Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 5 5 C 1.50699 * 109.46790 * 65.00162 * 4 2 1 6 6 H 1.07993 * 120.00794 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99490 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46722 * 60.00717 * 9 7 5 11 11 H 1.48502 * 109.47060 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47315 * 300.00515 * 9 7 5 13 13 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 14 14 N 1.46498 * 109.47059 * 294.99709 * 13 2 1 15 15 C 1.39826 * 120.00008 * 179.72232 * 14 13 2 16 16 C 1.38901 * 120.04709 * 0.02562 * 15 14 13 17 17 C 1.38098 * 119.94799 * 179.78376 * 16 15 14 18 18 C 1.38477 * 120.05150 * 0.49239 * 17 16 15 19 19 F 1.35099 * 119.95447 * 179.76536 * 18 17 16 20 20 C 1.38446 * 120.09849 * 359.74067 * 18 17 16 21 21 C 1.50698 * 119.97433 * 180.02562 * 20 18 17 22 22 H 1.09002 * 109.47486 * 35.01968 * 21 20 18 23 23 C 1.52994 * 109.47157 * 275.01901 * 21 20 18 24 24 O 1.42904 * 109.46877 * 155.02098 * 21 20 18 25 25 C 1.38145 * 120.04929 * 0.02562 * 20 18 17 26 26 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 27 27 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 28 28 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46502 * 184.99774 * 4 2 1 30 30 H 1.08996 * 109.47343 * 304.99842 * 4 2 1 31 31 H 0.97001 * 119.99626 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47066 * 174.99977 * 13 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 1.08002 * 120.02201 * 0.02756 * 16 15 14 36 36 H 1.08009 * 119.97170 * 180.23281 * 17 16 15 37 37 H 1.09005 * 109.47213 * 60.00179 * 23 21 20 38 38 H 1.09001 * 109.47464 * 180.02562 * 23 21 20 39 39 H 1.09000 * 109.47708 * 300.00253 * 23 21 20 40 40 H 0.96697 * 114.00038 * 60.00304 * 24 21 20 41 41 H 1.07993 * 120.02281 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5187 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.0897 1.9236 -5.1870 11 1 1.9935 -0.1372 -6.4622 12 1 0.0184 0.6685 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6525 0.0353 2.4423 15 6 2.0038 -0.4332 3.7120 16 6 2.7208 -1.6157 3.8432 17 6 3.0706 -2.0742 5.0979 18 6 2.6984 -1.3615 6.2254 19 9 3.0376 -1.8144 7.4522 20 6 1.9796 -0.1852 6.0973 21 6 1.5765 0.5884 7.3261 22 1 2.3578 0.5038 8.0814 23 6 0.2682 0.0205 7.8799 24 8 1.3918 1.9635 6.9838 25 6 1.6316 0.2798 4.8438 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2953 31 1 2.9235 -1.8416 -4.7318 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 3.0078 -2.1739 2.9643 36 1 3.6313 -2.9917 5.2002 37 1 0.4091 -1.0284 8.1409 38 1 -0.0236 0.5804 8.7684 39 1 -0.5132 0.1052 7.1247 40 1 0.7096 2.1142 6.3152 41 1 1.0713 1.1976 4.7444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877521156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = -94.796609 kcal Electronic energy + Delta-G solvation = -21422.478446 eV Core-core repulsion = 18022.666153 eV Total energy + Delta-G solvation = -3399.812293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.75669 -39.78875 -37.76623 -36.38136 -33.96109 -32.21859 -31.88209 -30.00659 -28.48169 -26.90729 -25.80139 -24.25448 -22.89245 -22.41658 -20.74494 -19.44562 -18.03825 -17.12906 -16.90158 -16.33873 -16.07282 -15.53578 -14.98291 -14.70647 -14.62276 -14.53287 -14.35550 -13.96195 -13.33012 -13.08954 -12.83242 -12.77388 -12.64756 -12.30006 -12.19313 -11.93463 -11.61122 -11.50771 -11.14425 -10.98162 -10.90755 -10.48878 -10.45025 -10.38405 -10.03039 -9.67666 -9.37889 -9.13096 -8.99921 -8.42374 -7.28058 -6.07077 -4.09382 1.15932 1.37581 3.28234 3.33477 3.34928 3.53789 3.61004 4.12030 4.32360 4.39558 4.40291 4.70053 4.87252 4.92567 5.14997 5.27644 5.28951 5.39758 5.44336 5.49782 5.58183 5.70836 5.78767 5.82188 5.86888 6.09234 6.17056 6.22195 6.24830 6.27454 6.33253 6.69507 6.80977 6.91544 6.96322 7.31195 7.38970 7.54909 7.68068 7.81077 7.90919 8.32932 8.96020 9.54743 11.04248 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002914 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.391503 B = 9606.954417 C =10179.009038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.736 5.736 15 C 0.224 3.776 16 C -0.174 4.174 17 C -0.096 4.096 18 C 0.028 3.972 19 F -0.149 7.149 20 C -0.101 4.101 21 C 0.146 3.854 22 H 0.110 0.890 23 C -0.178 4.178 24 O -0.555 6.555 25 C -0.174 4.174 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.399 0.601 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.375 0.625 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 1.551 20.239 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.363 5.363 15 C 0.117 3.883 16 C -0.197 4.197 17 C -0.116 4.116 18 C 0.006 3.994 19 F -0.128 7.128 20 C -0.103 4.103 21 C 0.087 3.913 22 H 0.127 0.873 23 C -0.236 4.236 24 O -0.362 6.362 25 C -0.197 4.197 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.223 0.777 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.698 1.372 20.384 20.607 hybrid contribution -0.733 0.456 -1.285 1.548 sum -3.431 1.828 19.099 19.491 Atomic orbital electron populations 1.21727 0.95865 1.01138 1.00218 1.21450 0.95673 0.99865 0.94527 0.91886 1.19073 0.96276 0.95532 0.89795 1.21143 1.35193 1.08434 0.90919 0.92595 1.25012 0.95172 0.95066 0.99146 1.69947 1.38665 1.21086 1.23697 0.86669 0.78891 0.80111 0.82408 1.20251 1.21282 1.20258 1.21697 0.99259 0.95227 0.83827 1.45081 1.60835 1.27892 1.02447 1.17877 0.92348 0.92348 0.85694 1.20601 1.04191 0.97378 0.97499 1.20864 0.99803 0.99867 0.91055 1.17080 1.05684 0.96586 0.80019 1.91423 1.91276 1.88936 1.41141 1.20210 0.98858 0.95046 0.96204 1.20682 0.97653 0.80241 0.92744 0.87275 1.22448 0.97095 1.02194 1.01844 1.86623 1.62082 1.24340 1.63117 1.20063 1.07565 1.02051 0.90017 0.95124 0.91699 0.93437 0.96430 0.96301 0.92881 0.92312 0.92399 0.76549 0.84819 0.84952 0.91210 0.91353 0.91951 0.77706 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.88 37.16 0.33 -1.91 16 2 C -0.10 -1.76 2.37 -90.62 -0.22 -1.97 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -13.82 8.41 -34.44 -0.29 -14.11 16 6 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.12 1.89 4.30 -4.04 -0.02 1.88 16 14 N -0.74 -9.57 5.47 -58.61 -0.32 -9.89 16 15 C 0.22 2.84 6.65 -83.74 -0.56 2.28 16 16 C -0.17 -2.20 9.31 -39.39 -0.37 -2.56 16 17 C -0.10 -1.15 10.02 -39.54 -0.40 -1.54 16 18 C 0.03 0.34 7.24 -39.42 -0.29 0.05 16 19 F -0.15 -1.84 16.56 2.25 0.04 -1.81 16 20 C -0.10 -1.16 5.07 -104.58 -0.53 -1.69 16 21 C 0.15 1.45 3.60 -27.89 -0.10 1.35 16 22 H 0.11 1.12 7.79 -51.93 -0.40 0.72 16 23 C -0.18 -1.46 9.52 37.15 0.35 -1.10 16 24 O -0.56 -5.59 12.99 -35.23 -0.46 -6.05 16 25 C -0.17 -1.96 9.15 -39.39 -0.36 -2.32 16 26 H 0.03 0.42 7.18 -51.93 -0.37 0.05 16 27 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 33 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 34 H 0.40 4.70 7.67 -40.82 -0.31 4.39 16 35 H 0.13 1.65 6.73 -52.49 -0.35 1.29 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.37 2.56 7.32 45.56 0.33 2.89 16 41 H 0.13 1.13 6.40 -52.49 -0.34 0.79 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -29.44 339.94 -8.08 -37.52 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.52 Total: 3.96 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.66 Total: -19.54 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.42 Total: -35.20 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.46 Total: -6.05 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.44 -8.08 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.277 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds