Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36052 * 117.00367 * 2 1 4 4 C 1.38636 * 119.98667 * 0.02562 * 3 2 1 5 5 C 1.38144 * 120.04234 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99079 * 179.97438 * 5 4 3 7 7 C 1.38869 * 120.02035 * 0.02562 * 5 4 3 8 8 N 1.39928 * 120.01056 * 179.97438 * 7 5 4 9 9 C 1.46499 * 119.99605 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46906 * 179.97438 * 9 8 7 11 11 H 1.09011 * 109.47251 * 54.99468 * 10 9 8 12 12 C 1.52998 * 109.47403 * 294.99811 * 10 9 8 13 13 C 1.52999 * 109.47441 * 174.99397 * 10 9 8 14 14 C 1.50694 * 109.47552 * 184.99953 * 13 10 9 15 15 H 1.07999 * 119.99808 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00239 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46777 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47100 * 119.99914 * 18 16 14 21 21 H 1.48497 * 109.47239 * 240.00452 * 18 16 14 22 22 C 1.38843 * 119.97326 * 359.97438 * 7 5 4 23 23 C 1.38288 * 119.95934 * 359.74517 * 22 7 5 24 24 F 1.35107 * 120.01054 * 180.25572 * 23 22 7 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99587 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99708 * 1 2 3 28 28 H 1.07994 * 119.97714 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47057 * 90.00421 * 6 5 4 30 30 H 1.09003 * 109.47037 * 210.00687 * 6 5 4 31 31 H 1.09007 * 109.46821 * 330.00271 * 6 5 4 32 32 H 0.97000 * 120.00053 * 359.97438 * 8 7 5 33 33 H 1.09002 * 109.46880 * 299.99230 * 9 8 7 34 34 H 1.08992 * 109.47884 * 59.99555 * 9 8 7 35 35 H 1.08998 * 109.47081 * 59.99396 * 12 10 9 36 36 H 1.08999 * 109.47336 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.46764 * 300.00279 * 12 10 9 38 38 H 1.08997 * 109.47133 * 305.00011 * 13 10 9 39 39 H 1.09004 * 109.46900 * 64.99630 * 13 10 9 40 40 H 0.96992 * 119.99715 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.01539 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2915 2.3748 0.0005 5 6 1.9176 3.6062 0.0000 6 6 1.0954 4.8692 0.0000 7 6 3.3043 3.6806 -0.0016 8 7 3.9382 4.9281 -0.0027 9 6 5.4011 5.0062 -0.0050 10 6 5.8333 6.4739 -0.0064 11 1 5.3717 6.9895 0.8359 12 6 5.3907 7.1347 -1.3134 13 6 7.3561 6.5573 0.1171 14 6 7.7719 8.0005 0.2392 15 1 7.0249 8.7804 0.2301 16 6 9.1062 8.3255 0.3626 17 7 10.0160 7.3758 0.3732 18 14 9.6218 10.1146 0.5132 19 1 8.4169 10.9819 0.4743 20 1 10.3357 10.3174 1.7994 21 1 10.5223 10.4668 -0.6138 22 6 4.0614 2.5168 -0.0021 23 6 3.4337 1.2846 0.0043 24 9 4.1694 0.1515 0.0090 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8901 28 1 0.2131 2.3176 0.0005 29 1 0.8977 5.1740 1.0277 30 1 1.6429 5.6591 -0.5143 31 1 0.1511 4.6880 -0.5134 32 1 3.4090 5.7410 -0.0027 33 1 5.7926 4.5127 0.8846 34 1 5.7900 4.5124 -0.8954 35 1 4.3059 7.0753 -1.4014 36 1 5.6991 8.1802 -1.3146 37 1 5.8522 6.6191 -2.1556 38 1 7.6793 6.0099 1.0025 39 1 7.8169 6.1200 -0.7687 40 1 10.9546 7.6045 0.4596 41 1 5.1399 2.5739 -0.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877409164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = -77.229716 kcal Electronic energy + Delta-G solvation = -21569.293138 eV Core-core repulsion = 18170.242602 eV Total energy + Delta-G solvation = -3399.050536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.67593 -40.14481 -38.40479 -36.32440 -33.69112 -32.50218 -31.95846 -28.97748 -27.94991 -27.02775 -26.39396 -25.36777 -23.17681 -21.79239 -21.30987 -19.39548 -18.07166 -17.33701 -17.05689 -16.33992 -16.12967 -15.20084 -15.04254 -14.81063 -14.58844 -14.49924 -14.44625 -14.19705 -13.75753 -13.18181 -12.87438 -12.66594 -12.24986 -12.22402 -12.17769 -11.99240 -11.69607 -11.60484 -11.20880 -11.13941 -10.95330 -10.82890 -10.43043 -10.38879 -9.93783 -9.39947 -9.32420 -9.07490 -8.71001 -8.40324 -7.05138 -6.04541 -4.06614 1.12473 1.50296 3.16651 3.27791 3.35766 3.38569 3.58777 3.63223 4.33126 4.42443 4.61311 4.82825 4.92095 4.96881 5.02682 5.26788 5.31405 5.36706 5.45861 5.51158 5.56951 5.61572 5.65299 5.84357 5.86368 6.00827 6.09767 6.15945 6.27706 6.31221 6.37891 6.59947 6.78962 6.95225 6.99470 7.25902 7.46454 7.59001 7.71984 7.87539 7.93954 8.35970 8.99316 9.57433 11.06879 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.003111 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.228195 B = 8997.183567 C = 9703.212979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.026 3.974 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.104 4.104 7 C 0.224 3.776 8 N -0.735 5.735 9 C 0.122 3.878 10 C -0.095 4.095 11 H 0.062 0.938 12 C -0.132 4.132 13 C 0.029 3.971 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.199 4.199 23 C 0.117 3.883 24 F -0.134 7.134 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.050 -9.878 -1.271 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.161 4.161 7 C 0.118 3.882 8 N -0.365 5.365 9 C -0.001 4.001 10 C -0.114 4.114 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.008 4.008 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.223 4.223 23 C 0.097 3.903 24 F -0.113 7.113 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.519 -10.123 -1.262 22.025 hybrid contribution 0.190 1.154 0.095 1.174 sum -19.330 -8.969 -1.167 21.341 Atomic orbital electron populations 1.22985 0.78867 1.03601 1.01036 1.86104 1.20860 1.25968 1.90144 1.18598 0.90493 0.85327 1.07658 1.20659 0.99437 0.90460 1.04443 1.19175 0.91719 0.95236 1.08750 1.20595 0.98964 0.94394 1.02171 1.17320 0.90408 0.86194 0.94273 1.45090 1.06810 1.04035 1.80515 1.21702 0.78226 0.99418 1.00797 1.21437 1.00931 0.91435 0.97618 0.91933 1.21727 0.97782 1.02052 0.97391 1.19088 0.86944 0.97363 0.97414 1.21212 0.91956 0.92368 1.49904 0.92508 1.25019 0.96867 0.97179 0.95416 1.69968 1.00934 1.31912 1.50537 0.86562 0.78614 0.85320 0.77657 1.19787 1.21037 1.21036 1.20437 1.00980 0.89157 1.11676 1.16618 0.85700 0.82302 1.05720 1.91481 1.76797 1.48988 1.94030 0.88521 0.92928 0.92915 0.84929 0.91318 0.91751 0.91560 0.76301 0.92317 0.92417 0.95183 0.91700 0.93402 0.96396 0.96257 0.93011 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.99 10.36 -19.91 -0.21 -4.20 16 3 C 0.03 0.35 6.69 -39.20 -0.26 0.08 16 4 C -0.13 -1.46 8.68 -39.47 -0.34 -1.81 16 5 C -0.14 -1.69 5.90 -104.42 -0.62 -2.30 16 6 C -0.10 -0.94 9.57 36.01 0.34 -0.60 16 7 C 0.22 3.06 6.63 -83.70 -0.56 2.50 16 8 N -0.73 -10.11 5.37 -58.60 -0.31 -10.42 16 9 C 0.12 1.96 4.30 -4.04 -0.02 1.95 16 10 C -0.10 -1.78 2.37 -90.62 -0.22 -2.00 16 11 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 12 C -0.13 -2.29 8.88 37.16 0.33 -1.96 16 13 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 14 C -0.52 -13.89 8.41 -34.44 -0.29 -14.17 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.20 -2.88 9.29 -39.34 -0.37 -3.24 16 23 C 0.12 1.73 7.30 -39.33 -0.29 1.45 16 24 F -0.13 -2.12 17.11 2.25 0.04 -2.08 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.40 4.98 5.64 -40.82 -0.23 4.75 16 33 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 34 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.03 0.43 7.18 -51.93 -0.37 0.05 16 36 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.14 2.06 6.73 -52.48 -0.35 1.71 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -30.17 337.58 -7.25 -37.43 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.07 Total: 0.41 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.51 Total: -16.81 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.42 Total: -36.00 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.21 Total: -4.20 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.17 -7.25 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877409164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.801 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds