Wall clock time and date at job start Tue Mar 31 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36052 * 117.00367 * 2 1 4 4 C 1.38636 * 119.98667 * 0.02562 * 3 2 1 5 5 C 1.38144 * 120.04234 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99079 * 179.97438 * 5 4 3 7 7 C 1.38869 * 120.02035 * 0.02562 * 5 4 3 8 8 N 1.39928 * 120.01056 * 179.97438 * 7 5 4 9 9 C 1.46499 * 119.99605 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46906 * 179.97438 * 9 8 7 11 11 H 1.09011 * 109.47251 * 54.99468 * 10 9 8 12 12 C 1.52998 * 109.47403 * 294.99811 * 10 9 8 13 13 C 1.52999 * 109.47441 * 174.99397 * 10 9 8 14 14 C 1.50694 * 109.47552 * 184.99953 * 13 10 9 15 15 H 1.07999 * 119.99808 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00239 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46777 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47100 * 119.99914 * 18 16 14 21 21 H 1.48497 * 109.47239 * 240.00452 * 18 16 14 22 22 C 1.38843 * 119.97326 * 359.97438 * 7 5 4 23 23 C 1.38288 * 119.95934 * 359.74517 * 22 7 5 24 24 F 1.35107 * 120.01054 * 180.25572 * 23 22 7 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99587 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99708 * 1 2 3 28 28 H 1.07994 * 119.97714 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47057 * 90.00421 * 6 5 4 30 30 H 1.09003 * 109.47037 * 210.00687 * 6 5 4 31 31 H 1.09007 * 109.46821 * 330.00271 * 6 5 4 32 32 H 0.97000 * 120.00053 * 359.97438 * 8 7 5 33 33 H 1.09002 * 109.46880 * 299.99230 * 9 8 7 34 34 H 1.08992 * 109.47884 * 59.99555 * 9 8 7 35 35 H 1.08998 * 109.47081 * 59.99396 * 12 10 9 36 36 H 1.08999 * 109.47336 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.46764 * 300.00279 * 12 10 9 38 38 H 1.08997 * 109.47133 * 305.00011 * 13 10 9 39 39 H 1.09004 * 109.46900 * 64.99630 * 13 10 9 40 40 H 0.96992 * 119.99715 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.01539 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2915 2.3748 0.0005 5 6 1.9176 3.6062 0.0000 6 6 1.0954 4.8692 0.0000 7 6 3.3043 3.6806 -0.0016 8 7 3.9382 4.9281 -0.0027 9 6 5.4011 5.0062 -0.0050 10 6 5.8333 6.4739 -0.0064 11 1 5.3717 6.9895 0.8359 12 6 5.3907 7.1347 -1.3134 13 6 7.3561 6.5573 0.1171 14 6 7.7719 8.0005 0.2392 15 1 7.0249 8.7804 0.2301 16 6 9.1062 8.3255 0.3626 17 7 10.0160 7.3758 0.3732 18 14 9.6218 10.1146 0.5132 19 1 8.4169 10.9819 0.4743 20 1 10.3357 10.3174 1.7994 21 1 10.5223 10.4668 -0.6138 22 6 4.0614 2.5168 -0.0021 23 6 3.4337 1.2846 0.0043 24 9 4.1694 0.1515 0.0090 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8901 28 1 0.2131 2.3176 0.0005 29 1 0.8977 5.1740 1.0277 30 1 1.6429 5.6591 -0.5143 31 1 0.1511 4.6880 -0.5134 32 1 3.4090 5.7410 -0.0027 33 1 5.7926 4.5127 0.8846 34 1 5.7900 4.5124 -0.8954 35 1 4.3059 7.0753 -1.4014 36 1 5.6991 8.1802 -1.3146 37 1 5.8522 6.6191 -2.1556 38 1 7.6793 6.0099 1.0025 39 1 7.8169 6.1200 -0.7687 40 1 10.9546 7.6045 0.4596 41 1 5.1399 2.5739 -0.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877409164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:57 Heat of formation + Delta-G solvation = -94.372590 kcal Electronic energy + Delta-G solvation = -21570.036508 eV Core-core repulsion = 18170.242602 eV Total energy + Delta-G solvation = -3399.793906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.81866 -41.10589 -39.41424 -37.70300 -35.26674 -33.78867 -33.33575 -30.11947 -28.81145 -28.61285 -27.53507 -26.51333 -24.86838 -22.94235 -22.32697 -20.90102 -19.10440 -18.64381 -18.28806 -17.88897 -17.08376 -16.61369 -16.19734 -16.09272 -15.96665 -15.80797 -15.46962 -15.10213 -14.76459 -14.42469 -14.36902 -13.89809 -13.81195 -13.35099 -13.20823 -12.96954 -12.88570 -12.78635 -12.68508 -12.48720 -12.25960 -12.16649 -12.02138 -11.92021 -11.56969 -11.16553 -11.01942 -10.54627 -10.40668 -9.72574 -8.17835 -8.09517 -6.26919 0.12379 0.49104 1.40569 1.41499 1.53601 2.32105 2.41003 2.51773 2.62952 3.16542 3.32333 3.72897 3.95151 4.03325 4.09782 4.17774 4.37778 4.40867 4.46531 4.52071 4.58524 4.75857 4.76928 4.79607 4.86719 4.87056 4.92394 4.95913 5.02403 5.21444 5.28821 5.31554 5.39461 5.46933 5.52479 5.62730 5.77295 5.86797 6.19055 6.29894 6.47457 6.85397 6.90124 7.41746 8.94486 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.003111 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.228195 B = 8997.183567 C = 9703.212979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.028 3.972 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.106 4.106 7 C 0.208 3.792 8 N -0.729 5.729 9 C 0.138 3.862 10 C -0.083 4.083 11 H 0.066 0.934 12 C -0.125 4.125 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.960 3.040 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.212 4.212 23 C 0.083 3.917 24 F -0.149 7.149 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.169 0.831 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.409 0.591 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.040 0.960 38 H -0.011 1.011 39 H -0.007 1.007 40 H 0.261 0.739 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.339 -8.592 -1.411 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C -0.019 4.019 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.162 4.162 7 C 0.103 3.897 8 N -0.361 5.361 9 C 0.013 3.987 10 C -0.102 4.102 11 H 0.085 0.915 12 C -0.183 4.183 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.236 4.236 23 C 0.063 3.937 24 F -0.128 7.128 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.186 0.814 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.248 0.752 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.855 -8.841 -1.403 24.545 hybrid contribution 1.104 0.649 0.145 1.289 sum -21.751 -8.191 -1.259 23.276 Atomic orbital electron populations 1.23350 0.76212 1.05490 1.02475 1.86085 1.23667 1.25848 1.89955 1.18773 0.90054 0.86502 1.06597 1.21025 1.01037 0.89271 1.02986 1.19566 0.90966 0.96843 1.06217 1.20709 0.99476 0.92736 1.03301 1.17444 0.91392 0.85467 0.95403 1.44767 1.05401 1.04632 1.81342 1.21293 0.80058 0.97299 1.00057 1.21190 0.96834 0.93400 0.98794 0.91536 1.21644 1.00087 1.00571 0.95950 1.18977 0.90982 0.95788 0.94795 1.21647 0.92295 0.93628 1.48871 0.91676 1.25951 0.97127 1.01732 0.95245 1.70109 1.01286 1.34301 1.51957 0.85462 0.78510 0.79956 0.77513 1.18301 1.20792 1.20752 1.20428 1.00662 0.89890 1.12586 1.16910 0.86784 0.81964 1.08089 1.91427 1.77318 1.49675 1.94408 0.86683 0.91355 0.91399 0.81368 0.90151 0.91522 0.89170 0.75222 0.93496 0.93095 0.91474 0.93188 0.94129 0.99219 0.98892 0.92983 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.12 10.36 -94.14 -0.98 -9.10 16 3 C 0.03 0.71 6.69 22.52 0.15 0.86 16 4 C -0.12 -2.41 8.68 22.34 0.19 -2.21 16 5 C -0.13 -2.70 5.90 -19.74 -0.12 -2.82 16 6 C -0.11 -1.45 9.57 71.24 0.68 -0.77 16 7 C 0.21 5.45 6.63 38.14 0.25 5.71 16 8 N -0.73 -19.18 5.37 -339.30 -1.82 -21.00 16 9 C 0.14 4.49 4.30 86.38 0.37 4.87 16 10 C -0.08 -3.12 2.37 -10.79 -0.03 -3.14 16 11 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 12 C -0.13 -4.19 8.88 71.98 0.64 -3.55 16 13 C 0.03 1.62 4.45 29.85 0.13 1.75 16 14 C -0.53 -28.65 8.41 25.60 0.22 -28.43 16 15 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 17 N -0.94 -56.58 13.29 21.45 0.28 -56.29 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 C -0.21 -6.31 9.29 22.43 0.21 -6.10 16 23 C 0.08 2.51 7.30 22.44 0.16 2.67 16 24 F -0.15 -4.98 17.11 44.97 0.77 -4.21 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.07 0.63 7.66 -2.38 -0.02 0.62 16 28 H 0.17 2.00 6.29 -2.91 -0.02 1.98 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.92 6.54 -2.39 -0.02 0.90 16 31 H 0.09 0.85 8.09 -2.38 -0.02 0.84 16 32 H 0.41 9.15 5.64 -92.71 -0.52 8.63 16 33 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 34 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 35 H 0.07 1.74 7.18 -2.39 -0.02 1.72 16 36 H 0.05 1.81 6.95 -2.39 -0.02 1.80 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 39 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.13 4.07 6.73 -2.91 -0.02 4.05 16 Total: -1.00 -67.30 337.58 5.24 -62.06 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.51 Total: 12.48 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.44 Total: -29.55 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.54 Total: -77.30 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.98 Total: -9.10 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.77 Total: -4.21 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -67.30 5.24 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877409164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.311 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds