Wall clock time and date at job start Tue Mar 31 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38139 * 119.97609 * 264.72262 * 5 2 1 7 7 C 1.38865 * 119.95076 * 179.76976 * 6 5 2 8 8 N 1.39819 * 120.05198 * 180.27791 * 7 6 5 9 9 C 1.46500 * 119.99683 * 180.25301 * 8 7 6 10 10 C 1.53003 * 109.46530 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47214 * 304.99875 * 10 9 8 12 12 C 1.52996 * 109.47299 * 65.00474 * 10 9 8 13 13 C 1.53005 * 109.46957 * 184.99958 * 10 9 8 14 14 C 1.50703 * 109.47169 * 174.99744 * 13 10 9 15 15 H 1.07995 * 119.99437 * 0.02562 * 14 13 10 16 16 C 1.37872 * 119.99574 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99638 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00432 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47246 * 90.00039 * 18 16 14 20 20 H 1.48505 * 109.47251 * 209.99823 * 18 16 14 21 21 H 1.48499 * 109.47260 * 329.99872 * 18 16 14 22 22 C 1.38902 * 119.89722 * 0.53226 * 7 6 5 23 23 C 1.38100 * 119.95119 * 359.72731 * 22 7 6 24 24 C 1.38448 * 119.97350 * 85.00644 * 5 2 1 25 25 F 1.35094 * 119.95030 * 359.97147 * 24 5 2 26 26 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 27 27 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 28 28 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 29 29 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 30 30 H 1.07997 * 120.02850 * 0.02562 * 6 5 2 31 31 H 0.97001 * 119.99977 * 0.25885 * 8 7 6 32 32 H 1.08996 * 109.47105 * 299.99627 * 9 8 7 33 33 H 1.08992 * 109.47308 * 60.00502 * 9 8 7 34 34 H 1.09005 * 109.47060 * 299.99678 * 12 10 9 35 35 H 1.08994 * 109.47561 * 59.99530 * 12 10 9 36 36 H 1.08999 * 109.47344 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.46970 * 295.00492 * 13 10 9 38 38 H 1.09005 * 109.46659 * 54.99726 * 13 10 9 39 39 H 0.97005 * 119.99939 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.02674 * 179.70229 * 22 7 6 41 41 H 1.07997 * 119.97488 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3662 -2.0494 -1.1663 7 6 2.8245 -2.7048 -2.3015 8 7 3.1575 -4.0613 -2.2404 9 6 3.6462 -4.7502 -3.4375 10 6 3.9345 -6.2146 -3.1010 11 1 4.6244 -6.2649 -2.2585 12 6 2.6278 -6.9203 -2.7331 13 6 4.5614 -6.9030 -4.3152 14 6 4.9580 -8.3093 -3.9463 15 1 4.7802 -8.6755 -2.9460 16 6 5.5476 -9.1281 -4.8858 17 7 5.8933 -10.3556 -4.5639 18 14 5.8556 -8.4943 -6.6157 19 1 7.2003 -7.8676 -6.6812 20 1 5.7891 -9.6248 -7.5763 21 1 4.8223 -7.4865 -6.9650 22 6 2.9567 -2.0092 -3.4966 23 6 2.6268 -0.6695 -3.5547 24 6 2.1645 -0.0193 -2.4227 25 9 1.8424 1.2913 -2.4818 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7209 -1.5952 1.2330 30 1 2.2670 -2.5871 -0.2350 31 1 3.0649 -4.5464 -1.4055 32 1 2.8892 -4.6999 -4.2201 33 1 4.5608 -4.2700 -3.7851 34 1 2.1812 -6.4299 -1.8680 35 1 1.9380 -6.8701 -3.5755 36 1 2.8333 -7.9635 -2.4929 37 1 3.8383 -6.9313 -5.1303 38 1 5.4443 -6.3477 -4.6320 39 1 6.3085 -10.9317 -5.2248 40 1 3.3175 -2.5157 -4.3796 41 1 2.7298 -0.1282 -4.4835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877521158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:57 Heat of formation + Delta-G solvation = -91.028396 kcal Electronic energy + Delta-G solvation = -21477.506904 eV Core-core repulsion = 18077.858013 eV Total energy + Delta-G solvation = -3399.648891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.80795 -39.84602 -37.82712 -36.48548 -34.02502 -32.23752 -31.93886 -30.09041 -28.68060 -27.38348 -25.87330 -24.28168 -22.63083 -22.43878 -20.74440 -19.47530 -18.08999 -17.27358 -17.01392 -16.63258 -16.11103 -15.59211 -15.10716 -14.81601 -14.63807 -14.56962 -14.12179 -14.01062 -13.41405 -13.26517 -12.95461 -12.85003 -12.71446 -12.37667 -12.26470 -12.08337 -11.91300 -11.57648 -11.19859 -11.12303 -10.91658 -10.58456 -10.43708 -10.16407 -9.84947 -9.77592 -9.67677 -9.20528 -9.05515 -8.60551 -7.34959 -6.10869 -4.09313 1.10207 1.31655 3.25427 3.33660 3.35450 3.45833 3.55104 4.08825 4.27626 4.34938 4.38760 4.64368 4.83908 4.88989 5.08816 5.20551 5.22363 5.31594 5.37572 5.44171 5.47008 5.64653 5.71876 5.74406 5.82093 5.98402 6.10536 6.16504 6.17202 6.18632 6.23562 6.57011 6.71448 6.74906 6.91440 7.10476 7.26861 7.29237 7.32867 7.70295 7.74382 8.45691 8.93151 9.51150 11.02305 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.003119 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.219237 B = 8976.343904 C = 9635.106390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.146 3.854 3 H 0.110 0.890 4 O -0.555 6.555 5 C -0.101 4.101 6 C -0.172 4.172 7 C 0.224 3.776 8 N -0.735 5.735 9 C 0.121 3.879 10 C -0.087 4.087 11 H 0.069 0.931 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.518 4.518 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.175 4.175 23 C -0.097 4.097 24 C 0.029 3.971 25 F -0.148 7.148 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.375 0.625 30 H 0.127 0.873 31 H 0.401 0.599 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.263 0.737 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 19.628 6.007 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 H 0.127 0.873 4 O -0.361 6.361 5 C -0.103 4.103 6 C -0.195 4.195 7 C 0.117 3.883 8 N -0.362 5.362 9 C -0.002 4.002 10 C -0.106 4.106 11 H 0.087 0.913 12 C -0.191 4.191 13 C -0.044 4.044 14 C -0.556 4.556 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.198 4.198 23 C -0.116 4.116 24 C 0.007 3.993 25 F -0.127 7.127 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.145 0.855 31 H 0.236 0.764 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.696 19.963 5.852 22.952 hybrid contribution -0.045 -0.374 -0.952 1.024 sum -9.741 19.590 4.900 22.420 Atomic orbital electron populations 1.22448 0.95069 1.02994 1.03077 1.20687 0.93238 0.95998 0.81420 0.87256 1.86627 1.77261 1.29282 1.42963 1.20226 1.00650 0.94522 0.94875 1.20076 1.08004 0.93610 0.97838 1.17868 0.92186 0.84925 0.93308 1.45022 1.71263 1.06358 1.13606 1.21706 0.98105 0.93725 0.86707 1.21249 0.97631 0.90716 1.01036 0.91279 1.21732 0.96331 1.01687 0.99355 1.19567 0.95319 0.96484 0.93012 1.21069 1.39601 0.95358 0.99553 0.90817 1.25023 0.95057 0.94737 0.98657 1.69909 1.42141 1.07136 1.34953 0.86805 0.79096 0.78688 0.84835 1.20294 1.21391 1.19026 1.20575 1.07616 0.93961 0.97613 1.20858 0.98675 0.94724 0.97367 1.17085 1.08723 0.78628 0.94828 1.91424 1.91278 1.32969 1.97057 0.91314 0.91224 0.91933 0.77675 0.85529 0.76382 0.92401 0.92366 0.94859 0.93485 0.91163 0.96349 0.96892 0.92687 0.84946 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.52 37.16 0.35 -1.06 16 2 C 0.15 1.40 3.60 -27.88 -0.10 1.30 16 3 H 0.11 1.09 7.79 -51.93 -0.40 0.69 16 4 O -0.56 -5.45 12.98 -35.23 -0.46 -5.90 16 5 C -0.10 -1.11 5.07 -104.58 -0.53 -1.64 16 6 C -0.17 -1.86 9.15 -39.39 -0.36 -2.22 16 7 C 0.22 2.70 6.65 -83.74 -0.56 2.14 16 8 N -0.74 -9.06 5.47 -58.61 -0.32 -9.38 16 9 C 0.12 1.73 4.30 -4.04 -0.02 1.71 16 10 C -0.09 -1.52 2.37 -90.62 -0.22 -1.74 16 11 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.13 -2.21 8.88 37.16 0.33 -1.88 16 13 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 14 C -0.52 -13.91 8.96 -34.44 -0.31 -14.22 16 15 H 0.07 2.13 7.30 -52.49 -0.38 1.74 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 22 C -0.17 -2.08 9.31 -39.39 -0.37 -2.45 16 23 C -0.10 -1.09 10.02 -39.54 -0.40 -1.49 16 24 C 0.03 0.34 7.24 -39.41 -0.29 0.05 16 25 F -0.15 -1.78 16.56 2.25 0.04 -1.74 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.37 2.47 7.32 45.56 0.33 2.80 16 30 H 0.13 1.09 6.40 -52.49 -0.34 0.75 16 31 H 0.40 4.51 7.67 -40.82 -0.31 4.19 16 32 H 0.06 0.82 7.95 -51.93 -0.41 0.40 16 33 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 34 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.33 6.95 -51.93 -0.36 0.97 16 37 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 1.51 6.73 -52.49 -0.35 1.15 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -30.06 336.34 -7.70 -37.76 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.49 Total: 4.13 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.65 Total: -19.94 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.45 Total: -35.71 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.46 Total: -5.90 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.06 -7.70 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.265 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds