Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38139 * 119.97609 * 264.72262 * 5 2 1 7 7 C 1.38857 * 119.94798 * 179.79153 * 6 5 2 8 8 N 1.39827 * 120.05007 * 180.24180 * 7 6 5 9 9 C 1.46502 * 120.00148 * 180.27646 * 8 7 6 10 10 C 1.52993 * 109.47040 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47194 * 54.99605 * 10 9 8 12 12 C 1.53000 * 109.47418 * 294.99798 * 10 9 8 13 13 C 1.53001 * 109.47077 * 174.99632 * 10 9 8 14 14 C 1.50701 * 109.47262 * 185.00126 * 13 10 9 15 15 H 1.07996 * 119.99988 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00235 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99460 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00177 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47074 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47032 * 119.99781 * 18 16 14 21 21 H 1.48496 * 109.47308 * 240.00072 * 18 16 14 22 22 C 1.38897 * 119.90293 * 0.50830 * 7 6 5 23 23 C 1.38099 * 119.95044 * 359.73171 * 22 7 6 24 24 C 1.38448 * 119.97350 * 85.00644 * 5 2 1 25 25 F 1.35094 * 119.95030 * 359.97147 * 24 5 2 26 26 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 27 27 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 28 28 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 29 29 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 30 30 H 1.08001 * 120.02952 * 0.02723 * 6 5 2 31 31 H 0.96999 * 119.99808 * 0.26151 * 8 7 6 32 32 H 1.08997 * 109.46549 * 299.99569 * 9 8 7 33 33 H 1.09005 * 109.47210 * 59.99155 * 9 8 7 34 34 H 1.08996 * 109.47323 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46781 * 300.00060 * 12 10 9 36 36 H 1.08997 * 109.46827 * 59.99628 * 12 10 9 37 37 H 1.09002 * 109.47143 * 304.99750 * 13 10 9 38 38 H 1.09001 * 109.47018 * 64.99953 * 13 10 9 39 39 H 0.97008 * 120.00143 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.02718 * 179.74507 * 22 7 6 41 41 H 1.07993 * 119.97582 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3662 -2.0494 -1.1663 7 6 2.8249 -2.7045 -2.3014 8 7 3.1586 -4.0610 -2.2401 9 6 3.6483 -4.7497 -3.4369 10 6 3.9385 -6.2136 -3.1000 11 1 3.0477 -6.6708 -2.6692 12 6 5.0874 -6.2870 -2.0923 13 6 4.3301 -6.9625 -4.3754 14 6 4.4965 -8.4281 -4.0665 15 1 4.3390 -8.7892 -3.0609 16 6 4.8506 -9.3078 -5.0674 17 7 5.0428 -8.8679 -6.2917 18 14 5.0575 -11.1243 -4.6842 19 1 4.7860 -11.3603 -3.2435 20 1 4.1037 -11.9146 -5.5032 21 1 6.4467 -11.5420 -5.0015 22 6 2.9571 -2.0091 -3.4964 23 6 2.6268 -0.6695 -3.5547 24 6 2.1645 -0.0193 -2.4227 25 9 1.8424 1.2913 -2.4818 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7209 -1.5952 1.2330 30 1 2.2669 -2.5872 -0.2350 31 1 3.0662 -4.5460 -1.4052 32 1 2.8916 -4.6998 -4.2198 33 1 4.5628 -4.2689 -3.7843 34 1 5.2939 -7.3299 -1.8520 35 1 5.9783 -5.8298 -2.5231 36 1 4.8084 -5.7535 -1.1837 37 1 3.5494 -6.8357 -5.1255 38 1 5.2695 -6.5628 -4.7575 39 1 5.2924 -9.4867 -6.9959 40 1 3.3175 -2.5157 -4.3795 41 1 2.7290 -0.1285 -4.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877521155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -94.876210 kcal Electronic energy + Delta-G solvation = -21420.666516 eV Core-core repulsion = 18020.850772 eV Total energy + Delta-G solvation = -3399.815745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.75796 -39.78848 -37.76602 -36.38089 -33.96166 -32.21974 -31.88167 -30.00721 -28.48155 -26.90473 -25.79997 -24.25384 -22.89473 -22.41705 -20.74475 -19.44466 -18.03945 -17.13119 -16.90174 -16.34174 -16.06959 -15.53602 -14.98637 -14.73374 -14.61740 -14.50989 -14.35141 -13.96481 -13.28527 -13.10594 -12.93417 -12.67953 -12.64408 -12.31926 -12.21657 -11.89516 -11.61596 -11.52858 -11.12101 -10.97718 -10.94046 -10.47224 -10.43758 -10.37814 -10.03703 -9.67632 -9.38370 -9.10829 -8.99972 -8.43275 -7.28051 -6.07604 -4.09675 1.15942 1.37539 3.25857 3.33986 3.36793 3.53801 3.60964 4.12007 4.32387 4.39475 4.40147 4.70098 4.87346 4.92704 5.15045 5.27646 5.28753 5.39870 5.44518 5.50036 5.58083 5.70955 5.78980 5.82536 5.87062 6.10016 6.17167 6.22239 6.24815 6.27957 6.33751 6.69806 6.81060 6.92075 6.96745 7.31092 7.38954 7.55017 7.67922 7.81071 7.90705 8.32751 8.96177 9.54574 11.03797 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.002914 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.236554 B = 9606.531546 C =10160.989816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.146 3.854 3 H 0.110 0.890 4 O -0.556 6.556 5 C -0.101 4.101 6 C -0.174 4.174 7 C 0.224 3.776 8 N -0.736 5.736 9 C 0.123 3.877 10 C -0.096 4.096 11 H 0.062 0.938 12 C -0.132 4.132 13 C 0.030 3.970 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.174 4.174 23 C -0.096 4.096 24 C 0.028 3.972 25 F -0.149 7.149 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.375 0.625 30 H 0.126 0.874 31 H 0.399 0.601 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 16.238 9.997 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 H 0.127 0.873 4 O -0.362 6.362 5 C -0.103 4.103 6 C -0.197 4.197 7 C 0.117 3.883 8 N -0.363 5.363 9 C 0.000 4.000 10 C -0.115 4.115 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.008 4.008 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.197 4.197 23 C -0.116 4.116 24 C 0.006 3.994 25 F -0.128 7.128 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.144 0.856 31 H 0.235 0.765 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.152 0.848 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.814 16.682 9.740 20.484 hybrid contribution -0.165 -1.585 0.064 1.595 sum -6.979 15.097 9.804 19.307 Atomic orbital electron populations 1.22447 0.95095 1.02987 1.03056 1.20683 0.93222 0.95980 0.81432 0.87279 1.86621 1.77279 1.29267 1.43006 1.20209 1.00743 0.94525 0.94848 1.20065 1.08191 0.93614 0.97818 1.17878 0.92111 0.84994 0.93290 1.45081 1.71070 1.06398 1.13708 1.21699 0.98115 0.93776 0.86424 1.21445 0.98274 0.91794 0.99971 0.91919 1.21728 0.98219 1.02036 0.96996 1.19085 0.96806 0.94475 0.90393 1.21217 1.46654 0.92518 0.95127 0.92490 1.25016 0.95493 0.98851 0.95099 1.69966 1.47738 1.34840 1.00829 0.86556 0.77739 0.85422 0.78417 1.19760 1.21026 1.21017 1.20599 1.07461 0.93941 0.97666 1.20864 0.98634 0.94741 0.97354 1.17081 1.08830 0.78614 0.94842 1.91421 1.91298 1.32993 1.97061 0.91355 0.91207 0.91939 0.77699 0.85616 0.76550 0.92327 0.92388 0.91696 0.93417 0.95091 0.96434 0.96280 0.93001 0.84821 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.52 37.16 0.35 -1.11 16 2 C 0.15 1.45 3.60 -27.88 -0.10 1.35 16 3 H 0.11 1.12 7.79 -51.93 -0.40 0.72 16 4 O -0.56 -5.58 12.98 -35.23 -0.46 -6.04 16 5 C -0.10 -1.16 5.07 -104.58 -0.53 -1.69 16 6 C -0.17 -1.96 9.15 -39.39 -0.36 -2.32 16 7 C 0.22 2.84 6.65 -83.74 -0.56 2.28 16 8 N -0.74 -9.56 5.47 -58.61 -0.32 -9.89 16 9 C 0.12 1.89 4.30 -4.04 -0.02 1.87 16 10 C -0.10 -1.75 2.37 -90.62 -0.22 -1.96 16 11 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 12 C -0.13 -2.26 8.88 37.16 0.33 -1.93 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 14 C -0.52 -13.75 8.41 -34.44 -0.29 -14.04 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.17 -2.19 9.31 -39.39 -0.37 -2.56 16 23 C -0.10 -1.15 10.02 -39.54 -0.40 -1.54 16 24 C 0.03 0.34 7.24 -39.41 -0.29 0.05 16 25 F -0.15 -1.84 16.56 2.25 0.04 -1.81 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.37 2.56 7.32 45.56 0.33 2.89 16 30 H 0.13 1.13 6.40 -52.49 -0.34 0.79 16 31 H 0.40 4.70 7.67 -40.82 -0.31 4.39 16 32 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 34 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.44 7.18 -51.93 -0.37 0.06 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.13 1.64 6.73 -52.49 -0.35 1.29 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -29.46 339.94 -8.08 -37.53 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.52 Total: 3.91 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.66 Total: -19.54 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.42 Total: -35.15 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.46 Total: -6.04 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.46 -8.08 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.343 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds