14 -2.70 9.80 37.16 0.36 -2.33 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.04 0.97 7.62 -51.93 -0.40 0.58 16 34 H 0.08 1.56 7.31 -51.93 -0.38 1.18 16 35 H 0.33 7.33 8.45 -39.29 -0.33 7.00 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.04 1.05 3.22 -51.93 -0.17 0.88 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.19 7.76 -51.93 -0.40 0.79 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -31.43 334.54 -7.23 -38.66 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.14 Total: 4.79 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.00 Total: -18.03 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.15 Total: -42.03 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.18 Total: -4.47 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.15 Total: 18.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.43 -7.23 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877363970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.862 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds