Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46895 * 109.47048 * 2 1 4 4 C 1.46900 * 111.00054 * 72.15356 * 3 2 1 5 5 C 1.53002 * 109.47258 * 199.60346 * 4 3 2 6 6 O 1.42908 * 109.47058 * 64.98179 * 5 4 3 7 7 C 1.42894 * 113.99706 * 184.85213 * 6 5 4 8 8 C 1.50703 * 109.47056 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00185 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00176 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00243 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46929 * 60.00081 * 12 10 8 14 14 H 1.48497 * 109.47283 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47075 * 300.00436 * 12 10 8 16 16 C 1.39849 * 111.00137 * 196.09915 * 3 2 1 17 17 C 1.38831 * 120.08222 * 296.32521 * 16 3 2 18 18 C 1.38149 * 119.95072 * 180.27955 * 17 16 3 19 19 C 1.38280 * 120.11063 * 359.46117 * 18 17 16 20 20 C 1.38288 * 120.15822 * 0.24138 * 19 18 17 21 21 C 1.50707 * 119.97186 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.05056 * 0.03802 * 20 19 18 23 23 F 1.35106 * 120.05668 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.46986 * 181.42363 * 1 2 3 25 25 H 1.08997 * 109.47303 * 301.42407 * 1 2 3 26 26 H 1.09002 * 109.47470 * 61.42397 * 1 2 3 27 27 H 1.09007 * 109.47209 * 240.00517 * 2 1 3 28 28 H 1.09004 * 109.47554 * 120.00536 * 2 1 3 29 29 H 1.09003 * 109.46710 * 319.60196 * 4 3 2 30 30 H 1.08995 * 109.47463 * 79.59826 * 4 3 2 31 31 H 1.09001 * 109.47353 * 184.98042 * 5 4 3 32 32 H 1.08993 * 109.46667 * 304.98113 * 5 4 3 33 33 H 1.09000 * 109.47168 * 300.00018 * 7 6 5 34 34 H 1.08999 * 109.47305 * 59.99901 * 7 6 5 35 35 H 0.96993 * 120.00171 * 179.97438 * 11 10 8 36 36 H 1.07998 * 120.02331 * 359.97438 * 17 16 3 37 37 H 1.08003 * 119.94839 * 179.74850 * 18 17 16 38 38 H 1.07998 * 119.91886 * 180.25566 * 19 18 17 39 39 H 1.09003 * 109.46571 * 89.99987 * 21 20 19 40 40 H 1.08994 * 109.47008 * 209.99686 * 21 20 19 41 41 H 1.08997 * 109.46951 * 330.00109 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7988 2.0214 1.3054 5 6 1.8514 3.5423 1.1468 6 8 0.7634 3.9735 0.3267 7 6 0.7816 5.3700 0.0242 8 6 -0.4037 5.7120 -0.8413 9 1 -1.1010 4.9400 -1.1316 10 6 -0.5981 7.0104 -1.2624 11 7 0.2513 7.9504 -0.9092 12 14 -2.0678 7.4344 -2.3346 13 1 -3.3210 7.1005 -1.6112 14 1 -2.0488 8.8856 -2.6491 15 1 -2.0016 6.6541 -3.5963 16 6 3.3693 1.4394 -0.3620 17 6 4.3296 0.8369 0.4394 18 6 5.6627 0.8973 0.0822 19 6 6.0412 1.5473 -1.0782 20 6 5.0879 2.1437 -1.8830 21 6 5.5050 2.8505 -3.1470 22 6 3.7523 2.0922 -1.5288 23 9 2.8207 2.6744 -2.3153 24 1 -0.3633 -1.0274 0.0255 25 1 -0.3634 0.5358 0.8769 26 1 -0.3634 0.4916 -0.9025 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.8218 1.7299 1.6911 30 1 2.5743 1.7016 2.0014 31 1 1.7761 4.0127 2.1272 32 1 2.7939 3.8263 0.6789 33 1 0.7333 5.9430 0.9502 34 1 1.7015 5.6147 -0.5069 35 1 0.1147 8.8637 -1.2058 36 1 4.0351 0.3256 1.3439 37 1 6.4101 0.4320 0.7078 38 1 7.0839 1.5891 -1.3566 39 1 5.5003 2.1438 -3.9769 40 1 4.8079 3.6617 -3.3566 41 1 6.5086 3.2570 -3.0216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879414929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = -64.295141 kcal Electronic energy + Delta-G solvation = -22639.438933 eV Core-core repulsion = 19240.949283 eV Total energy + Delta-G solvation = -3398.489650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.34958 -39.82481 -37.44318 -36.06538 -32.64874 -32.51614 -31.15519 -30.08977 -27.73782 -26.89277 -26.50178 -22.68675 -22.54672 -22.10980 -21.93079 -19.90234 -17.43467 -16.57727 -16.40665 -16.06842 -15.87019 -15.28152 -14.96776 -14.71377 -14.35391 -14.18984 -13.73017 -13.58193 -13.26902 -13.15681 -12.90685 -12.62544 -12.31502 -12.23131 -11.76694 -11.69700 -11.67930 -11.53874 -11.27860 -11.08003 -10.80037 -10.74776 -10.55238 -10.35951 -9.93312 -8.99224 -8.72948 -8.68776 -8.45510 -8.27034 -8.01916 -6.00342 -4.00637 1.12752 1.24136 3.39192 3.41009 3.45734 3.53487 3.77540 4.43942 4.48514 4.71303 4.82702 4.89114 5.06558 5.15707 5.19825 5.23302 5.36024 5.36787 5.55766 5.57697 5.60060 5.62998 5.69700 5.85030 5.96948 6.06484 6.09189 6.14020 6.17286 6.18967 6.28866 6.35766 6.36699 6.49099 6.80879 7.10582 7.23424 7.51064 7.56821 7.91074 8.28553 8.73809 9.13553 9.63464 11.11511 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.005167 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.519996 B = 5417.964485 C = 6207.558820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 N -0.489 5.489 4 C 0.062 3.938 5 C 0.070 3.930 6 O -0.377 6.377 7 C 0.197 3.803 8 C -0.506 4.506 9 H 0.065 0.935 10 C 0.055 3.945 11 N -0.902 5.902 12 Si 0.906 3.094 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.064 3.936 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.100 4.100 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.132 3.868 23 F -0.113 7.113 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.000 1.000 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -16.597 2.103 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 N -0.210 5.210 4 C -0.064 4.064 5 C -0.008 4.008 6 O -0.297 6.297 7 C 0.123 3.877 8 C -0.545 4.545 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.734 3.266 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.031 4.031 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.171 4.171 22 C 0.111 3.889 23 F -0.091 7.091 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.064 -16.237 1.635 19.716 hybrid contribution -0.144 0.283 0.116 0.338 sum 10.920 -15.954 1.751 19.413 Atomic orbital electron populations 1.21781 0.94101 1.00828 1.03745 1.22087 0.96741 0.87248 1.00342 1.59443 1.12994 1.17491 1.31075 1.22335 1.01532 0.94797 0.87704 1.22151 0.91806 0.92497 0.94379 1.87924 1.44513 1.28038 1.69181 1.20130 0.97100 0.75903 0.94605 1.21011 1.09173 0.93873 1.30418 0.91645 1.24930 0.97080 0.95916 0.96614 1.69962 1.36570 1.01570 1.46020 0.86426 0.82449 0.77004 0.80764 1.20085 1.21255 1.20028 1.18871 0.89957 0.99541 0.94740 1.21509 0.93391 1.00344 0.99978 1.20969 0.95617 1.00539 0.97270 1.20876 0.98909 0.97664 0.94349 1.19964 0.91504 1.01579 0.99203 1.20730 1.02299 1.00273 0.93783 1.17544 0.85670 0.95745 0.89933 1.91591 1.64338 1.81061 1.72101 0.92658 0.92184 0.91212 0.91124 0.94869 0.89389 0.93644 0.94345 0.94980 0.98228 0.98026 0.92777 0.85704 0.85729 0.85342 0.90945 0.90657 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.00 37.15 0.37 -1.53 16 2 C 0.06 0.81 5.25 -3.83 -0.02 0.79 16 3 N -0.49 -7.96 4.16 -171.03 -0.71 -8.67 16 4 C 0.06 0.99 5.12 -3.82 -0.02 0.97 16 5 C 0.07 1.41 6.12 37.16 0.23 1.64 16 6 O -0.38 -9.66 10.27 -35.23 -0.36 -10.02 16 7 C 0.20 5.72 5.69 36.01 0.20 5.92 16 8 C -0.51 -15.58 9.43 -34.44 -0.32 -15.91 16 9 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -27.93 13.29 55.43 0.74 -27.20 16 12 Si 0.91 22.66 29.54 -169.99 -5.02 17.64 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 16 C 0.06 0.99 3.90 -83.67 -0.33 0.66 16 17 C -0.13 -1.60 8.52 -39.39 -0.34 -1.94 16 18 C -0.13 -1.32 10.04 -39.60 -0.40 -1.71 16 19 C -0.10 -1.10 9.70 -39.55 -0.38 -1.48 16 20 C -0.12 -1.65 5.88 -104.59 -0.62 -2.26 16 21 C -0.11 -1.34 9.83 36.01 0.35 -0.98 16 22 C 0.13 2.21 7.25 -39.26 -0.28 1.93 16 23 F -0.11 -2.31 16.28 2.25 0.04 -2.27 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.81 6.51 -51.93 -0.34 0.47 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 28 H 0.03 0.37 7.83 -51.93 -0.41 -0.04 16 29 H 0.09 1.35 6.24 -51.93 -0.32 1.02 16 30 H 0.05 0.60 6.73 -51.93 -0.35 0.25 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.67 7.59 -51.93 -0.39 0.28 16 33 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.13 1.28 7.29 -52.49 -0.38 0.90 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 41 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -33.95 344.03 -8.14 -42.09 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -6.35 Total: -4.39 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.65 Total: -12.36 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.02 Total: -35.87 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.36 Total: -10.02 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.95 -8.14 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879414929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds