Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 5 5 C 1.50699 * 109.46790 * 65.00162 * 4 2 1 6 6 H 1.07993 * 120.00794 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99490 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46722 * 60.00717 * 9 7 5 11 11 H 1.48502 * 109.47060 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47315 * 300.00515 * 9 7 5 13 13 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 14 14 N 1.46498 * 109.47059 * 294.99709 * 13 2 1 15 15 C 1.39826 * 120.00008 * 179.72232 * 14 13 2 16 16 C 1.38901 * 120.04709 * 0.02562 * 15 14 13 17 17 C 1.38098 * 119.94799 * 179.78376 * 16 15 14 18 18 C 1.38477 * 120.05150 * 0.49239 * 17 16 15 19 19 F 1.35099 * 119.95447 * 179.76536 * 18 17 16 20 20 C 1.38446 * 120.09849 * 359.74067 * 18 17 16 21 21 C 1.50698 * 119.97433 * 180.02562 * 20 18 17 22 22 H 1.09002 * 109.47486 * 35.01968 * 21 20 18 23 23 C 1.52994 * 109.47157 * 275.01901 * 21 20 18 24 24 O 1.42904 * 109.46877 * 155.02098 * 21 20 18 25 25 C 1.38145 * 120.04929 * 0.02562 * 20 18 17 26 26 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 27 27 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 28 28 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46502 * 184.99774 * 4 2 1 30 30 H 1.08996 * 109.47343 * 304.99842 * 4 2 1 31 31 H 0.97001 * 119.99626 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47066 * 174.99977 * 13 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 1.08002 * 120.02201 * 0.02756 * 16 15 14 36 36 H 1.08009 * 119.97170 * 180.23281 * 17 16 15 37 37 H 1.09005 * 109.47213 * 60.00179 * 23 21 20 38 38 H 1.09001 * 109.47464 * 180.02562 * 23 21 20 39 39 H 1.09000 * 109.47708 * 300.00253 * 23 21 20 40 40 H 0.96697 * 114.00038 * 60.00304 * 24 21 20 41 41 H 1.07993 * 120.02281 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5187 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.0897 1.9236 -5.1870 11 1 1.9935 -0.1372 -6.4622 12 1 0.0184 0.6685 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6525 0.0353 2.4423 15 6 2.0038 -0.4332 3.7120 16 6 2.7208 -1.6157 3.8432 17 6 3.0706 -2.0742 5.0979 18 6 2.6984 -1.3615 6.2254 19 9 3.0376 -1.8144 7.4522 20 6 1.9796 -0.1852 6.0973 21 6 1.5765 0.5884 7.3261 22 1 2.3578 0.5038 8.0814 23 6 0.2682 0.0205 7.8799 24 8 1.3918 1.9635 6.9838 25 6 1.6316 0.2798 4.8438 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2953 31 1 2.9235 -1.8416 -4.7318 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 3.0078 -2.1739 2.9643 36 1 3.6313 -2.9917 5.2002 37 1 0.4091 -1.0284 8.1409 38 1 -0.0236 0.5804 8.7684 39 1 -0.5132 0.1052 7.1247 40 1 0.7096 2.1142 6.3152 41 1 1.0713 1.1976 4.7444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877521156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = -112.586365 kcal Electronic energy + Delta-G solvation = -21423.249867 eV Core-core repulsion = 18022.666153 eV Total energy + Delta-G solvation = -3400.583715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.71133 -40.71089 -38.73801 -37.58790 -35.43574 -33.91691 -32.77971 -30.92440 -29.62655 -28.56370 -27.09459 -25.27298 -24.49327 -23.32918 -21.73223 -20.90197 -18.95228 -18.58001 -18.07653 -17.64366 -16.99475 -16.55338 -16.44920 -16.07449 -15.78561 -15.52895 -15.37571 -14.79496 -14.59053 -14.40738 -14.16384 -13.85801 -13.69052 -13.61832 -13.29206 -13.08500 -12.91740 -12.77599 -12.63900 -12.39598 -12.24480 -12.04720 -11.87449 -11.63943 -11.22645 -11.13002 -11.03608 -10.74986 -10.52982 -9.89319 -8.28809 -8.17852 -6.26766 0.25136 0.42212 1.41513 1.43112 1.50762 2.39181 2.49750 2.68261 3.16469 3.39179 3.47848 3.54508 3.83049 4.05160 4.16308 4.17188 4.19402 4.27793 4.37152 4.44645 4.58707 4.76377 4.77349 4.84090 4.91522 4.94277 5.00264 5.19803 5.21979 5.26260 5.30641 5.32104 5.36167 5.47354 5.52418 5.76727 5.81843 5.87019 6.24304 6.34836 6.73496 6.84270 6.89776 7.41803 8.93871 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002914 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.391503 B = 9606.954417 C =10179.009038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.139 3.861 14 N -0.731 5.731 15 C 0.212 3.788 16 C -0.187 4.187 17 C -0.100 4.100 18 C 0.016 3.984 19 F -0.151 7.151 20 C -0.102 4.102 21 C 0.148 3.852 22 H 0.103 0.897 23 C -0.173 4.173 24 O -0.566 6.566 25 C -0.169 4.169 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.041 0.959 29 H -0.010 1.010 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.408 0.592 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.389 0.611 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 3.018 21.203 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.015 3.985 14 N -0.360 5.360 15 C 0.107 3.893 16 C -0.210 4.210 17 C -0.120 4.120 18 C -0.005 4.005 19 F -0.130 7.130 20 C -0.104 4.104 21 C 0.089 3.911 22 H 0.121 0.879 23 C -0.230 4.230 24 O -0.375 6.375 25 C -0.191 4.191 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.244 0.756 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.239 0.761 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.959 2.858 21.372 21.923 hybrid contribution -0.319 -0.014 -1.508 1.541 sum -4.278 2.843 19.865 20.518 Atomic orbital electron populations 1.21643 0.94433 1.01062 1.01123 1.21206 0.96732 0.99245 0.93234 0.91777 1.18958 0.94493 0.94774 0.92150 1.21608 1.34568 1.08698 0.91983 0.91851 1.25915 0.95278 0.96041 1.02597 1.70085 1.40181 1.22875 1.24358 0.85602 0.78940 0.78796 0.78340 1.19317 1.21292 1.19200 1.21297 0.98569 0.94980 0.83683 1.44785 1.61397 1.28059 1.01754 1.18007 0.92863 0.92685 0.85781 1.20696 1.04769 0.97801 0.97741 1.21027 0.99762 1.00425 0.90742 1.17298 1.06089 0.97150 0.80008 1.91415 1.91348 1.89026 1.41259 1.20446 0.98234 0.94770 0.96976 1.20666 0.98361 0.80186 0.91896 0.87945 1.22397 0.96279 1.01922 1.02425 1.86601 1.62899 1.24175 1.63802 1.20297 1.07005 1.02554 0.89255 0.91473 0.93450 0.94008 0.99117 0.98736 0.92948 0.93213 0.92608 0.75572 0.85132 0.83574 0.91627 0.90339 0.91149 0.76082 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.88 71.98 0.64 -3.42 16 2 C -0.09 -3.07 2.37 -10.79 -0.03 -3.10 16 3 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.03 1.66 4.45 29.85 0.13 1.79 16 5 C -0.53 -28.48 8.41 25.60 0.22 -28.26 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 9 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.14 4.20 4.30 86.38 0.37 4.57 16 14 N -0.73 -17.67 5.47 -339.35 -1.86 -19.52 16 15 C 0.21 5.03 6.65 38.17 0.25 5.28 16 16 C -0.19 -4.58 9.31 22.40 0.21 -4.38 16 17 C -0.10 -2.30 10.02 22.29 0.22 -2.07 16 18 C 0.02 0.37 7.24 22.38 0.16 0.53 16 19 F -0.15 -3.61 16.56 44.97 0.74 -2.86 16 20 C -0.10 -2.15 5.07 -19.84 -0.10 -2.25 16 21 C 0.15 2.64 3.60 29.85 0.11 2.75 16 22 H 0.10 1.96 7.79 -2.39 -0.02 1.95 16 23 C -0.17 -2.44 9.52 71.98 0.68 -1.75 16 24 O -0.57 -9.97 12.99 -148.98 -1.94 -11.91 16 25 C -0.17 -3.39 9.15 22.39 0.20 -3.18 16 26 H 0.07 1.68 7.18 -2.39 -0.02 1.66 16 27 H 0.05 1.69 6.95 -2.39 -0.02 1.67 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.05 1.59 7.96 -2.38 -0.02 1.57 16 33 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 34 H 0.41 8.46 7.67 -92.71 -0.71 7.74 16 35 H 0.13 3.21 6.73 -2.91 -0.02 3.19 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.39 4.10 7.32 -74.06 -0.54 3.56 16 41 H 0.15 2.18 6.40 -2.91 -0.02 2.16 16 Total: -1.00 -63.21 339.94 2.59 -60.61 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.21 Total: 16.95 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 3.54 Total: -33.06 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.57 Total: -74.81 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.94 Total: -11.91 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.74 Total: -2.86 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -63.21 2.59 -60.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.975 kcal (2) G-P(sol) polarization free energy of solvation -63.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds