Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.36000 * 117.00335 * 180.02562 * 3 2 1 5 5 C 1.38692 * 119.97835 * 180.02562 * 4 3 2 6 6 C 1.38151 * 120.05550 * 179.97438 * 5 4 3 7 7 C 1.38780 * 120.00455 * 359.97438 * 6 5 4 8 8 N 1.40116 * 120.02276 * 179.97438 * 7 6 5 9 9 C 1.46495 * 120.00093 * 0.02562 * 8 7 6 10 10 C 1.53008 * 109.47027 * 180.02562 * 9 8 7 11 11 H 1.08995 * 109.46516 * 304.99382 * 10 9 8 12 12 C 1.52998 * 109.47168 * 64.99386 * 10 9 8 13 13 C 1.53000 * 109.47072 * 184.99705 * 10 9 8 14 14 C 1.50697 * 109.47133 * 174.99346 * 13 10 9 15 15 H 1.08002 * 119.99981 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99792 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00508 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99690 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46916 * 60.00014 * 18 16 14 20 20 H 1.48497 * 109.46962 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47170 * 300.00302 * 18 16 14 22 22 C 1.39028 * 119.94951 * 359.97438 * 7 6 5 23 23 F 1.35098 * 120.02977 * 180.02562 * 22 7 6 24 24 C 1.38275 * 119.94687 * 359.74649 * 22 7 6 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07998 * 119.96808 * 359.97438 * 5 4 3 31 31 H 1.08003 * 119.99934 * 180.02562 * 6 5 4 32 32 H 0.96999 * 119.99771 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46843 * 299.99361 * 9 8 7 34 34 H 1.08992 * 109.47660 * 59.99775 * 9 8 7 35 35 H 1.08998 * 109.47324 * 300.00359 * 12 10 9 36 36 H 1.09002 * 109.46753 * 60.00515 * 12 10 9 37 37 H 1.09005 * 109.46722 * 179.97438 * 12 10 9 38 38 H 1.08995 * 109.47035 * 294.99678 * 13 10 9 39 39 H 1.09008 * 109.46904 * 54.99901 * 13 10 9 40 40 H 0.96996 * 120.00249 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.01116 * 180.27884 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 3.8842 2.8073 0.0000 6 6 5.2536 2.9902 -0.0001 7 6 6.1005 1.8908 0.0000 8 7 7.4894 2.0759 -0.0006 9 6 8.0480 3.4302 -0.0006 10 6 9.5760 3.3516 -0.0019 11 1 9.9092 2.7442 0.8395 12 6 10.0530 2.7169 -1.3098 13 6 10.1592 4.7605 0.1237 14 6 11.6587 4.6745 0.2461 15 1 12.1470 3.7112 0.2349 16 6 12.4073 5.8255 0.3712 17 7 11.8129 6.9985 0.3843 18 14 14.2662 5.7188 0.5222 19 1 14.8238 5.0576 -0.6850 20 1 14.8322 7.0862 0.6443 21 1 14.6203 4.9275 1.7280 22 6 5.5699 0.6058 0.0005 23 9 6.3929 -0.4656 0.0011 24 6 4.1990 0.4251 0.0064 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2255 3.6631 0.0004 31 1 5.6650 3.9888 0.0008 32 1 8.0811 1.3072 -0.0010 33 1 7.7112 3.9620 -0.8905 34 1 7.7119 3.9619 0.8895 35 1 9.6375 1.7132 -1.3993 36 1 9.7197 3.3245 -2.1512 37 1 11.1416 2.6614 -1.3108 38 1 9.8996 5.3414 -0.7613 39 1 9.7496 5.2456 1.0098 40 1 12.3395 7.8082 0.4727 41 1 3.7857 -0.5727 0.0114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877592814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = -79.676703 kcal Electronic energy + Delta-G solvation = -21229.216146 eV Core-core repulsion = 17830.059501 eV Total energy + Delta-G solvation = -3399.156645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.76850 -40.09998 -38.19938 -36.30301 -33.82024 -32.20283 -31.63939 -30.60340 -28.33959 -26.82633 -25.77948 -24.14260 -22.87815 -22.38559 -21.20966 -19.40181 -18.54226 -17.14956 -16.75607 -16.41625 -16.31864 -15.92673 -15.52398 -14.65249 -14.48289 -14.36739 -14.19395 -13.97135 -13.46655 -13.41534 -12.91944 -12.69841 -12.67253 -12.30641 -12.21603 -11.81472 -11.65597 -11.52848 -11.16046 -11.06692 -10.93322 -10.79305 -10.43067 -10.37773 -9.92299 -9.44103 -9.31803 -9.08450 -8.92228 -8.38614 -7.03333 -6.03326 -4.05243 1.12962 1.50515 3.07473 3.31160 3.35992 3.37948 3.61677 3.66584 4.27281 4.43451 4.61111 4.63966 4.79007 4.92396 4.99087 5.09821 5.27920 5.32513 5.45202 5.48385 5.57053 5.65551 5.70600 5.82059 5.89462 6.02772 6.12759 6.19075 6.21002 6.34338 6.40178 6.59358 6.81886 6.97992 7.01706 7.27027 7.46431 7.59463 7.73173 7.88504 7.95010 8.37516 9.00069 9.58541 11.07997 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.042977 B = 0.002748 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.347927 B =10187.705103 C =10691.716056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.086 3.914 5 C -0.106 4.106 6 C -0.137 4.137 7 C 0.169 3.831 8 N -0.738 5.738 9 C 0.127 3.873 10 C -0.096 4.096 11 H 0.062 0.938 12 C -0.133 4.133 13 C 0.031 3.969 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.045 3.955 23 F -0.143 7.143 24 C -0.194 4.194 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.401 0.599 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -12.922 -1.307 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.040 3.960 5 C -0.125 4.125 6 C -0.160 4.160 7 C 0.063 3.937 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.115 4.115 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.007 4.007 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.021 3.979 23 F -0.122 7.122 24 C -0.214 4.214 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.236 0.764 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.663 -12.412 -1.296 23.289 hybrid contribution 1.549 -0.735 0.098 1.717 sum -18.114 -13.147 -1.198 22.414 Atomic orbital electron populations 1.21763 0.92904 1.02691 1.03486 1.22721 0.95716 0.82451 1.01231 1.86068 1.18689 1.28635 1.89691 1.18359 0.82042 0.93212 1.02430 1.20241 0.94430 0.94799 1.03016 1.20459 0.91677 0.97984 1.05923 1.17871 0.85786 0.91771 0.98223 1.44951 1.01679 1.09086 1.81071 1.21670 0.95431 0.81916 1.00655 1.21444 0.90736 1.01626 0.97690 0.91928 1.21728 1.02064 0.97889 0.97317 1.19077 0.95488 0.88755 0.97360 1.21147 0.91842 0.92482 1.50062 0.92609 1.25011 0.98517 0.95513 0.95407 1.69941 1.35606 0.97445 1.50426 0.86671 0.85736 0.77033 0.78636 1.20270 1.21312 1.20281 1.16798 0.87403 0.81845 1.11839 1.91434 1.71928 1.54103 1.94692 1.20858 0.91816 0.99362 1.09381 0.90558 0.91547 0.91546 0.92262 0.92259 0.84758 0.84086 0.76375 0.92424 0.92347 0.95085 0.93423 0.91716 0.96261 0.96403 0.92918 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.55 10.14 -19.74 -0.20 -3.75 16 4 C 0.09 1.05 6.69 -39.24 -0.26 0.79 16 5 C -0.11 -1.27 9.98 -39.45 -0.39 -1.66 16 6 C -0.14 -1.80 9.31 -39.41 -0.37 -2.16 16 7 C 0.17 2.43 6.66 -83.58 -0.56 1.87 16 8 N -0.74 -11.08 5.47 -58.52 -0.32 -11.40 16 9 C 0.13 2.07 4.31 -4.04 -0.02 2.05 16 10 C -0.10 -1.85 2.37 -90.62 -0.22 -2.07 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.13 -2.40 8.88 37.16 0.33 -2.07 16 13 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 14 C -0.52 -14.06 8.41 -34.44 -0.29 -14.34 16 15 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.05 0.63 7.31 -39.28 -0.29 0.34 16 23 F -0.14 -2.05 16.64 2.25 0.04 -2.01 16 24 C -0.19 -2.36 9.01 -39.40 -0.35 -2.72 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 29 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.74 6.73 -52.48 -0.35 1.39 16 32 H 0.40 5.92 7.14 -40.82 -0.29 5.63 16 33 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 34 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 1.35 6.29 -52.49 -0.33 1.02 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -29.45 340.90 -7.90 -37.35 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.22 Total: 1.68 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -2.05 Total: -17.74 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.42 Total: -37.00 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.75 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.45 -7.90 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877592814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.330 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds