Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38139 * 119.97609 * 264.72262 * 5 2 1 7 7 C 1.38857 * 119.94798 * 179.79153 * 6 5 2 8 8 N 1.39827 * 120.05007 * 180.24180 * 7 6 5 9 9 C 1.46502 * 120.00148 * 180.27646 * 8 7 6 10 10 C 1.52993 * 109.47040 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47194 * 54.99605 * 10 9 8 12 12 C 1.53000 * 109.47418 * 294.99798 * 10 9 8 13 13 C 1.53001 * 109.47077 * 174.99632 * 10 9 8 14 14 C 1.50701 * 109.47262 * 185.00126 * 13 10 9 15 15 H 1.07996 * 119.99988 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00235 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99460 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00177 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47074 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47032 * 119.99781 * 18 16 14 21 21 H 1.48496 * 109.47308 * 240.00072 * 18 16 14 22 22 C 1.38897 * 119.90293 * 0.50830 * 7 6 5 23 23 C 1.38099 * 119.95044 * 359.73171 * 22 7 6 24 24 C 1.38448 * 119.97350 * 85.00644 * 5 2 1 25 25 F 1.35094 * 119.95030 * 359.97147 * 24 5 2 26 26 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 27 27 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 28 28 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 29 29 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 30 30 H 1.08001 * 120.02952 * 0.02723 * 6 5 2 31 31 H 0.96999 * 119.99808 * 0.26151 * 8 7 6 32 32 H 1.08997 * 109.46549 * 299.99569 * 9 8 7 33 33 H 1.09005 * 109.47210 * 59.99155 * 9 8 7 34 34 H 1.08996 * 109.47323 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46781 * 300.00060 * 12 10 9 36 36 H 1.08997 * 109.46827 * 59.99628 * 12 10 9 37 37 H 1.09002 * 109.47143 * 304.99750 * 13 10 9 38 38 H 1.09001 * 109.47018 * 64.99953 * 13 10 9 39 39 H 0.97008 * 120.00143 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.02718 * 179.74507 * 22 7 6 41 41 H 1.07993 * 119.97582 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3662 -2.0494 -1.1663 7 6 2.8249 -2.7045 -2.3014 8 7 3.1586 -4.0610 -2.2401 9 6 3.6483 -4.7497 -3.4369 10 6 3.9385 -6.2136 -3.1000 11 1 3.0477 -6.6708 -2.6692 12 6 5.0874 -6.2870 -2.0923 13 6 4.3301 -6.9625 -4.3754 14 6 4.4965 -8.4281 -4.0665 15 1 4.3390 -8.7892 -3.0609 16 6 4.8506 -9.3078 -5.0674 17 7 5.0428 -8.8679 -6.2917 18 14 5.0575 -11.1243 -4.6842 19 1 4.7860 -11.3603 -3.2435 20 1 4.1037 -11.9146 -5.5032 21 1 6.4467 -11.5420 -5.0015 22 6 2.9571 -2.0091 -3.4964 23 6 2.6268 -0.6695 -3.5547 24 6 2.1645 -0.0193 -2.4227 25 9 1.8424 1.2913 -2.4818 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7209 -1.5952 1.2330 30 1 2.2669 -2.5872 -0.2350 31 1 3.0662 -4.5460 -1.4052 32 1 2.8916 -4.6998 -4.2198 33 1 4.5628 -4.2689 -3.7843 34 1 5.2939 -7.3299 -1.8520 35 1 5.9783 -5.8298 -2.5231 36 1 4.8084 -5.7535 -1.1837 37 1 3.5494 -6.8357 -5.1255 38 1 5.2695 -6.5628 -4.7575 39 1 5.2924 -9.4867 -6.9959 40 1 3.3175 -2.5157 -4.3795 41 1 2.7290 -0.1285 -4.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877521155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = -112.653169 kcal Electronic energy + Delta-G solvation = -21421.437383 eV Core-core repulsion = 18020.850772 eV Total energy + Delta-G solvation = -3400.586612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.71228 -40.71022 -38.73747 -37.58777 -35.43593 -33.91740 -32.77848 -30.92582 -29.62752 -28.56502 -27.09560 -25.27446 -24.49397 -23.32962 -21.73116 -20.90215 -18.95274 -18.58426 -18.07761 -17.64468 -16.99152 -16.51789 -16.47733 -16.08528 -15.79044 -15.51753 -15.37467 -14.79470 -14.58287 -14.41614 -14.16607 -13.88138 -13.68935 -13.61131 -13.29824 -13.07466 -12.92543 -12.79506 -12.62639 -12.41524 -12.25001 -11.97617 -11.90955 -11.63416 -11.24143 -11.11933 -11.01459 -10.75095 -10.54303 -9.89365 -8.28741 -8.18147 -6.26770 0.25174 0.42214 1.40216 1.41706 1.53301 2.39087 2.49735 2.68274 3.16436 3.39182 3.47864 3.54468 3.83104 4.05233 4.15671 4.17624 4.19416 4.27714 4.37177 4.44589 4.58674 4.76320 4.77389 4.84049 4.91475 4.94136 5.00242 5.19650 5.21971 5.26304 5.30672 5.32185 5.36173 5.47094 5.52739 5.76731 5.81842 5.87112 6.24359 6.34909 6.73362 6.84330 6.90095 7.41851 8.93978 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.002914 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.236554 B = 9606.531546 C =10160.989816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.103 0.897 4 O -0.566 6.566 5 C -0.102 4.102 6 C -0.169 4.169 7 C 0.212 3.788 8 N -0.731 5.731 9 C 0.139 3.861 10 C -0.085 4.085 11 H 0.065 0.935 12 C -0.126 4.126 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.958 3.042 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.187 4.187 23 C -0.100 4.100 24 C 0.016 3.984 25 F -0.151 7.151 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.389 0.611 30 H 0.151 0.849 31 H 0.408 0.592 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.065 0.935 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 16.262 12.010 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.089 3.911 3 H 0.121 0.879 4 O -0.375 6.375 5 C -0.104 4.104 6 C -0.191 4.191 7 C 0.107 3.893 8 N -0.360 5.360 9 C 0.015 3.985 10 C -0.104 4.104 11 H 0.083 0.917 12 C -0.183 4.183 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.784 3.216 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.210 4.210 23 C -0.120 4.120 24 C -0.005 4.005 25 F -0.130 7.130 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.169 0.831 31 H 0.244 0.756 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.443 16.715 11.783 21.763 hybrid contribution 0.009 -1.514 -0.558 1.614 sum -7.434 15.201 11.225 20.306 Atomic orbital electron populations 1.22399 0.93711 1.03586 1.03354 1.20664 0.94192 0.95480 0.80753 0.87909 1.86600 1.77575 1.30501 1.42776 1.20444 1.00163 0.94674 0.95152 1.20299 1.06966 0.93549 0.98294 1.18007 0.92745 0.84718 0.93866 1.44786 1.71555 1.06581 1.13076 1.21300 0.97910 0.92066 0.87259 1.21201 0.98788 0.92964 0.97413 0.91650 1.21646 0.97364 1.01363 0.97944 1.18969 0.94716 0.94268 0.92490 1.21659 1.45687 0.93925 0.95318 0.91858 1.25913 0.95412 1.03597 0.94972 1.70096 1.49074 1.36449 1.01886 0.85493 0.77580 0.79815 0.78746 1.18451 1.20763 1.20776 1.20694 1.08054 0.94385 0.97872 1.21026 0.98286 0.94612 0.98034 1.17299 1.09153 0.78662 0.95429 1.91413 1.91347 1.33177 1.97109 0.90326 0.91643 0.91197 0.76085 0.83109 0.75575 0.93026 0.92784 0.93416 0.94088 0.91564 0.99005 0.98794 0.92969 0.85131 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.52 71.98 0.69 -1.78 16 2 C 0.15 2.65 3.60 29.85 0.11 2.75 16 3 H 0.10 1.96 7.79 -2.39 -0.02 1.94 16 4 O -0.57 -9.92 12.98 -148.98 -1.93 -11.85 16 5 C -0.10 -2.15 5.07 -19.84 -0.10 -2.25 16 6 C -0.17 -3.39 9.15 22.39 0.20 -3.18 16 7 C 0.21 5.02 6.65 38.17 0.25 5.28 16 8 N -0.73 -17.65 5.47 -339.35 -1.85 -19.51 16 9 C 0.14 4.19 4.30 86.38 0.37 4.56 16 10 C -0.08 -3.05 2.37 -10.80 -0.03 -3.08 16 11 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 12 C -0.13 -4.12 8.88 71.98 0.64 -3.48 16 13 C 0.03 1.62 4.45 29.85 0.13 1.75 16 14 C -0.53 -28.28 8.41 25.60 0.22 -28.07 16 15 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 18 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C -0.19 -4.58 9.31 22.39 0.21 -4.37 16 23 C -0.10 -2.30 10.02 22.30 0.22 -2.07 16 24 C 0.02 0.37 7.24 22.38 0.16 0.53 16 25 F -0.15 -3.61 16.56 44.97 0.74 -2.86 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.39 4.09 7.32 -74.06 -0.54 3.55 16 30 H 0.15 2.18 6.40 -2.91 -0.02 2.16 16 31 H 0.41 8.45 7.67 -92.71 -0.71 7.74 16 32 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 33 H 0.05 1.67 7.95 -2.38 -0.02 1.66 16 34 H 0.05 1.72 6.95 -2.39 -0.02 1.70 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.07 1.69 7.18 -2.39 -0.02 1.68 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.13 3.21 6.73 -2.91 -0.02 3.19 16 41 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -63.10 339.94 2.59 -60.51 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.21 Total: 16.82 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.54 Total: -33.02 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -1.57 Total: -74.68 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.93 Total: -11.85 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.74 Total: -2.86 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.10 2.59 -60.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.146 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds