Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.46867 * 2 1 4 4 O 1.42903 * 109.46762 * 240.00239 * 2 1 3 5 5 C 1.50697 * 109.46956 * 120.00292 * 2 1 3 6 6 C 1.38141 * 119.97713 * 95.00071 * 5 2 1 7 7 C 1.38850 * 119.95406 * 179.97438 * 6 5 2 8 8 N 1.39826 * 120.05406 * 179.97438 * 7 6 5 9 9 C 1.46494 * 119.99958 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38907 * 119.90040 * 0.25323 * 7 6 5 23 23 C 1.38095 * 119.94536 * 359.51750 * 22 7 6 24 24 C 1.38445 * 119.97558 * 275.02034 * 5 2 1 25 25 F 1.35095 * 119.94635 * 359.97438 * 24 5 2 26 26 H 1.08994 * 109.46909 * 299.99704 * 1 2 3 27 27 H 1.08998 * 109.46816 * 59.99944 * 1 2 3 28 28 H 1.09005 * 109.47101 * 179.97438 * 1 2 3 29 29 H 0.96699 * 113.99832 * 300.00024 * 4 2 1 30 30 H 1.08009 * 120.02387 * 0.02562 * 6 5 2 31 31 H 0.96998 * 119.99219 * 359.97438 * 8 7 6 32 32 H 1.08997 * 109.47647 * 59.99994 * 9 8 7 33 33 H 1.09001 * 109.47420 * 299.99513 * 9 8 7 34 34 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 35 35 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 38 38 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08000 * 120.02696 * 179.74582 * 22 7 6 41 41 H 1.08000 * 119.97209 * 180.22925 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0324 -0.7105 1.2304 6 6 2.3608 -2.0508 1.1678 7 6 2.8240 -2.7048 2.3016 8 7 3.1565 -4.0616 2.2407 9 6 3.6446 -4.7506 3.4379 10 6 3.9325 -6.2152 3.1016 11 1 3.0411 -6.6711 2.6709 12 6 5.0817 -6.2908 2.0942 13 6 4.3228 -6.9641 4.3774 14 6 4.4867 -8.4302 4.0691 15 1 4.3288 -8.7914 3.0636 16 6 4.8383 -9.3102 5.0705 17 7 5.0358 -8.8695 6.2938 18 14 5.0422 -11.1272 4.6881 19 1 5.4267 -11.8533 5.9252 20 1 3.7601 -11.6716 4.1729 21 1 6.1017 -11.3013 3.6624 22 6 2.9512 -2.0106 3.4981 23 6 2.6262 -0.6696 3.5549 24 6 2.1640 -0.0195 2.4229 25 9 1.8423 1.2913 2.4818 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7210 -1.5952 -1.2330 30 1 2.2580 -2.5895 0.2373 31 1 3.0632 -4.5467 1.4060 32 1 2.8876 -4.6999 4.2204 33 1 4.5594 -4.2707 3.7857 34 1 5.9731 -5.8348 2.5250 35 1 5.2864 -7.3341 1.8543 36 1 4.8037 -5.7572 1.1853 37 1 3.5421 -6.8358 5.1273 38 1 5.2626 -6.5659 4.7595 39 1 4.9301 -7.9259 6.4923 40 1 3.3074 -2.5183 4.3822 41 1 2.7284 -0.1286 4.4839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877521157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -116.979055 kcal Electronic energy + Delta-G solvation = -21457.932466 eV Core-core repulsion = 18057.158270 eV Total energy + Delta-G solvation = -3400.774196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.74641 -40.75940 -38.81691 -37.70789 -35.67468 -33.95724 -32.81191 -30.93337 -29.54078 -28.36196 -27.11014 -25.29387 -24.57726 -23.37274 -21.84338 -21.11702 -19.06499 -18.85304 -18.17032 -17.71494 -17.02768 -16.52618 -16.25405 -15.88983 -15.70440 -15.60808 -15.44495 -15.13685 -14.83021 -14.59215 -14.09793 -13.84649 -13.74647 -13.52614 -13.46764 -13.07987 -12.97303 -12.92829 -12.54418 -12.43260 -11.99875 -11.95036 -11.94016 -11.73979 -11.44312 -11.20536 -10.81250 -10.61959 -10.52318 -9.93441 -8.64858 -8.34542 -6.34857 0.20873 0.37764 1.53441 1.61086 1.79755 2.38570 2.58798 2.63799 3.18982 3.35850 3.44285 3.51122 3.78655 3.93645 4.05918 4.12929 4.14754 4.21254 4.26738 4.39312 4.53386 4.64870 4.69296 4.77723 4.80752 4.88124 4.95570 5.02126 5.17087 5.18304 5.20643 5.25773 5.28669 5.32342 5.40318 5.58274 5.75974 6.02762 6.22315 6.26271 6.61968 6.70711 6.77958 7.45849 8.76203 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033359 B = 0.002924 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.160028 B = 9573.221197 C =10128.253631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.104 0.896 4 O -0.566 6.566 5 C -0.102 4.102 6 C -0.168 4.168 7 C 0.211 3.789 8 N -0.732 5.732 9 C 0.139 3.861 10 C -0.079 4.079 11 H 0.064 0.936 12 C -0.125 4.125 13 C 0.018 3.982 14 C -0.606 4.606 15 H 0.055 0.945 16 C -0.041 4.041 17 N -0.943 5.943 18 Si 1.113 2.887 19 H -0.287 1.287 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.187 4.187 23 C -0.100 4.100 24 C 0.017 3.983 25 F -0.151 7.151 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.388 0.612 30 H 0.152 0.848 31 H 0.408 0.592 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.068 0.932 37 H -0.012 1.012 38 H -0.010 1.010 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 16.528 -12.639 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.089 3.911 3 H 0.121 0.879 4 O -0.374 6.374 5 C -0.104 4.104 6 C -0.190 4.190 7 C 0.106 3.894 8 N -0.361 5.361 9 C 0.015 3.985 10 C -0.098 4.098 11 H 0.083 0.917 12 C -0.182 4.182 13 C -0.020 4.020 14 C -0.644 4.644 15 H 0.073 0.927 16 C -0.239 4.239 17 N -0.581 5.581 18 Si 0.935 3.065 19 H -0.213 1.213 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.210 4.210 23 C -0.119 4.119 24 C -0.004 4.004 25 F -0.130 7.130 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.169 0.831 31 H 0.244 0.756 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.006 0.994 38 H 0.008 0.992 39 H 0.065 0.935 40 H 0.148 0.852 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.282 15.593 -11.911 20.930 hybrid contribution -0.530 1.016 -0.070 1.148 sum -7.811 16.609 -11.982 21.919 Atomic orbital electron populations 1.22403 0.93681 1.03587 1.03391 1.20670 0.94211 0.95498 0.80720 0.87853 1.86602 1.77564 1.30498 1.42770 1.20454 1.00127 0.94627 0.95186 1.20301 1.06857 0.93549 0.98327 1.18004 0.92845 0.84643 0.93925 1.44747 1.71751 1.06600 1.12969 1.21286 0.97946 0.91876 0.87400 1.21087 0.98836 0.92918 0.96939 0.91744 1.21637 0.97227 1.01374 0.98009 1.19135 0.94095 0.95261 0.93508 1.22427 1.50364 0.94174 0.97441 0.92690 1.27327 0.93304 1.10387 0.92835 1.70921 1.48456 1.17073 1.21601 0.82974 0.77798 0.69952 0.75760 1.21319 1.19425 1.19443 1.20686 1.08163 0.94403 0.97757 1.21029 0.98273 0.94560 0.98083 1.17299 1.09006 0.78683 0.95395 1.91417 1.91326 1.33126 1.97104 0.91622 0.90286 0.91213 0.76093 0.83096 0.75566 0.93048 0.92731 0.94117 0.93508 0.91323 0.99395 0.99162 0.93511 0.85189 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.52 71.98 0.69 -1.75 16 2 C 0.15 2.62 3.60 29.85 0.11 2.72 16 3 H 0.10 1.95 7.79 -2.39 -0.02 1.93 16 4 O -0.57 -9.84 12.99 -148.98 -1.94 -11.77 16 5 C -0.10 -2.12 5.07 -19.84 -0.10 -2.22 16 6 C -0.17 -3.35 9.15 22.39 0.20 -3.14 16 7 C 0.21 4.97 6.65 38.17 0.25 5.22 16 8 N -0.73 -17.64 5.47 -339.35 -1.85 -19.50 16 9 C 0.14 4.18 4.30 86.38 0.37 4.56 16 10 C -0.08 -2.86 2.37 -10.79 -0.03 -2.89 16 11 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.13 -4.16 8.88 71.98 0.64 -3.52 16 13 C 0.02 0.85 3.76 29.85 0.11 0.97 16 14 C -0.61 -32.92 8.41 25.60 0.22 -32.71 16 15 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 16 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 17 N -0.94 -57.67 13.65 21.45 0.29 -57.38 16 18 Si 1.11 49.15 29.90 68.60 2.05 51.20 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 C -0.19 -4.54 9.31 22.40 0.21 -4.33 16 23 C -0.10 -2.26 10.02 22.29 0.22 -2.04 16 24 C 0.02 0.40 7.24 22.38 0.16 0.56 16 25 F -0.15 -3.55 16.56 44.97 0.74 -2.80 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.39 4.04 7.32 -74.06 -0.54 3.50 16 30 H 0.15 2.17 6.40 -2.91 -0.02 2.15 16 31 H 0.41 8.49 7.67 -92.71 -0.71 7.78 16 32 H 0.05 1.60 7.94 -2.39 -0.02 1.59 16 33 H 0.05 1.67 7.96 -2.39 -0.02 1.66 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.72 6.95 -2.39 -0.02 1.71 16 36 H 0.07 1.78 7.18 -2.39 -0.02 1.76 16 37 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 38 H -0.01 -0.52 8.00 -2.39 -0.02 -0.54 16 39 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 40 H 0.13 3.15 6.73 -2.91 -0.02 3.13 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -64.97 338.63 2.71 -62.26 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.11 Total: 18.43 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.52 Total: -40.44 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -1.56 Total: -76.87 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.94 Total: -11.77 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.74 Total: -2.80 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Total: -64.97 2.71 -62.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.716 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds